jgi.p|Nanoce1779_2|602361, mRNA_8060 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602361
Unique Name	mRNA_8060
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1769
Alignment location	scaffold_25:58793..60908 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602447
Track	FilteredModels2
ProteinId	602361

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:58793..60908 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602361	gene_8060	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602361	mRNA_8060-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8060	CDS_8060	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:58793..60908-
coding sequence from alignment at scaffold_25:58793..60908-

mRNA sequence

>mRNA_8060 ID=mRNA_8060|Name=jgi.p|Nanoce1779_2|602361|organism=Nannochloropsis oceanica|type=mRNA|length=1769bp
GCTTCTTCAACTGAGGTAATTTTCCTAGGAGCAGCACCAGCACCAGCACC
AGCAGATATGGATTCTGCAGCAGCAGTAACAGCAGCAGCAGGAGGAGGAG
GAGGAGGAGGCAAAACGACCATACCGAAGAGAGAAAAGAGACAACTAGAG
AAAAAGCGAAAAAGGGAGGAGCAGGAGGCGAAACGCAACAAGGAGGTGGA
GGAGGGGCAGTGGGTGGAAAGTACGTCAGCTGACGGGCGTATCACAACGG
CCTACCTGAAACAAGCCGGAAGCAAGGGCACCATCGGTTTAAGGGGACAG
GCCCTTGTCGACCACCACATTTCTGAGGTCCTCACCGTCTTCTTGAACAC
CTCCTTGAGCACGGAATGGGTCTCCTACCTTGATCATGCGGAAGAGCTGC
CAACGTCGCAGGAGAACACTCACATCATCTATCAGTTTTTTGACATGCCC
TTGCCCTTGAGCGATCGGGAATTCTTGTTTGAGCGGAGGGTGGAGAGCGA
CCGGAAACGGAAGACGGTGGTGGCCAAGTACAGGAGTGTGGAGCACGCCA
GCAAGCCCCAGAGGAAAAACGTAGTGCGAGGAGAAACCCACAACACCTTC
TGGAAGTTCCGCGTTCTCAACAAGCGACAAACGCAAATAGAGGTCCAATC
AACGCTCAATCCCAAGCTACCCATCAACGGGTGGGTGGTACAGATGATGC
AGAACACCTACCAGCGAGCCTCGCTCCTGTCAATGCTGGATTTGGTGAAA
AAAGCGGATCCGCACCCCGTGTTTATGCAGTGGTAGTGTCAGAAAAAATT
GGAATATAGGGAGGAAGCGGGGGAAAGAAGATGCGAGGCAGGCGAAGGAG
GCGCACAGGGTGCATTTGGTGATTCGTATAAATCAAAGGGGAAATGAGAA
GATAGGTCAATCTGCTGCGCCTTCCTCGTGGCGAGGAGATTAGGGTCGGG
GTTTCCCGTAATTAATTGAACTGCCTCATGGCCACAACCTTGACCTCGTT
TGCGATCGGAGGAAAGGAGGGGCAAGGATTCATGCCCGGCTTAGTTTCCT
TCTCTCTGTATCTGAAAGGAGAGAGGGGAGGGGGGATGGGATGTTGATTG
GTCTTTATTGGTTTGCCGCTACTACTGAGAGACAGGTGAGGTGATGAAGG
GTGGGTGTGAGTAAAGTAACATGAGCCTCTCACTCCTACCTCCTTTCGCG
CGGCCGTACATGCGATGTAGATTAGGAAAAGACAGGAAGGTAAGCATTTA
CATCATATGAAAGGAAAAGGAAATACGTAGATAAAAAGTGAATATTTACA
TGTACATACACGTCGCCTACGCATTCAAACCTGGTCTGACTAGACCAGCG
AGAGGACGACTGTGGTTGTGGCTCTGTGCACGCGATTTAAGTTTGATTTT
GGCTTCGATTATTTCTCGCATTTCTTTTTTTTTTTACTTCCCCCACTCCC
TTCCCCTCCTCTGTCTTCCCCTCTCTGGTTTGGTTCAGGTCTTCCTGTCG
CTAGTCCCGCCCATTTTCACTGGCCAGCATTCGGAGCAGGTAGATGAAGA
TGCGGGTTATGTCCTATGGTGGTGGGGGGAGAAAGGAGGGAAGGAAGGAG
GAAATACAAGGATGAGAGCAAGTATTTCGTGGCCTTGAGCCCCATCTCGA
CGAGAAAGGTCTTCAATCCCTCCCTCCCCCCCCTCTGTCCCTACTCGGCA
AGCCAATTCACGATCCATCATTCCTAGGACACAAGTTCGATGGTCCCAAA
GCGTTGCCCTTTAACTCCC

protein sequence of jgi.p|Nanoce1779_2|602361

>mRNA_8060-protein ID=mRNA_8060-protein|Name=jgi.p|Nanoce1779_2|602361|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MDSAAAVTAAAGGGGGGGKTTIPKREKRQLEKKRKREEQEAKRNKEVEEG
QWVESTSADGRITTAYLKQAGSKGTIGLRGQALVDHHISEVLTVFLNTSL
STEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRK
RKTVVAKYRSVEHASKPQRKNVVRGETHNTFWKFRVLNKRQTQIEVQSTL
NPKLPINGWVVQMMQNTYQRASLLSMLDLVKKADPHPVFMQW*

mRNA from alignment at scaffold_25:58793..60908-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8060 ID=mRNA_8060|Name=jgi.p|Nanoce1779_2|602361|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp|location=Sequence derived from alignment at scaffold_25:58793..60908- (Nannochloropsis oceanica)
GCTTCTTCAACTGAGGTAATTTTCCTAGGAGCAGCACCAGCACCAGCACC
AGCAGATATGGATTCTGCAGCAGCAGTAACAGCAGCAGCAGGAGGAGGAG
GAGGAGGAGGCAAAACGACCATACCGAAGAGAGAAAAGAGACAACTAGAG
AAAAAGCGAAAAAGGGAGGAGCAGGAGGCGAAACGCAACAAGGAGGTGGA
GGAGGGGCAGTGGGTGGAAAGTACGTCAGCTGACGGGCGTATCACAACGG
CCTACCTGAAACAAGCCGGAAGCAAGGGCACCATCGGTTTAAGGGGACAG
GTAATTGTGGGAGGGAGGGAGTATGTGTGTGTGAGAGAGAGAGAAAAAAA
AGGCGGAATAAACTCAGCTCTGTGCGGGACTCTCACCATCCCTCCCTCAT
TCCTCTTTTCCTTCCCCTTTTCCTCCTTCTTTTCCTTCCTCCCCTTCTTC
CCTTCTATCTGCAGGCCCTTGTCGACCACCACATTTCTGAGGTCCTCACC
GTCTTCTTGAACACCTCCTTGAGCACGGAATGGGTCTCCTACCTTGATCA
TGCGGAAGAGCTGCCAACGTCGCAGGAGAACACTCACATCATCTATCAGT
TTTTTGACATGCCCTTGCCCTTGAGCGATCGGGAATTCTTGTTTGAGCGG
AGGGTGGAGAGCGACCGGAAACGGAAGACGGTGGTGGCCAAGTACAGGAG
TGTGGAGCACGCCAGCAAGCCCCAGAGGAAAAACGTAGTGCGAGGAGTAA
GTGGAAGAAGCTTCGGAAGAAGGAAAAGACAGAGGGAGGGAAAGAGAAGG
AGAGGGAGGGAGGGAGAGGAGGGCGTTAGTACTTTTGGATGCATTGACAT
ATTGCACCCCATACATCTCCCACCGACTCACCCTCCCTCTCCCCCTCCCT
TCCTCGCTGCCTGCCTCATTTTCAACCAGGAAACCCACAACACCTTCTGG
AAGTTCCGCGTTCTCAACAAGCGACAAACGCAAATAGAGGTCCAATCAAC
GCTCAATCCCAAGCTACCCATCAACGGGTGGGTGGTACAGATGATGCAGA
ACACCTACCAGCGAGCCTCGCTCCTGTCAATGCTGGATTTGGTGAAAAAA
GCGGATCCGCACCCCGTGTTTATGCAGTGGTAGTGTCAGAAAAAATTGGA
ATATAGGGAGGAAGCGGGGGAAAGAAGATGCGAGGCAGGCGAAGGAGGCG
CACAGGGTGCATTTGGTGATTCGTATAAATCAAAGGGGAAATGAGAAGAT
AGGTCAATCTGCTGCGCCTTCCTCGTGGCGAGGAGATTAGGGTCGGGGTT
TCCCGTAATTAATTGAACTGCCTCATGGCCACAACCTTGACCTCGTTTGC
GATCGGAGGAAAGGAGGGGCAAGGATTCATGCCCGGCTTAGTTTCCTTCT
CTCTGTATCTGAAAGGAGAGAGGGGAGGGGGGATGGGATGTTGATTGGTC
TTTATTGGTTTGCCGCTACTACTGAGAGACAGGTGAGGTGATGAAGGGTG
GGTGTGAGTAAAGTAACATGAGCCTCTCACTCCTACCTCCTTTCGCGCGG
CCGTACATGCGATGTAGATTAGGAAAAGACAGGAAGGTAAGCATTTACAT
CATATGAAAGGAAAAGGAAATACGTAGATAAAAAGTGAATATTTACATGT
ACATACACGTCGCCTACGCATTCAAACCTGGTCTGACTAGACCAGCGAGA
GGACGACTGTGGTTGTGGCTCTGTGCACGCGATTTAAGTTTGATTTTGGC
TTCGATTATTTCTCGCATTTCTTTTTTTTTTTACTTCCCCCACTCCCTTC
CCCTCCTCTGTCTTCCCCTCTCTGGTTTGGTTCAGGTCTTCCTGTCGCTA
GTCCCGCCCATTTTCACTGGCCAGCATTCGGAGCAGGTAGATGAAGATGC
GGGTTATGTCCTATGGTGGTGGGGGGAGAAAGGAGGGAAGGAAGGAGGAA
ATACAAGGATGAGAGCAAGTATTTCGTGGCCTTGAGCCCCATCTCGACGA
GAAAGGTCTTCAATCCCTCCCTCCCCCCCCTCTGTCCCTACTCGGCAAGC
CAATTCACGATCCATCATTCCTAGGACACAAGTTCGATGGTCCCAAAGCG
TTGCCCTTTAACTCCC

Coding sequence (CDS) from alignment at scaffold_25:58793..60908-

>mRNA_8060 ID=mRNA_8060|Name=jgi.p|Nanoce1779_2|602361|organism=Nannochloropsis oceanica|type=CDS|length=2187bp|location=Sequence derived from alignment at scaffold_25:58793..60908- (Nannochloropsis oceanica)
GAAACCCACAACACCTTCTGGAAGTTCCGCGTTCTCAACAAGCGACAAAC
GCAAATAGAGGTCCAATCAACGCTCAATCCCAAGCTACCCATCAACGGGT
GGGTGGTACAGATGATGCAGAACACCTACCAGCGAGCCTCGCTCCTGTCA
ATGCTGGATTTGGTGAAAAAAGCGGATCCGCACCCCGTGTTTATGCAGTG
GTAGGCCCTTGTCGACCACCACATTTCTGAGGTCCTCACCGTCTTCTTGA
ACACCTCCTTGAGCACGGAATGGGTCTCCTACCTTGATCATGCGGAAGAG
CTGCCAACGTCGCAGGAGAACACTCACATCATCTATCAGTTTTTTGACAT
GCCCTTGCCCTTGAGCGATCGGGAATTCTTGTTTGAGCGGAGGGTGGAGA
GCGACCGGAAACGGAAGACGGTGGTGGCCAAGTACAGGAGTGTGGAGCAC
GCCAGCAAGCCCCAGAGGAAAAACGTAGTGCGAGGAATGGATTCTGCAGC
AGCAGTAACAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGCAAAACGACCA
TACCGAAGAGAGAAAAGAGACAACTAGAGAAAAAGCGAAAAAGGGAGGAG
CAGGAGGCGAAACGCAACAAGGAGGTGGAGGAGGGGCAGTGGGTGGAAAG
TACGTCAGCTGACGGGCGTATCACAACGGCCTACCTGAAACAAGCCGGAA
GCAAGGGCACCATCGGTTTAAGGGGACAGGAAACCCACAACACCTTCTGG
AAGTTCCGCGTTCTCAACAAGCGACAAACGCAAATAGAGGTCCAATCAAC
GCTCAATCCCAAGCTACCCATCAACGGGTGGGTGGTACAGATGATGCAGA
ACACCTACCAGCGAGCCTCGCTCCTGTCAATGCTGGATTTGGTGAAAAAA
GCGGATCCGCACCCCGTGTTTATGCAGTGGTAGGCCCTTGTCGACCACCA
CATTTCTGAGGTCCTCACCGTCTTCTTGAACACCTCCTTGAGCACGGAAT
GGGTCTCCTACCTTGATCATGCGGAAGAGCTGCCAACGTCGCAGGAGAAC
ACTCACATCATCTATCAGTTTTTTGACATGCCCTTGCCCTTGAGCGATCG
GGAATTCTTGTTTGAGCGGAGGGTGGAGAGCGACCGGAAACGGAAGACGG
TGGTGGCCAAGTACAGGAGTGTGGAGCACGCCAGCAAGCCCCAGAGGAAA
AACGTAGTGCGAGGAATGGATTCTGCAGCAGCAGTAACAGCAGCAGCAGG
AGGAGGAGGAGGAGGAGGCAAAACGACCATACCGAAGAGAGAAAAGAGAC
AACTAGAGAAAAAGCGAAAAAGGGAGGAGCAGGAGGCGAAACGCAACAAG
GAGGTGGAGGAGGGGCAGTGGGTGGAAAGTACGTCAGCTGACGGGCGTAT
CACAACGGCCTACCTGAAACAAGCCGGAAGCAAGGGCACCATCGGTTTAA
GGGGACAGGAAACCCACAACACCTTCTGGAAGTTCCGCGTTCTCAACAAG
CGACAAACGCAAATAGAGGTCCAATCAACGCTCAATCCCAAGCTACCCAT
CAACGGGTGGGTGGTACAGATGATGCAGAACACCTACCAGCGAGCCTCGC
TCCTGTCAATGCTGGATTTGGTGAAAAAAGCGGATCCGCACCCCGTGTTT
ATGCAGTGGTAGGCCCTTGTCGACCACCACATTTCTGAGGTCCTCACCGT
CTTCTTGAACACCTCCTTGAGCACGGAATGGGTCTCCTACCTTGATCATG
CGGAAGAGCTGCCAACGTCGCAGGAGAACACTCACATCATCTATCAGTTT
TTTGACATGCCCTTGCCCTTGAGCGATCGGGAATTCTTGTTTGAGCGGAG
GGTGGAGAGCGACCGGAAACGGAAGACGGTGGTGGCCAAGTACAGGAGTG
TGGAGCACGCCAGCAAGCCCCAGAGGAAAAACGTAGTGCGAGGAATGGAT
TCTGCAGCAGCAGTAACAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGCAA
AACGACCATACCGAAGAGAGAAAAGAGACAACTAGAGAAAAAGCGAAAAA
GGGAGGAGCAGGAGGCGAAACGCAACAAGGAGGTGGAGGAGGGGCAGTGG
GTGGAAAGTACGTCAGCTGACGGGCGTATCACAACGGCCTACCTGAAACA
AGCCGGAAGCAAGGGCACCATCGGTTTAAGGGGACAG

Synonyms

Publications