jgi.p|Nanoce1779_2|656074, mRNA_8058 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|656074
Unique Name	mRNA_8058
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1538
Alignment location	scaffold_25:55390..57126 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	656160
Track	FilteredModels2
ProteinId	656074

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:55390..57126 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|656074	gene_8058	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|656074	mRNA_8058-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8058	CDS_8058	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:55390..57126+
coding sequence from alignment at scaffold_25:55390..57126+

mRNA sequence

>mRNA_8058 ID=mRNA_8058|Name=jgi.p|Nanoce1779_2|656074|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp
ATGGAGGACAAGGGTGAAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGA
GAAGAGAAAGGGGCCTGCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCG
AGACGGATGAACAGGGGAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAAC
TGGATAGAGCCCGAAGGGAAATATCGGTCAGAGGCGGATAGGTACCATCT
CTACGTGTCCTTGGCCTGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTT
ATTTGAAAGGCCTCGACAATGCCATCTCCATCAGCGTTACGCACCCCACG
TGGACACGTACCCGGATCAACGACGAGCTGGACCACCATACGGGATGGGT
TTTCCGCTCCTCCTTCGACCCTCCCCTCTCGTCCCCCGCCGGATGGGGCG
CCTTCTCGTGCGACGGCTGCATCCCTGATTACATCAACGGGGCCAGGACA
ATTCGCGACTTATATGAACTATCCAAGGATACAGAGGGGAAATACACGGT
GCCCGTGCTCTGGGACAAGGCGACTTCCACCATTGTGAATAATGAGAGCG
GGGACATCATGAAGATGCTGAACGACAATTTCAATTTTCTGGCGATGAAT
CCCACGTTGAATCTGAAGCCCTTAGAGCTGGCGAAGGCCGTGGACCAGTA
CAATCTGTGGCTACATGAGAACATCAACGATGGCGTGTATAAGTGTGGGT
TTGCCACCAGCCAGGCCGCGTACGAGGAGGCAGTTGAGGGCGTGGTGGGG
GCCATGGATCATGCGGAGGCTTTACTTGGGCGACAGCGGTATCTGTTGGG
GGATCGGTTGACAGAAGCGGACGTTCGCTTGTTCCCGACGTTGGTGCGAT
TTGATGAGGAATGGTCATCATCGACCTTGAAATATCCCCGCGATTTAAGT
GATAATCATCACATACCTAAATCGATATATCCCATTTCTCTCAATTATCC
ACAGGTATACAACCCCCACTTCAAATGCAATCGCAAATCCATCCTAAAAG
ACTACCCCAACCTTCTCAACTACGCTCGGGAGATCTTCCAGCTGCCGGGC
GTTGCCCTCTCAGTCAATATGCAGCACATTAAGACGCATTATTATTCCTC
ACACCCGACATTGGAGCATTTTGCGATGGTCCCAGCCGGGCCTCGGTTTT
TGCACGAGCTGTACAAGGCGCATGACCGGGAGAGATTCCCTCGGAGAAGG
GTCGGGTTGTGGTAGGGTGGGTGCGAGGGAGGGAGGATGAGAGGGAGGGG
GTTGTGGGGCTAGATCCCACATTGTGGGAGGAAAGGAGCGGGAGGGGGAA
AAGGGACGAGTAGAGCACTACGGTTATTGATATTTTCATTCAAACATTTT
TGACTTTCCCCTCAGTCTCCGTAGTTTTTGAAAGGATTTGGCTTCGATTG
CGCACAAAAGCTGCCATCGTCGCTTGGGTTGCGAAGCCAAACAAAAAAAT
ATCTTTGTAGATAGGTAGCCATTCAATTTGAAAGAAGAAAAGAAGGTGGT
ATAAATTGGCATATATATACATATATAGGTGCCCTTGG

protein sequence of jgi.p|Nanoce1779_2|656074

>mRNA_8058-protein ID=mRNA_8058-protein|Name=jgi.p|Nanoce1779_2|656074|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MEDKGEGRGGNGRRDEEKRKGPAKFSGVRTSLSETDEQGRFVRSPSVHRN
WIEPEGKYRSEADRYHLYVSLACPWSARCLMVLYLKGLDNAISISVTHPT
WTRTRINDELDHHTGWVFRSSFDPPLSSPAGWGAFSCDGCIPDYINGART
IRDLYELSKDTEGKYTVPVLWDKATSTIVNNESGDIMKMLNDNFNFLAMN
PTLNLKPLELAKAVDQYNLWLHENINDGVYKCGFATSQAAYEEAVEGVVG
AMDHAEALLGRQRYLLGDRLTEADVRLFPTLVRFDEEWSSSTLKYPRDLS
DNHHIPKSIYPISLNYPQVYNPHFKCNRKSILKDYPNLLNYAREIFQLPG
VALSVNMQHIKTHYYSSHPTLEHFAMVPAGPRFLHELYKAHDRERFPRRR
VGLW*

mRNA from alignment at scaffold_25:55390..57126+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8058 ID=mRNA_8058|Name=jgi.p|Nanoce1779_2|656074|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_25:55390..57126+ (Nannochloropsis oceanica)
ATGGAGGACAAGGGTGAAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGA
GAAGAGAAAGGGGCCTGCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCG
AGACGGATGAACAGGGGAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAAC
TGGATAGAGCCCGAAGGGAAATATCGGTCAGAGGCGGATAGGTACCATCT
CTACGTGTCCTTGGCCTGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTT
ATTTGAAAGGTACATGAGGTGTTGCGCCTCCCCCCCCCTCCTTTCCTCCC
TCCCTTCCTTTCTCCTACCCTCCTACCCTCTCCTCCCTCTCATGCTTGCA
CATGCCCCCTCTCCCCCTTAGGCCTCGACAATGCCATCTCCATCAGCGTT
ACGCACCCCACGTGGACACGTACCCGGATCAACGACGAGCTGGACCACCA
TACGGGATGGGTTTTCCGCTCCTCCTTCGACCCTCCCCTCTCGTCCCCCG
CCGGATGGGGCGCCTTCTCGTGCGACGGCTGCATCCCTGATTACATCAAC
GGGGCCAGGACAATTCGCGACTTATATGAACTATCCAAGGATACAGAGGG
GAAATACACGGTGCCCGTGCTCTGGGACAAGGCGACTTCCACCATTGTGA
ATAATGAGAGCGGGGACATCATGAAGATGCTGAACGACAATTTCAATTTT
CTGGCGATGAATCCCACGTTGAATCTGAAGCCCTTAGAGCTGGCGAAGGC
CGTGGACCAGTACAATCTGTGGCTACATGAGAACATCAACGATGGCGTGT
ATAAGTGTGGGTTTGCCACCAGCCAGGCCGCGTACGAGGAGGCAGTTGAG
GGCGTGGTGGGGGCCATGGATCATGCGGAGGCTTTACTTGGGCGACAGCG
GTATCTGTTGGGGGATCGGTTGACAGAAGCGGACGTTCGCTTGTTCCCGA
CGTTGGTGCGATTTGATGAGGTAAGCGAGGGAGGAAAGAAGGAAGGGAGG
GGGAAGGTTCCAGGTTGTGTTGTCTTATCCTTTTTTGTTTTTTGTCTTTT
AACTTAGGAATGGTCATCATCGACCTTGAAATATCCCCGCGATTTAAGTG
ATAATCATCACATACCTAAATCGATATATCCCATTTCTCTCAATTATCCA
CAGGTATACAACCCCCACTTCAAATGCAATCGCAAATCCATCCTAAAAGA
CTACCCCAACCTTCTCAACTACGCTCGGGAGATCTTCCAGCTGCCGGGCG
TTGCCCTCTCAGTCAATATGCAGCACATTAAGACGCATTATTATTCCTCA
CACCCGACATTGGAGCATTTTGCGATGGTCCCAGCCGGGCCTCGGTTTTT
GCACGAGCTGTACAAGGCGCATGACCGGGAGAGATTCCCTCGGAGAAGGG
TCGGGTTGTGGTAGGGTGGGTGCGAGGGAGGGAGGATGAGAGGGAGGGGG
TTGTGGGGCTAGATCCCACATTGTGGGAGGAAAGGAGCGGGAGGGGGAAA
AGGGACGAGTAGAGCACTACGGTTATTGATATTTTCATTCAAACATTTTT
GACTTTCCCCTCAGTCTCCGTAGTTTTTGAAAGGATTTGGCTTCGATTGC
GCACAAAAGCTGCCATCGTCGCTTGGGTTGCGAAGCCAAACAAAAAAATA
TCTTTGTAGATAGGTAGCCATTCAATTTGAAAGAAGAAAAGAAGGTGGTA
TAAATTGGCATATATATACATATATAGGTGCCCTTGG

Coding sequence (CDS) from alignment at scaffold_25:55390..57126+

>mRNA_8058 ID=mRNA_8058|Name=jgi.p|Nanoce1779_2|656074|organism=Nannochloropsis oceanica|type=CDS|length=3645bp|location=Sequence derived from alignment at scaffold_25:55390..57126+ (Nannochloropsis oceanica)
ATGGAGGACAAGGGTGAAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGA
GAAGAGAAAGGGGCCTGCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCG
AGACGGATGAACAGGGGAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAAC
TGGATAGAGCCCGAAGGGAAATATCGGTCAGAGGCGGATAGGTACCATCT
CTACGTGTCCTTGGCCTGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTT
ATTTGAAAGGCCTCGACAATGCCATCTCCATCAGCGTTACGCACCCCACG
TGGACACGTACCCGGATCAACGACGAGCTGGACCACCATACGGGATGGGT
TTTCCGCTCCTCCTTCGACCCTCCCCTCTCGTCCCCCGCCGGATGGGGCG
CCTTCTCGTGCGACGGCTGCATCCCTGATTACATCAACGGGGCCAGGACA
ATTCGCGACTTATATGAACTATCCAAGGATACAGAGGGGAAATACACGGT
GCCCGTGCTCTGGGACAAGGCGACTTCCACCATTGTGAATAATGAGAGCG
GGGACATCATGAAGATGCTGAACGACAATTTCAATTTTCTGGCGATGAAT
CCCACGTTGAATCTGAAGCCCTTAGAGCTGGCGAAGGCCGTGGACCAGTA
CAATCTGTGGCTACATGAGAACATCAACGATGGCGTGTATAAGTGTGGGT
TTGCCACCAGCCAGGCCGCGTACGAGGAGGCAGTTGAGGGCGTGGTGGGG
GCCATGGATCATGCGGAGGCTTTACTTGGGCGACAGCGGTATCTGTTGGG
GGATCGGTTGACAGAAGCGGACGTTCGCTTGTTCCCGACGTTGGTGCGAT
TTGATGAGGAATGGTCATCATCGACCTTGAAATATCCCCGCGATTTAAGT
GATAATCATCACATACCTAAATCGATATATCCCATTTCTCTCAATTATCC
ACAGGTATACAACCCCCACTTCAAATGCAATCGCAAATCCATCCTAAAAG
ACTACCCCAACCTTCTCAACTACGCTCGGGAGATCTTCCAGCTGCCGGGC
GTTGCCCTCTCAGTCAATATGCAGCACATTAAGACGCATTATTATTCCTC
ACACCCGACATTGGAGCATTTTGCGATGGTCCCAGCCGGGCCTCGGTTTT
TGCACGAGCTGTACAAGGCGCATGACCGGGAGAGATTCCCTCGGAGAAGG
GTCGGGTTGTGGTAGATGGAGGACAAGGGTGAAGGAAGAGGGGGGAATGG
TAGGAGGGATGAAGAGAAGAGAAAGGGGCCTGCGAAATTTAGTGGGGTTA
GGACGTCGCTCAGCGAGACGGATGAACAGGGGAGGTTTGTCCGCAGTCCG
AGCGTGCATAGGAACTGGATAGAGCCCGAAGGGAAATATCGGTCAGAGGC
GGATAGGTACCATCTCTACGTGTCCTTGGCCTGCCCCTGGTCGGCTCGGT
GTTTGATGGTGCTTTATTTGAAAGGCCTCGACAATGCCATCTCCATCAGC
GTTACGCACCCCACGTGGACACGTACCCGGATCAACGACGAGCTGGACCA
CCATACGGGATGGGTTTTCCGCTCCTCCTTCGACCCTCCCCTCTCGTCCC
CCGCCGGATGGGGCGCCTTCTCGTGCGACGGCTGCATCCCTGATTACATC
AACGGGGCCAGGACAATTCGCGACTTATATGAACTATCCAAGGATACAGA
GGGGAAATACACGGTGCCCGTGCTCTGGGACAAGGCGACTTCCACCATTG
TGAATAATGAGAGCGGGGACATCATGAAGATGCTGAACGACAATTTCAAT
TTTCTGGCGATGAATCCCACGTTGAATCTGAAGCCCTTAGAGCTGGCGAA
GGCCGTGGACCAGTACAATCTGTGGCTACATGAGAACATCAACGATGGCG
TGTATAAGTGTGGGTTTGCCACCAGCCAGGCCGCGTACGAGGAGGCAGTT
GAGGGCGTGGTGGGGGCCATGGATCATGCGGAGGCTTTACTTGGGCGACA
GCGGTATCTGTTGGGGGATCGGTTGACAGAAGCGGACGTTCGCTTGTTCC
CGACGTTGGTGCGATTTGATGAGGAATGGTCATCATCGACCTTGAAATAT
CCCCGCGATTTAAGTGATAATCATCACATACCTAAATCGATATATCCCAT
TTCTCTCAATTATCCACAGGTATACAACCCCCACTTCAAATGCAATCGCA
AATCCATCCTAAAAGACTACCCCAACCTTCTCAACTACGCTCGGGAGATC
TTCCAGCTGCCGGGCGTTGCCCTCTCAGTCAATATGCAGCACATTAAGAC
GCATTATTATTCCTCACACCCGACATTGGAGCATTTTGCGATGGTCCCAG
CCGGGCCTCGGTTTTTGCACGAGCTGTACAAGGCGCATGACCGGGAGAGA
TTCCCTCGGAGAAGGGTCGGGTTGTGGTAGATGGAGGACAAGGGTGAAGG
AAGAGGGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCTGCGA
AATTTAGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGGGAGG
TTTGTCCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAGGGAA
ATATCGGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCCTGCC
CCTGGTCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGCCTCGACAAT
GCCATCTCCATCAGCGTTACGCACCCCACGTGGACACGTACCCGGATCAA
CGACGAGCTGGACCACCATACGGGATGGGTTTTCCGCTCCTCCTTCGACC
CTCCCCTCTCGTCCCCCGCCGGATGGGGCGCCTTCTCGTGCGACGGCTGC
ATCCCTGATTACATCAACGGGGCCAGGACAATTCGCGACTTATATGAACT
ATCCAAGGATACAGAGGGGAAATACACGGTGCCCGTGCTCTGGGACAAGG
CGACTTCCACCATTGTGAATAATGAGAGCGGGGACATCATGAAGATGCTG
AACGACAATTTCAATTTTCTGGCGATGAATCCCACGTTGAATCTGAAGCC
CTTAGAGCTGGCGAAGGCCGTGGACCAGTACAATCTGTGGCTACATGAGA
ACATCAACGATGGCGTGTATAAGTGTGGGTTTGCCACCAGCCAGGCCGCG
TACGAGGAGGCAGTTGAGGGCGTGGTGGGGGCCATGGATCATGCGGAGGC
TTTACTTGGGCGACAGCGGTATCTGTTGGGGGATCGGTTGACAGAAGCGG
ACGTTCGCTTGTTCCCGACGTTGGTGCGATTTGATGAGGAATGGTCATCA
TCGACCTTGAAATATCCCCGCGATTTAAGTGATAATCATCACATACCTAA
ATCGATATATCCCATTTCTCTCAATTATCCACAGGTATACAACCCCCACT
TCAAATGCAATCGCAAATCCATCCTAAAAGACTACCCCAACCTTCTCAAC
TACGCTCGGGAGATCTTCCAGCTGCCGGGCGTTGCCCTCTCAGTCAATAT
GCAGCACATTAAGACGCATTATTATTCCTCACACCCGACATTGGAGCATT
TTGCGATGGTCCCAGCCGGGCCTCGGTTTTTGCACGAGCTGTACAAGGCG
CATGACCGGGAGAGATTCCCTCGGAGAAGGGTCGGGTTGTGGTAG

Synonyms

Publications