jgi.p|Nanoce1779_2|200739, mRNA_8057 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|200739
Unique NamemRNA_8057
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1163
Alignment locationscaffold_25:54192..55354 +

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Properties
Property NameValue
TranscriptId200825
TrackFilteredModels2
ProteinId200739
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:54192..55354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200739gene_8057Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200739mRNA_8057-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8057CDS_8057Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8057 ID=mRNA_8057|Name=jgi.p|Nanoce1779_2|200739|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp
CCGTCTCTCTTGCTTGACGGAATCGCTCAAGTTCTATCTGCTTCAATTAC
CAAGCCACTACCCATTCATAAACACCCATCCAACCTCACTGACACCTCTC
CCGCTTATATGTGTACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGA
ATTTTCATTTTTTGCTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAAC
CCTCGCCTCGAACCCGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCA
CACAAACGTCAACACTACCTATCCCACGCTTTCCATCACGCTGCCGTCAA
AATAGGGTCGCTGACCATTCCATGTCCTCTCCTATGGTAATGCGACTGTC
GCGCCCGGCTCTCCGTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTAC
TCGATCCCCTCAACGCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCAC
CGGACCATTAAAGGGAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTC
TTTTGCGTCTCCAGCTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTC
GTCACGTCCTTATCATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATAT
CACGGCGACAACGACGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCA
GGGCAGCAACAGTGGTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTG
GCATTTCATCCTCCCCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCT
CCTCCCCCCTCGTCTTTTTTTAACCCTGACTTTGAGGATGATGACCAGCA
CGTTGGTACCCACAACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTA
GCACTAGTAGCACCAGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTT
CCTTGGATCGAGGTAAGTGAAGGGTGGAGGGACGGAGGAAGGGACGGATG
CATGGCATGTGCTGCGTTTGCGGGTTGTGAGTTATCTTGGTGTAGAGACA
CGGTACTACTCCCTTCCCTCCTTTTGGTATCATGAATTATGATGCCTTCA
TCCTCTCTCCCTCCTTCACCCTCCTTCCCTTTACCCTACCTACCCACTCA
TTCCCAAAAAATAGGGCCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCT
GCCAACACTCGCC
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protein sequence of jgi.p|Nanoce1779_2|200739

>mRNA_8057-protein ID=mRNA_8057-protein|Name=jgi.p|Nanoce1779_2|200739|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MCTGCRCCSRVSGGIFIFCCHAVVQWRSLLTLASNPSLEVSSAAPQPTQT
STLPIPRFPSRCRQNRVADHSMSSPMVMRLSRPALRPSHLCLALCILLDP
LNAFNPQLPSSSFHRTIKGNTAFPSSNSPHSFASPAAAAVTCMRPCRRHV
LIMDAASAGGWPPYHGDNDDSSSSSGGSGGQGSNSGGSEFGGIGSSSGIS
SSPSSAANVPASFPPPPSSFFNPDFEDDDQHVGTHNSEDSDSDSASSSTS
STRIDGSCTLGKRVPWIEVSEGWRDGGRDGCMACAAFAGCELSWCRDTVL
LPSLLLVS*
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mRNA from alignment at scaffold_25:54192..55354+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8057 ID=mRNA_8057|Name=jgi.p|Nanoce1779_2|200739|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp|location=Sequence derived from alignment at scaffold_25:54192..55354+ (Nannochloropsis oceanica)
CCGTCTCTCTTGCTTGACGGAATCGCTCAAGTTCTATCTGCTTCAATTAC
CAAGCCACTACCCATTCATAAACACCCATCCAACCTCACTGACACCTCTC
CCGCTTATATGTGTACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGA
ATTTTCATTTTTTGCTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAAC
CCTCGCCTCGAACCCGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCA
CACAAACGTCAACACTACCTATCCCACGCTTTCCATCACGCTGCCGTCAA
AATAGGGTCGCTGACCATTCCATGTCCTCTCCTATGGTAATGCGACTGTC
GCGCCCGGCTCTCCGTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTAC
TCGATCCCCTCAACGCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCAC
CGGACCATTAAAGGGAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTC
TTTTGCGTCTCCAGCTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTC
GTCACGTCCTTATCATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATAT
CACGGCGACAACGACGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCA
GGGCAGCAACAGTGGTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTG
GCATTTCATCCTCCCCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCT
CCTCCCCCCTCGTCTTTTTTTAACCCTGACTTTGAGGATGATGACCAGCA
CGTTGGTACCCACAACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTA
GCACTAGTAGCACCAGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTT
CCTTGGATCGAGGTAAGTGAAGGGTGGAGGGACGGAGGAAGGGACGGATG
CATGGCATGTGCTGCGTTTGCGGGTTGTGAGTTATCTTGGTGTAGAGACA
CGGTACTACTCCCTTCCCTCCTTTTGGTATCATGAATTATGATGCCTTCA
TCCTCTCTCCCTCCTTCACCCTCCTTCCCTTTACCCTACCTACCCACTCA
TTCCCAAAAAATAGGGCCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCT
GCCAACACTCGCC
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Coding sequence (CDS) from alignment at scaffold_25:54192..55354+

>mRNA_8057 ID=mRNA_8057|Name=jgi.p|Nanoce1779_2|200739|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_25:54192..55354+ (Nannochloropsis oceanica)
ATGTGTACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGAATTTTCAT
TTTTTGCTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAACCCTCGCCT
CGAACCCGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCACACAAACG
TCAACACTACCTATCCCACGCTTTCCATCACGCTGCCGTCAAAATAGGGT
CGCTGACCATTCCATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGG
CTCTCCGTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCC
CTCAACGCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCAT
TAAAGGGAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGT
CTCCAGCTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTC
CTTATCATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGA
CAACGACGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCA
ACAGTGGTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCA
TCCTCCCCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCC
CTCGTCTTTTTTTAACCCTGACTTTGAGGATGATGACCAGCACGTTGGTA
CCCACAACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGT
AGCACCAGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGAT
CGAGGTAAGTGAAGGGTGGAGGGACGGAGGAAGGGACGGATGCATGGCAT
GTGCTGCGTTTGCGGGTTGTGAGTTATCTTGGTGTAGAGACACGGTACTA
CTCCCTTCCCTCCTTTTGGTATCATGA
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Synonyms
Publications