jgi.p|Nanoce1779_2|200746, mRNA_8055 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|200746
Unique NamemRNA_8055
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1517
Alignment locationscaffold_25:50757..52273 -

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Properties
Property NameValue
TranscriptId200832
TrackFilteredModels2
ProteinId200746
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:50757..52273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200746gene_8055Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200746mRNA_8055-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8055CDS_8055Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8055 ID=mRNA_8055|Name=jgi.p|Nanoce1779_2|200746|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
AGGAAGAGAATAATAAACAACACAGCGGATCGGCACGCATGCTTTCTCCT
CCTCCTCTTCCTGATCCCCGACGACCATGGCAAGTGACAGTCGTGTATAA
TCGGTGTACAGGACAACTTACGATTTCCTTCATGATAGTAGTTGTCATTC
AGGGAGTTCTATACACCGTGAAACTTGTGAGAGCTGTTTCTGGGAGTCGA
GGATACGGTCTTCTGACGATGATGACGATCCCCAAGTGCAAGCACACCCA
AATGCCCCATGCTTCATGCTTATGCATATATGTCCCTGCATCTACACCCA
CCACATACGCACATGCAGGTCAGACCAGGCCTCTTGCTACTCCGGGGCCC
GGGCATCGCTTTTTTTCTTTGGCGACGACTAAACACAAGCAAGCACCCGG
CATCATTTCCCACTGCAAACGACGCCATCACGCCTTCAAAATTCAAACAA
ACATACGAAACCACCCTGCACAAGCACCAGCAAAGCATGGAGACATCAAT
CCTTCCGTCGCAGACATCGGTACCAGCGGTACCATCAGCAGGAGACGACG
TCACTGCCCCCTCCACGCTCATCAGCGTCACCTCTACAAACCATGCTCCG
CCCACCTCCACCCCTCCCCGTCGGCTTCCCCTCCTCCCCCCGACCAGCCC
CCTCAACCCATCCAGCAGCACTGCCGATGCCTTTGCCCAATCTACGTCAT
GCAAAACACCTCGCACATCTGACGATGACGATGGAGGAGGATTCAGCACC
CCCGTCGCTCCTACAACCGGCGCGCTGCACAGCACAGGCTCCGCTCTTCA
CCACAATCACCACCGCCGTCACTCCCACTGCTTGCAACACTCCCCTTCTC
CTTCTCCTTCCCAATCCATCAAACCTGATGCCTACGAAGGACGTGATCAT
GACCAAGATTGTCCCATATGCATGAGTCCCCTTGCCTCCAGGTCCATATA
CAAAACGCGTTGCTCCCACAGGTTCCACAAATCGTGTCTGGTCGAGTCAA
GGGCCGCACACATAAATGGATGTCCTTTCTGTAGGGGAGAAATCACCCCG
GGGCTGACGCCGTTCGAAGCATGCCTGGGAAGGGTGTTAAGTGAGAGGGA
ACAGATCATCTCGAGGGCAAGAACAGCGAGGCAGGCTGTGCTGGCACGGA
TGCAGCAACGAGGGGAAGGGAGGGAAGGTGGAGGGAGGAGCTTGGCCTTT
TCTGTGTTGAGGGAGGAGGAGGTCCCGTATAGGGGAAGGAGGGGATTAGA
GGAGCGGTTTGAGACAGAGGCGATGGTAGGGGAAGGGGAGGAAGGGAGGG
TGGGAGGGGAGGGAGGGAGGAGGGTGGTGATGGCCTTGACGACGGAGGAT
TTGGGCCATCGGATTGACCATGAAGGGGATTTGCCTTTCTAGAGAGAGAG
GATAGGAGGGAAAAGGAGTCGTGTATAAAGTGGATGGAGGGAGAAAAGAA
CAGAGTCAGGAAGGAGGGAGGAAAGAAGTGGGGGAAGGAGGGAGATGAGG
ATGATATGGCTGTACAG
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protein sequence of jgi.p|Nanoce1779_2|200746

>mRNA_8055-protein ID=mRNA_8055-protein|Name=jgi.p|Nanoce1779_2|200746|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MLHAYAYMSLHLHPPHTHMQVRPGLLLLRGPGIAFFLWRRLNTSKHPASF
PTANDAITPSKFKQTYETTLHKHQQSMETSILPSQTSVPAVPSAGDDVTA
PSTLISVTSTNHAPPTSTPPRRLPLLPPTSPLNPSSSTADAFAQSTSCKT
PRTSDDDDGGGFSTPVAPTTGALHSTGSALHHNHHRRHSHCLQHSPSPSP
SQSIKPDAYEGRDHDQDCPICMSPLASRSIYKTRCSHRFHKSCLVESRAA
HINGCPFCRGEITPGLTPFEACLGRVLSEREQIISRARTARQAVLARMQQ
RGEGREGGGRSLAFSVLREEEVPYRGRRGLEERFETEAMVGEGEEGRVGG
EGGRRVVMALTTEDLGHRIDHEGDLPF*
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mRNA from alignment at scaffold_25:50757..52273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8055 ID=mRNA_8055|Name=jgi.p|Nanoce1779_2|200746|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at scaffold_25:50757..52273- (Nannochloropsis oceanica)
AGGAAGAGAATAATAAACAACACAGCGGATCGGCACGCATGCTTTCTCCT
CCTCCTCTTCCTGATCCCCGACGACCATGGCAAGTGACAGTCGTGTATAA
TCGGTGTACAGGACAACTTACGATTTCCTTCATGATAGTAGTTGTCATTC
AGGGAGTTCTATACACCGTGAAACTTGTGAGAGCTGTTTCTGGGAGTCGA
GGATACGGTCTTCTGACGATGATGACGATCCCCAAGTGCAAGCACACCCA
AATGCCCCATGCTTCATGCTTATGCATATATGTCCCTGCATCTACACCCA
CCACATACGCACATGCAGGTCAGACCAGGCCTCTTGCTACTCCGGGGCCC
GGGCATCGCTTTTTTTCTTTGGCGACGACTAAACACAAGCAAGCACCCGG
CATCATTTCCCACTGCAAACGACGCCATCACGCCTTCAAAATTCAAACAA
ACATACGAAACCACCCTGCACAAGCACCAGCAAAGCATGGAGACATCAAT
CCTTCCGTCGCAGACATCGGTACCAGCGGTACCATCAGCAGGAGACGACG
TCACTGCCCCCTCCACGCTCATCAGCGTCACCTCTACAAACCATGCTCCG
CCCACCTCCACCCCTCCCCGTCGGCTTCCCCTCCTCCCCCCGACCAGCCC
CCTCAACCCATCCAGCAGCACTGCCGATGCCTTTGCCCAATCTACGTCAT
GCAAAACACCTCGCACATCTGACGATGACGATGGAGGAGGATTCAGCACC
CCCGTCGCTCCTACAACCGGCGCGCTGCACAGCACAGGCTCCGCTCTTCA
CCACAATCACCACCGCCGTCACTCCCACTGCTTGCAACACTCCCCTTCTC
CTTCTCCTTCCCAATCCATCAAACCTGATGCCTACGAAGGACGTGATCAT
GACCAAGATTGTCCCATATGCATGAGTCCCCTTGCCTCCAGGTCCATATA
CAAAACGCGTTGCTCCCACAGGTTCCACAAATCGTGTCTGGTCGAGTCAA
GGGCCGCACACATAAATGGATGTCCTTTCTGTAGGGGAGAAATCACCCCG
GGGCTGACGCCGTTCGAAGCATGCCTGGGAAGGGTGTTAAGTGAGAGGGA
ACAGATCATCTCGAGGGCAAGAACAGCGAGGCAGGCTGTGCTGGCACGGA
TGCAGCAACGAGGGGAAGGGAGGGAAGGTGGAGGGAGGAGCTTGGCCTTT
TCTGTGTTGAGGGAGGAGGAGGTCCCGTATAGGGGAAGGAGGGGATTAGA
GGAGCGGTTTGAGACAGAGGCGATGGTAGGGGAAGGGGAGGAAGGGAGGG
TGGGAGGGGAGGGAGGGAGGAGGGTGGTGATGGCCTTGACGACGGAGGAT
TTGGGCCATCGGATTGACCATGAAGGGGATTTGCCTTTCTAGAGAGAGAG
GATAGGAGGGAAAAGGAGTCGTGTATAAAGTGGATGGAGGGAGAAAAGAA
CAGAGTCAGGAAGGAGGGAGGAAAGAAGTGGGGGAAGGAGGGAGATGAGG
ATGATATGGCTGTACAG
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Coding sequence (CDS) from alignment at scaffold_25:50757..52273-

>mRNA_8055 ID=mRNA_8055|Name=jgi.p|Nanoce1779_2|200746|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_25:50757..52273- (Nannochloropsis oceanica)
ATGCTTCATGCTTATGCATATATGTCCCTGCATCTACACCCACCACATAC
GCACATGCAGGTCAGACCAGGCCTCTTGCTACTCCGGGGCCCGGGCATCG
CTTTTTTTCTTTGGCGACGACTAAACACAAGCAAGCACCCGGCATCATTT
CCCACTGCAAACGACGCCATCACGCCTTCAAAATTCAAACAAACATACGA
AACCACCCTGCACAAGCACCAGCAAAGCATGGAGACATCAATCCTTCCGT
CGCAGACATCGGTACCAGCGGTACCATCAGCAGGAGACGACGTCACTGCC
CCCTCCACGCTCATCAGCGTCACCTCTACAAACCATGCTCCGCCCACCTC
CACCCCTCCCCGTCGGCTTCCCCTCCTCCCCCCGACCAGCCCCCTCAACC
CATCCAGCAGCACTGCCGATGCCTTTGCCCAATCTACGTCATGCAAAACA
CCTCGCACATCTGACGATGACGATGGAGGAGGATTCAGCACCCCCGTCGC
TCCTACAACCGGCGCGCTGCACAGCACAGGCTCCGCTCTTCACCACAATC
ACCACCGCCGTCACTCCCACTGCTTGCAACACTCCCCTTCTCCTTCTCCT
TCCCAATCCATCAAACCTGATGCCTACGAAGGACGTGATCATGACCAAGA
TTGTCCCATATGCATGAGTCCCCTTGCCTCCAGGTCCATATACAAAACGC
GTTGCTCCCACAGGTTCCACAAATCGTGTCTGGTCGAGTCAAGGGCCGCA
CACATAAATGGATGTCCTTTCTGTAGGGGAGAAATCACCCCGGGGCTGAC
GCCGTTCGAAGCATGCCTGGGAAGGGTGTTAAGTGAGAGGGAACAGATCA
TCTCGAGGGCAAGAACAGCGAGGCAGGCTGTGCTGGCACGGATGCAGCAA
CGAGGGGAAGGGAGGGAAGGTGGAGGGAGGAGCTTGGCCTTTTCTGTGTT
GAGGGAGGAGGAGGTCCCGTATAGGGGAAGGAGGGGATTAGAGGAGCGGT
TTGAGACAGAGGCGATGGTAGGGGAAGGGGAGGAAGGGAGGGTGGGAGGG
GAGGGAGGGAGGAGGGTGGTGATGGCCTTGACGACGGAGGATTTGGGCCA
TCGGATTGACCATGAAGGGGATTTGCCTTTCTAG
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Synonyms
Publications