jgi.p|Nanoce1779_2|602337, mRNA_8054 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602337
Unique Name	mRNA_8054
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2391
Alignment location	scaffold_25:47963..50353 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602423
Track	FilteredModels2
ProteinId	602337

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:47963..50353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602337	gene_8054	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602337	mRNA_8054-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8054	CDS_8054	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:47963..50353+
coding sequence from alignment at scaffold_25:47963..50353+

mRNA sequence

>mRNA_8054 ID=mRNA_8054|Name=jgi.p|Nanoce1779_2|602337|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp
CAGGTCACAGCCCACGCACAGTCCTGCTTCTCCACGCCACCCGCCGTGGC
AACCCGCATTGCCGCATCGCGTTCTACGCCAAAACATGGCCGAGCACCAC
GATGACCACGACCACGGCGACGGGCACCGGGACCCGCCAAGCTTCCCCAT
TCAAGAAAAAAGTGCTATTTGGGGCCTCGTGCTGGCATTCGTGGCCTACT
TCCTCTGCCACAGCTTCGTCTACGTCGAGAATGACCCTACAGCCGTCGCA
GAAGCAAGTGCCCGGGGCCAGCGGGTGGAATGGACTTCCTTTGACAAGTT
CTACTCTCAAAGCCCGATCGTTTTCAAGCAACCCGCAGACCACGCGGAGC
TTTTACAGATACTGGAAGGTGCTGTCAGGGACAACCACACCGTTAAAGTG
GTGGGGGCGGGCCATAGTTGGACTCCCATCGGCTTGACCGACGGCGTCAT
GATCAACCTCGATAAATTCAACAAAATTTTTTCGATTGACGCAGTCCATA
AACGTGTCACCGTCCAGGCAGGTATTCGAATTCGTGACTTAAGCGCAGCC
CTCGCCGCAAATAAACCTCCGCTAGCACTGAGAAATACGGGGGTGCTAAA
CCGACAATCCCTCGCGGGCGCCTTGGCTACGGGCACGCATGGCACAGGTA
TCAACTATCAGATTATGTCTGCGGATATCGTATCGTTGGAGCTGATAACG
GCGGCGGGGGAAGTTCTCCGGGTGGGTCGGAATGAAGCGGACGCGGCCAT
GCGGGAGGTGTTCGAGGCCGCCACGGTGCATCTGGGAGGGCTTGGAGTCA
TCACGGAGGTAACCATGGAGGTGGTGAGTGCATTCTCAGTCGTTAAACGT
AGTCGATTGATGCCTTTGGAGGAAGTGGTGGGGGGTTTGGAGTCCTTGGC
GGAGGCGTCTGAGCATTTGCTGGTGTGGTATGTGCCTTACACCGAGACGG
CGCAACTGATGGAGGCGAATCGGACCGTGAGGAGTCAGATGATATCGGCG
ATGAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGACAACGGAATGGAAGC
AGAGGAGAAACAAGGGTCTTCACTCGTGTCCAAGCTGACAAGAGCCGTCC
ATTCCCCTCTTCTCCTTTACATTAGACCGTCTCTTGGCGTTCTGCAGGTC
CGCGTCTTATCCGCCGCCGGCTGGTTCTCCTCCCTCTTCCCCGTCGCCTG
CATCCCCTTCCTCAATCGCTACCTCGTGGCACCTTCCCTCCACATGTTCG
CGGGGGGCGTGAGCAGCTATTCGTTCTACCCTGAGGGATACCAGGGTATT
GTCTTGGGTAGGTTCAAATCAATGGTGATGGTGCTCAAGCTCTTCCCCCC
TTCCTTCCTCCCTCTCTCCCTCCCTGTCCCCCTTTCTCGATCGAAACCTT
TTCATACTGTCCTTCCCAGCATGCATCTGAATGATGAATGTCTGTTTTCA
TCCTTCTCTCCCTTCTTCTTTTCTCCCACCACACGCCACGCAACGCCATT
TCCTGACGTTTCTTTTCTCCCCCTCCCTCCCTCCCTTCTTCGCTCCCTCC
CTCCCTTCATCCAGACGACCACCCGGACCAATACCGTGAGGCCGAGTGGT
TCGTGCCTTTTGAAAACTTTCCCGCGGCTTTCGCGGACTTCCAGGCGTTT
TTATCAGAGAGGAAAGGGAAGATCGGAGCAAATTTTGTAGTACAGCTGAG
GGTTACGAAGGGCGATGAGTTATGGTTGAGTCCTTTTCGGAGGAGTAGAG
GCAGCTGCAGGGGCAGTGAGATCGAAGGCGAGGAGAAGGGGGGAGGGGGA
GGAGAAGGAGGAAGAGAAAGAGGAGAAGGAGCATCGTCGTGGTATGTATC
GATTGCCACGCTGGTAAAAGGCTATGATTGCGAGCCTTACTTCAAAGCAG
CAGAAGACTTGGTTTGGATCCCTCACGGGGCAAAACCTCACTGGGGGAAA
CTCCACTATCTAAATTATAACCAATTATCGCGCATGTACGGGGAAGAGTA
CGAGAGGTATCTGTCGGTCCGACGGAGGCTGGACCCACGGGATGTGTTCT
TGAACCAGCACCTCCGGGAATTGTTCTTGGAGAGGGCGATCCGATGAGGA
GGGGGAGGAGGGAGCGAGGGAGAGAGAGAAGGAGGGACGGTGTCTGTGGG
AAGGTGATGATCTGGAAAGTACCTTGTATACAAGAAGTTGAAATTTTAAT
GACGAAGGATTAAATAAGATTAAGAAAACCGATTAAATTTGACTGAGAAA
ACCGATTTAATTAGGCCGACAATACCAATTAAATTAGATTGAGGAAAGCG
ATAAAACTAGATAGATAGAGGGATGCAGAGGGAGAGAGAGAGGGGGGGGA
GAAAAATTCTCCCACACAACTTGAACAATGTATCGGTGGCA

protein sequence of jgi.p|Nanoce1779_2|602337

>mRNA_8054-protein ID=mRNA_8054-protein|Name=jgi.p|Nanoce1779_2|602337|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MAEHHDDHDHGDGHRDPPSFPIQEKSAIWGLVLAFVAYFLCHSFVYVEND
PTAVAEASARGQRVEWTSFDKFYSQSPIVFKQPADHAELLQILEGAVRDN
HTVKVVGAGHSWTPIGLTDGVMINLDKFNKIFSIDAVHKRVTVQAGIRIR
DLSAALAANKPPLALRNTGVLNRQSLAGALATGTHGTGINYQIMSADIVS
LELITAAGEVLRVGRNEADAAMREVFEAATVHLGGLGVITEVTMEVVSAF
SVVKRSRLMPLEEVVGGLESLAEASEHLLVWYVPYTETAQLMEANRTVRS
QMISAMSSSSSSSSSDDNGMEAEEKQGSSLVSKLTRAVHSPLLLYIRPSL
GVLQVRVLSAAGWFSSLFPVACIPFLNRYLVAPSLHMFAGGVSSYSFYPE
GYQGIVLGRFKSMVMVLKLFPPSFLPLSLPVPLSRSKPFHTVLPSMHLND
ECLFSSFSPFFFSPTTRHATPFPDVSFLPLPPSLLRSLPPFIQTTTRTNT
VRPSGSCLLKTFPRLSRTSRRFYQRGKGRSEQIL*

mRNA from alignment at scaffold_25:47963..50353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8054 ID=mRNA_8054|Name=jgi.p|Nanoce1779_2|602337|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp|location=Sequence derived from alignment at scaffold_25:47963..50353+ (Nannochloropsis oceanica)
CAGGTCACAGCCCACGCACAGTCCTGCTTCTCCACGCCACCCGCCGTGGC
AACCCGCATTGCCGCATCGCGTTCTACGCCAAAACATGGCCGAGCACCAC
GATGACCACGACCACGGCGACGGGCACCGGGACCCGCCAAGCTTCCCCAT
TCAAGAAAAAAGTGCTATTTGGGGCCTCGTGCTGGCATTCGTGGCCTACT
TCCTCTGCCACAGCTTCGTCTACGTCGAGAATGACCCTACAGCCGTCGCA
GAAGCAAGTGCCCGGGGCCAGCGGGTGGAATGGACTTCCTTTGACAAGTT
CTACTCTCAAAGCCCGATCGTTTTCAAGCAACCCGCAGACCACGCGGAGC
TTTTACAGATACTGGAAGGTGCTGTCAGGGACAACCACACCGTTAAAGTG
GTGGGGGCGGGCCATAGTTGGACTCCCATCGGCTTGACCGACGGCGTCAT
GATCAACCTCGATAAATTCAACAAAATTTTTTCGATTGACGCAGTCCATA
AACGTGTCACCGTCCAGGCAGGTATTCGAATTCGTGACTTAAGCGCAGCC
CTCGCCGCAAATAAACCTCCGCTAGCACTGAGAAATACGGGGGTGCTAAA
CCGACAATCCCTCGCGGGCGCCTTGGCTACGGGCACGCATGGCACAGGTA
TCAACTATCAGATTATGTCTGCGGATATCGTATCGTTGGAGCTGATAACG
GCGGCGGGGGAAGTTCTCCGGGTGGGTCGGAATGAAGCGGACGCGGCCAT
GCGGGAGGTGTTCGAGGCCGCCACGGTGCATCTGGGAGGGCTTGGAGTCA
TCACGGAGGTAACCATGGAGGTGGTGAGTGCATTCTCAGTCGTTAAACGT
AGTCGATTGATGCCTTTGGAGGAAGTGGTGGGGGGTTTGGAGTCCTTGGC
GGAGGCGTCTGAGCATTTGCTGGTGTGGTATGTGCCTTACACCGAGACGG
CGCAACTGATGGAGGCGAATCGGACCGTGAGGAGTCAGATGATATCGGCG
ATGAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGACAACGGAATGGAAGC
AGAGGAGAAACAAGGGTCTTCACTCGTGTCCAAGCTGACAAGAGCCGTCC
ATTCCCCTCTTCTCCTTTACATTAGACCGTCTCTTGGCGTTCTGCAGGTC
CGCGTCTTATCCGCCGCCGGCTGGTTCTCCTCCCTCTTCCCCGTCGCCTG
CATCCCCTTCCTCAATCGCTACCTCGTGGCACCTTCCCTCCACATGTTCG
CGGGGGGCGTGAGCAGCTATTCGTTCTACCCTGAGGGATACCAGGGTATT
GTCTTGGGTAGGTTCAAATCAATGGTGATGGTGCTCAAGCTCTTCCCCCC
TTCCTTCCTCCCTCTCTCCCTCCCTGTCCCCCTTTCTCGATCGAAACCTT
TTCATACTGTCCTTCCCAGCATGCATCTGAATGATGAATGTCTGTTTTCA
TCCTTCTCTCCCTTCTTCTTTTCTCCCACCACACGCCACGCAACGCCATT
TCCTGACGTTTCTTTTCTCCCCCTCCCTCCCTCCCTTCTTCGCTCCCTCC
CTCCCTTCATCCAGACGACCACCCGGACCAATACCGTGAGGCCGAGTGGT
TCGTGCCTTTTGAAAACTTTCCCGCGGCTTTCGCGGACTTCCAGGCGTTT
TTATCAGAGAGGAAAGGGAAGATCGGAGCAAATTTTGTAGTACAGCTGAG
GGTTACGAAGGGCGATGAGTTATGGTTGAGTCCTTTTCGGAGGAGTAGAG
GCAGCTGCAGGGGCAGTGAGATCGAAGGCGAGGAGAAGGGGGGAGGGGGA
GGAGAAGGAGGAAGAGAAAGAGGAGAAGGAGCATCGTCGTGGTATGTATC
GATTGCCACGCTGGTAAAAGGCTATGATTGCGAGCCTTACTTCAAAGCAG
CAGAAGACTTGGTTTGGATCCCTCACGGGGCAAAACCTCACTGGGGGAAA
CTCCACTATCTAAATTATAACCAATTATCGCGCATGTACGGGGAAGAGTA
CGAGAGGTATCTGTCGGTCCGACGGAGGCTGGACCCACGGGATGTGTTCT
TGAACCAGCACCTCCGGGAATTGTTCTTGGAGAGGGCGATCCGATGAGGA
GGGGGAGGAGGGAGCGAGGGAGAGAGAGAAGGAGGGACGGTGTCTGTGGG
AAGGTGATGATCTGGAAAGTACCTTGTATACAAGAAGTTGAAATTTTAAT
GACGAAGGATTAAATAAGATTAAGAAAACCGATTAAATTTGACTGAGAAA
ACCGATTTAATTAGGCCGACAATACCAATTAAATTAGATTGAGGAAAGCG
ATAAAACTAGATAGATAGAGGGATGCAGAGGGAGAGAGAGAGGGGGGGGA
GAAAAATTCTCCCACACAACTTGAACAATGTATCGGTGGCA

Coding sequence (CDS) from alignment at scaffold_25:47963..50353+

>mRNA_8054 ID=mRNA_8054|Name=jgi.p|Nanoce1779_2|602337|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at scaffold_25:47963..50353+ (Nannochloropsis oceanica)
ATGGCCGAGCACCACGATGACCACGACCACGGCGACGGGCACCGGGACCC
GCCAAGCTTCCCCATTCAAGAAAAAAGTGCTATTTGGGGCCTCGTGCTGG
CATTCGTGGCCTACTTCCTCTGCCACAGCTTCGTCTACGTCGAGAATGAC
CCTACAGCCGTCGCAGAAGCAAGTGCCCGGGGCCAGCGGGTGGAATGGAC
TTCCTTTGACAAGTTCTACTCTCAAAGCCCGATCGTTTTCAAGCAACCCG
CAGACCACGCGGAGCTTTTACAGATACTGGAAGGTGCTGTCAGGGACAAC
CACACCGTTAAAGTGGTGGGGGCGGGCCATAGTTGGACTCCCATCGGCTT
GACCGACGGCGTCATGATCAACCTCGATAAATTCAACAAAATTTTTTCGA
TTGACGCAGTCCATAAACGTGTCACCGTCCAGGCAGGTATTCGAATTCGT
GACTTAAGCGCAGCCCTCGCCGCAAATAAACCTCCGCTAGCACTGAGAAA
TACGGGGGTGCTAAACCGACAATCCCTCGCGGGCGCCTTGGCTACGGGCA
CGCATGGCACAGGTATCAACTATCAGATTATGTCTGCGGATATCGTATCG
TTGGAGCTGATAACGGCGGCGGGGGAAGTTCTCCGGGTGGGTCGGAATGA
AGCGGACGCGGCCATGCGGGAGGTGTTCGAGGCCGCCACGGTGCATCTGG
GAGGGCTTGGAGTCATCACGGAGGTAACCATGGAGGTGGTGAGTGCATTC
TCAGTCGTTAAACGTAGTCGATTGATGCCTTTGGAGGAAGTGGTGGGGGG
TTTGGAGTCCTTGGCGGAGGCGTCTGAGCATTTGCTGGTGTGGTATGTGC
CTTACACCGAGACGGCGCAACTGATGGAGGCGAATCGGACCGTGAGGAGT
CAGATGATATCGGCGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGA
CAACGGAATGGAAGCAGAGGAGAAACAAGGGTCTTCACTCGTGTCCAAGC
TGACAAGAGCCGTCCATTCCCCTCTTCTCCTTTACATTAGACCGTCTCTT
GGCGTTCTGCAGGTCCGCGTCTTATCCGCCGCCGGCTGGTTCTCCTCCCT
CTTCCCCGTCGCCTGCATCCCCTTCCTCAATCGCTACCTCGTGGCACCTT
CCCTCCACATGTTCGCGGGGGGCGTGAGCAGCTATTCGTTCTACCCTGAG
GGATACCAGGGTATTGTCTTGGGTAGGTTCAAATCAATGGTGATGGTGCT
CAAGCTCTTCCCCCCTTCCTTCCTCCCTCTCTCCCTCCCTGTCCCCCTTT
CTCGATCGAAACCTTTTCATACTGTCCTTCCCAGCATGCATCTGAATGAT
GAATGTCTGTTTTCATCCTTCTCTCCCTTCTTCTTTTCTCCCACCACACG
CCACGCAACGCCATTTCCTGACGTTTCTTTTCTCCCCCTCCCTCCCTCCC
TTCTTCGCTCCCTCCCTCCCTTCATCCAGACGACCACCCGGACCAATACC
GTGAGGCCGAGTGGTTCGTGCCTTTTGAAAACTTTCCCGCGGCTTTCGCG
GACTTCCAGGCGTTTTTATCAGAGAGGAAAGGGAAGATCGGAGCAAATTT
TGTAG

Synonyms

Publications