jgi.p|Nanoce1779_2|602335, mRNA_8053 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602335
Unique NamemRNA_8053
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1035
Alignment locationscaffold_25:46770..47804 +

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Properties
Property NameValue
TranscriptId602421
TrackFilteredModels2
ProteinId602335
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:46770..47804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602335gene_8053Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602335mRNA_8053-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8053CDS_8053Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8053 ID=mRNA_8053|Name=jgi.p|Nanoce1779_2|602335|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
GTGTGTGTTGAACGGAGCGATATATAGAGGAAGAGTAAGAGTGGGCGATC
GGCTTTTACTAGGGCCGGAGAAGAAGGGAGGAGGAGGGGGAGAAGGAGGA
GGAGAAGGAGGAGGAGAGGAAGGACGAAGGGGAGGCGAGTTCGAGATGGT
GGTGGTGAAAAGTATGCATTTGCATTGGGTGCCGGTAAGGGAGGCGGGGG
CGGGGCAATGCGTGACTTTGAGCTTTGACAAGATAAAAGGATGTGAGGAT
GAGGGCGAGAAGAAGGAGAATGAGAACGAGGACGAGCACGAGGAGGACGA
GGAGGGGGTGAATTTGGCCGCTAGGCGCTACGGCCTTGGTAGAGGTAGCA
ACAGCGTCTACGACAAGCACGACGAGAATGATGAGAACGACGAACTTCTT
CCGTTGCCTCCTTCATCCAAAGCCATTAAAAGCTACAAAGGCTGCGTCCT
CGTGTCTCCTTCTGCCAATCCCCTTGCCACCTTTGAATTTACTGCTGAAA
TTCTCATCTTAAACGATGCCCATGGTCCCTTGTCCTGCAACCAAGAACCA
TCCGTGCACATCTACACGACCCGACAAACGGCCAAGCTGATGAGTATGGA
TGACGACAAGATTGATGACGAGGGAAGGAAGAGGATTGTGGCTTGTAAGG
GTGAAACGGTGCGAGCTCGGTTTCGCTTTCTGTTTCATGCTGAGTATGTG
AGGGAGGGAATGCGGGTGGTTGTGAGGAGCGGGCGGACGATCGCGGTGGG
AAGGGTAGTCATGTGAGGAGCGAAAAAGAGGAGTGAGAAGACGATGCCCC
GGCCGCCACCACCTTTAGAATGCACATACAAGAATATTGGAAATGAACGA
AGGGATGGGGAGGTTATTTGTGCGTGTATAATTATGAAAAATAGAGAGGC
AGCAGCAAGGAAAACACAATCCGCATTGCTTGTTGTGCATTTAATGTGAA
AAAGAATGTGAGCCAGATGCCTCCGTAGACTTGAAATAGGGTACACAAAC
CACAAAGAACGAAAAGAAACTTACGGCCATGCTAA
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protein sequence of jgi.p|Nanoce1779_2|602335

>mRNA_8053-protein ID=mRNA_8053-protein|Name=jgi.p|Nanoce1779_2|602335|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MVVVKSMHLHWVPVREAGAGQCVTLSFDKIKGCEDEGEKKENENEDEHEE
DEEGVNLAARRYGLGRGSNSVYDKHDENDENDELLPLPPSSKAIKSYKGC
VLVSPSANPLATFEFTAEILILNDAHGPLSCNQEPSVHIYTTRQTAKLMS
MDDDKIDDEGRKRIVACKGETVRARFRFLFHAEYVREGMRVVVRSGRTIA
VGRVVM*
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mRNA from alignment at scaffold_25:46770..47804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8053 ID=mRNA_8053|Name=jgi.p|Nanoce1779_2|602335|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at scaffold_25:46770..47804+ (Nannochloropsis oceanica)
GTGTGTGTTGAACGGAGCGATATATAGAGGAAGAGTAAGAGTGGGCGATC
GGCTTTTACTAGGGCCGGAGAAGAAGGGAGGAGGAGGGGGAGAAGGAGGA
GGAGAAGGAGGAGGAGAGGAAGGACGAAGGGGAGGCGAGTTCGAGATGGT
GGTGGTGAAAAGTATGCATTTGCATTGGGTGCCGGTAAGGGAGGCGGGGG
CGGGGCAATGCGTGACTTTGAGCTTTGACAAGATAAAAGGATGTGAGGAT
GAGGGCGAGAAGAAGGAGAATGAGAACGAGGACGAGCACGAGGAGGACGA
GGAGGGGGTGAATTTGGCCGCTAGGCGCTACGGCCTTGGTAGAGGTAGCA
ACAGCGTCTACGACAAGCACGACGAGAATGATGAGAACGACGAACTTCTT
CCGTTGCCTCCTTCATCCAAAGCCATTAAAAGCTACAAAGGCTGCGTCCT
CGTGTCTCCTTCTGCCAATCCCCTTGCCACCTTTGAATTTACTGCTGAAA
TTCTCATCTTAAACGATGCCCATGGTCCCTTGTCCTGCAACCAAGAACCA
TCCGTGCACATCTACACGACCCGACAAACGGCCAAGCTGATGAGTATGGA
TGACGACAAGATTGATGACGAGGGAAGGAAGAGGATTGTGGCTTGTAAGG
GTGAAACGGTGCGAGCTCGGTTTCGCTTTCTGTTTCATGCTGAGTATGTG
AGGGAGGGAATGCGGGTGGTTGTGAGGAGCGGGCGGACGATCGCGGTGGG
AAGGGTAGTCATGTGAGGAGCGAAAAAGAGGAGTGAGAAGACGATGCCCC
GGCCGCCACCACCTTTAGAATGCACATACAAGAATATTGGAAATGAACGA
AGGGATGGGGAGGTTATTTGTGCGTGTATAATTATGAAAAATAGAGAGGC
AGCAGCAAGGAAAACACAATCCGCATTGCTTGTTGTGCATTTAATGTGAA
AAAGAATGTGAGCCAGATGCCTCCGTAGACTTGAAATAGGGTACACAAAC
CACAAAGAACGAAAAGAAACTTACGGCCATGCTAA
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Coding sequence (CDS) from alignment at scaffold_25:46770..47804+

>mRNA_8053 ID=mRNA_8053|Name=jgi.p|Nanoce1779_2|602335|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_25:46770..47804+ (Nannochloropsis oceanica)
ATGGTGGTGGTGAAAAGTATGCATTTGCATTGGGTGCCGGTAAGGGAGGC
GGGGGCGGGGCAATGCGTGACTTTGAGCTTTGACAAGATAAAAGGATGTG
AGGATGAGGGCGAGAAGAAGGAGAATGAGAACGAGGACGAGCACGAGGAG
GACGAGGAGGGGGTGAATTTGGCCGCTAGGCGCTACGGCCTTGGTAGAGG
TAGCAACAGCGTCTACGACAAGCACGACGAGAATGATGAGAACGACGAAC
TTCTTCCGTTGCCTCCTTCATCCAAAGCCATTAAAAGCTACAAAGGCTGC
GTCCTCGTGTCTCCTTCTGCCAATCCCCTTGCCACCTTTGAATTTACTGC
TGAAATTCTCATCTTAAACGATGCCCATGGTCCCTTGTCCTGCAACCAAG
AACCATCCGTGCACATCTACACGACCCGACAAACGGCCAAGCTGATGAGT
ATGGATGACGACAAGATTGATGACGAGGGAAGGAAGAGGATTGTGGCTTG
TAAGGGTGAAACGGTGCGAGCTCGGTTTCGCTTTCTGTTTCATGCTGAGT
ATGTGAGGGAGGGAATGCGGGTGGTTGTGAGGAGCGGGCGGACGATCGCG
GTGGGAAGGGTAGTCATGTGA
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Synonyms
Publications