jgi.p|Nanoce1779_2|602332, mRNA_8052 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602332
Unique NamemRNA_8052
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1381
Alignment locationscaffold_25:44097..45477 -

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Properties
Property NameValue
TranscriptId602418
TrackFilteredModels2
ProteinId602332
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:44097..45477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602332gene_8052Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602332mRNA_8052-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8052CDS_8052Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8052 ID=mRNA_8052|Name=jgi.p|Nanoce1779_2|602332|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp
GCCGCCATTGTCCACCAAGAGAGGAAGAGTAGGAGGAGTAAGAAGAGAAT
GAGGAGGAGGAGGAGGAGAGAAGCATGAAGGAGGAGGAAGAGGAGGAGAA
GAAGGTGGAGGAGCACAGTCACCATTCCCACCACCAACAGCAGGACCAGC
ACTACCGCCCTCGTCTACCCTGTAGTTGGTAACGCTCCCATCCTCTCGAA
ACCCCAATATATGCTGACTCACGCTGGATGTCCGTCCATTCTCTACTTCA
TGATTATGCTTCAAGACCTGCATCCGGGCCAAGCCCCTCCCGTTGTCCAG
CCTCCCCTTCGTCAGCACCCCTACCAACGTACTCTTCCCTCCCTCTCCCC
CCCCCAACACCGCCACCCGCACATGTTCGTGCCCACTGTGCAAGTCCACT
ACTTCCACCACCTCCCTTTTCAATCTCACCTCCGCCACTTTCTTCGCCCC
TCCTCCCCCTATCCCTCCCTCGCTTCCTTCCCCTCCTCTCTCGGTTCCCG
CTCCACGCGAGATTTTCACATCAACTATACATGCATTCACGCCTTTCGCC
ATGCGCCTGAGTGTCACTAAAGACTCTCTGAAATCGCCTTCGGATATACC
TTCCGGAAAGCCATCATCACGGACACCGATTAAATAGATGGCCTCGCCTT
GGCTCGATTCATTCAGGCGCCAGTGGAGCTGGGTCGTCAAGTGAGTAAGT
CTCTCGGGAGAGGTGTTGGTCAAGCGCCACTTATGCTCGACGTTTCCTTC
CTCGATTTCATGGCCAAAATGTGGGGCAATGGCTAAGAAAGAGGGAGATG
AGGAGGATGTGGTAGCGGTAGTTGTTGTGGTGGTGGTACGAGAAAACAGA
TCGGTGCCCTCGCTCCGAGAACGGCATTTGCGTGTGCTGGAGCTGCTGGT
GCTGGTGGAGGCGGGGGGAGAAAGAGGGGCGCGACGGGCGGCTGTTTGCG
CGGTTGGCATTCTGCTGTAATTCTACTTGATTTTATGGCAAGTGCTGGTA
CAGGTTATTTGCTGTAGCGTTGAGCGATTGCCAATGTTTTTCCTAGGATT
TAGGTCTCTCTTCTTCTACAGCTGCAGCTGCTTGGGAATGGAGAGACTCG
TCTTCTTGGGGCACGTGATGATAAAGACGGCGGGGTTTTGCTTACAACGG
TGATAGTTACGGTGCTTATACTGCTGCTGGTACTGGTCATGATCTCTCGC
GGCTGCGCCAGGTCAATCTTTTTTGCCGTATAAATAACAGGATGATGATG
CTCCCTCTTTCACTTTGCGAGGATTAGAACTCCGCTCAGCACGCCGTCAT
CCCTCCAAACCTTGGAGGTACACACAGACGGGTGATATAGGAGGAAAGAG
AGGTTGTGCTTGATGCAGCTGAGCTACCTGT
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protein sequence of jgi.p|Nanoce1779_2|602332

>mRNA_8052-protein ID=mRNA_8052-protein|Name=jgi.p|Nanoce1779_2|602332|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MLTHAGCPSILYFMIMLQDLHPGQAPPVVQPPLRQHPYQRTLPSLSPPQH
RHPHMFVPTVQVHYFHHLPFQSHLRHFLRPSSPYPSLASFPSSLGSRSTR
DFHINYTCIHAFRHAPECH*
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mRNA from alignment at scaffold_25:44097..45477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8052 ID=mRNA_8052|Name=jgi.p|Nanoce1779_2|602332|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp|location=Sequence derived from alignment at scaffold_25:44097..45477- (Nannochloropsis oceanica)
GCCGCCATTGTCCACCAAGAGAGGAAGAGTAGGAGGAGTAAGAAGAGAAT
GAGGAGGAGGAGGAGGAGAGAAGCATGAAGGAGGAGGAAGAGGAGGAGAA
GAAGGTGGAGGAGCACAGTCACCATTCCCACCACCAACAGCAGGACCAGC
ACTACCGCCCTCGTCTACCCTGTAGTTGGTAACGCTCCCATCCTCTCGAA
ACCCCAATATATGCTGACTCACGCTGGATGTCCGTCCATTCTCTACTTCA
TGATTATGCTTCAAGACCTGCATCCGGGCCAAGCCCCTCCCGTTGTCCAG
CCTCCCCTTCGTCAGCACCCCTACCAACGTACTCTTCCCTCCCTCTCCCC
CCCCCAACACCGCCACCCGCACATGTTCGTGCCCACTGTGCAAGTCCACT
ACTTCCACCACCTCCCTTTTCAATCTCACCTCCGCCACTTTCTTCGCCCC
TCCTCCCCCTATCCCTCCCTCGCTTCCTTCCCCTCCTCTCTCGGTTCCCG
CTCCACGCGAGATTTTCACATCAACTATACATGCATTCACGCCTTTCGCC
ATGCGCCTGAGTGTCACTAAAGACTCTCTGAAATCGCCTTCGGATATACC
TTCCGGAAAGCCATCATCACGGACACCGATTAAATAGATGGCCTCGCCTT
GGCTCGATTCATTCAGGCGCCAGTGGAGCTGGGTCGTCAAGTGAGTAAGT
CTCTCGGGAGAGGTGTTGGTCAAGCGCCACTTATGCTCGACGTTTCCTTC
CTCGATTTCATGGCCAAAATGTGGGGCAATGGCTAAGAAAGAGGGAGATG
AGGAGGATGTGGTAGCGGTAGTTGTTGTGGTGGTGGTACGAGAAAACAGA
TCGGTGCCCTCGCTCCGAGAACGGCATTTGCGTGTGCTGGAGCTGCTGGT
GCTGGTGGAGGCGGGGGGAGAAAGAGGGGCGCGACGGGCGGCTGTTTGCG
CGGTTGGCATTCTGCTGTAATTCTACTTGATTTTATGGCAAGTGCTGGTA
CAGGTTATTTGCTGTAGCGTTGAGCGATTGCCAATGTTTTTCCTAGGATT
TAGGTCTCTCTTCTTCTACAGCTGCAGCTGCTTGGGAATGGAGAGACTCG
TCTTCTTGGGGCACGTGATGATAAAGACGGCGGGGTTTTGCTTACAACGG
TGATAGTTACGGTGCTTATACTGCTGCTGGTACTGGTCATGATCTCTCGC
GGCTGCGCCAGGTCAATCTTTTTTGCCGTATAAATAACAGGATGATGATG
CTCCCTCTTTCACTTTGCGAGGATTAGAACTCCGCTCAGCACGCCGTCAT
CCCTCCAAACCTTGGAGGTACACACAGACGGGTGATATAGGAGGAAAGAG
AGGTTGTGCTTGATGCAGCTGAGCTACCTGT
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Coding sequence (CDS) from alignment at scaffold_25:44097..45477-

>mRNA_8052 ID=mRNA_8052|Name=jgi.p|Nanoce1779_2|602332|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_25:44097..45477- (Nannochloropsis oceanica)
ATGCTGACTCACGCTGGATGTCCGTCCATTCTCTACTTCATGATTATGCT
TCAAGACCTGCATCCGGGCCAAGCCCCTCCCGTTGTCCAGCCTCCCCTTC
GTCAGCACCCCTACCAACGTACTCTTCCCTCCCTCTCCCCCCCCCAACAC
CGCCACCCGCACATGTTCGTGCCCACTGTGCAAGTCCACTACTTCCACCA
CCTCCCTTTTCAATCTCACCTCCGCCACTTTCTTCGCCCCTCCTCCCCCT
ATCCCTCCCTCGCTTCCTTCCCCTCCTCTCTCGGTTCCCGCTCCACGCGA
GATTTTCACATCAACTATACATGCATTCACGCCTTTCGCCATGCGCCTGA
GTGTCACTAA
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Synonyms
Publications