jgi.p|Nanoce1779_2|602330, mRNA_8051 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602330
Unique Name	mRNA_8051
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2136
Alignment location	scaffold_25:41993..44171 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602416
Track	FilteredModels2
ProteinId	602330

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:41993..44171 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602330	gene_8051	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602330	mRNA_8051-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8051	CDS_8051	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:41993..44171+
coding sequence from alignment at scaffold_25:41993..44171+

mRNA sequence

>mRNA_8051 ID=mRNA_8051|Name=jgi.p|Nanoce1779_2|602330|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
AGACACACCCACAGCTGATAAACATGGCCGCGCTTCCCGTCCGCATGGCG
GTCTTCGTCCTGGCTGTTCTTTCGTTCGTCTTCTTCCTGGCGCCGGCGGC
TTCTTCCCCTGCTGTTTCAAGCGCCATCAACAGCAACAAGGACGTCGTCC
AGCTCTTTCATAAGAGGCATATTCGAAGCTCTCACCATTTTCATTCTCTG
CCTCGCATCCCATCACGTGCGCTGCTGCTATCGCAAATCCGCGGCGGTGG
CGGTGGCAACAGCAAGGCTACCGCTACCATCGGAGCTCCCCCTGGGACGA
GCACATTGATGGCCTCCATCGTCAATTTGGCCAAAAATATCATAGGAGGG
GGCATGCTTGCTTTGCCTGCCGGCCTGGCCGCAGGGGCAGGGACGGGCTC
CGCGTATACGTTCATTTTGGTGGGGAGGTCGGTAGAGGCGACAAAGTCTC
ATTCCTTCAAGGAGGCATGGTCGAGGACCGTCGGACCGAGCCACGCATGG
ATAGTGGACTACGCGATCACCGCCTTGGCGTTTGGGGTGTGCATTGTGTA
TGCGTGCTTTGTGGGGGATACCTTTACGTCTTTGTTGAAAGGGGCAGGCC
TTCCTGAGTGGCTGTCGAGTCGAGAAGCGAGCATCCTCGGTGTGACCTTG
ACTGTGTTGTTTCCTTTGACGTTATTGAGAGATTTGAGTGCCTTGCAGTA
CAGTTCGTATGTGGGTATCGGTGCCGTTCTTTACACGGTTGTGTTTATTG
CCTTGAGGTGGTATGATGGGAGTTACGCCAAGGGAGGGAGGTTCTTCGCG
GCTATCCCTTCTTATTTGCGTCCTCGTCCCGCGGAATTTGGACAGTGGAA
GATGTCGGCGGGTACATCTATTCTGTTCAGCATGTTCTCGACCAGTTATA
TGGCACATACGAACGCGGTCAAATATTACAACGAGCTGGAGGGGAGGAGC
GTCGGGAGATTCACACAGGTTGTGGGGGTGGCGATGGGCGCGGCGACGGT
GATTTATTTGAGCGCTATGGTCCTGGGCTTTGAGACTTTCGGACTTGCAA
GCCAGGGGCTGGTCTTGAACAATTATCATGTCTCGAAAGACATGCTTGCA
ACACTGGGGAGGGTGGCGACGGCGGTATCGATCATTGGCGCGCACCCTCT
TTTATTTTCGGGCTTGAGGGACTCTTTTTTGAATGTACTGCCGCCAGCCA
TGAGCACCAAGAAGGAGGCCTGGTTCCTTTCGACTGTGGGCTTGTTGGCG
GGGGCGACGGGTCTGTCGTTGCTGTGTAAAGACGTAGGGATGATCGTTAG
TCTGGTGGGGTCGTCTCTGGGGGCTTTGATTGTGTACGTGTTCCCCCCCT
TGATGTTCCTGCATTTGTTGCGGAAGAATAAGGGAGAGATCAAGACAAGC
GGCGCAGAGATCTTGTTGTTGCATGCCACAATCGTGTTCGGGATTGTGAG
TGGGTGTTACGGGACGTGGGTCACCTTGTCGGGGGGTGGGGGGTAAATGA
GCGTCAAAAGGAAACTAGGAATAGGGCAAGCTTGGTAGAGGAAATGAAGG
TTGTATGAAGATGAATGGATATGGGCTGTCTGACTTTTCCTCGTGAAAAG
TGAGGCAGCTGGAAAATGGAAAAATCAACACGAGAATAATTTTTGGTATG
AGGTGTCACAATTATTGTGCGTTCGTCCAGATTTTTTTTAAATTATGAAC
TGTAACAAAAATGTGCTTGATACAACCTGCACTTCGATATCACGTGTTGT
GCGTTTCCTGTGGACACTCTCCTCACCTGAGGGTGCTCGAATTCCGTCTC
GAACCGACCCGGAAGGGGAGCCACCAATCAACCATGGCGGGCTTTTCTTG
CATGTTTTGGGATGTTCTCTGACTATGTGTGGGCACGAGCGCTACCATGC
GCCTAGTTTATAGAGAAATGAAAACGCCATTTTCTACCTGATTAGCTGCT
CGCTGCTTGTGACTGTCCATGGCGGCAGCACTTCCCTCTCCCCTATACCT
TGGTTCTGGCTAGCCGGGTCACTCACACCATGCATGCCCGTTTTTAACAC
CCACCATGACCACAGGTAGCTCAGCTGCATCAAGCACAACCTCTCTTTCC
TCCTATATCACCCGTCTGTGTGTACCTCCAAGGTTT

protein sequence of jgi.p|Nanoce1779_2|602330

>mRNA_8051-protein ID=mRNA_8051-protein|Name=jgi.p|Nanoce1779_2|602330|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAALPVRMAVFVLAVLSFVFFLAPAASSPAVSSAINSNKDVVQLFHKRHI
RSSHHFHSLPRIPSRALLLSQIRGGGGGNSKATATIGAPPGTSTLMASIV
NLAKNIIGGGMLALPAGLAAGAGTGSAYTFILVGRSVEATKSHSFKEAWS
RTVGPSHAWIVDYAITALAFGVCIVYACFVGDTFTSLLKGAGLPEWLSSR
EASILGVTLTVLFPLTLLRDLSALQYSSYVGIGAVLYTVVFIALRWYDGS
YAKGGRFFAAIPSYLRPRPAEFGQWKMSAGTSILFSMFSTSYMAHTNAVK
YYNELEGRSVGRFTQVVGVAMGAATVIYLSAMVLGFETFGLASQGLVLNN
YHVSKDMLATLGRVATAVSIIGAHPLLFSGLRDSFLNVLPPAMSTKKEAW
FLSTVGLLAGATGLSLLCKDVGMIVSLVGSSLGALIVYVFPPLMFLHLLR
KNKGEIKTSGAEILLLHATIVFGIVSGCYGTWVTLSGGGG*

mRNA from alignment at scaffold_25:41993..44171+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8051 ID=mRNA_8051|Name=jgi.p|Nanoce1779_2|602330|organism=Nannochloropsis oceanica|type=mRNA|length=2179bp|location=Sequence derived from alignment at scaffold_25:41993..44171+ (Nannochloropsis oceanica)
AGACACACCCACAGCTGATAAACATGGCCGCGCTTCCCGTCCGCATGGCG
GTCTTCGTCCTGGCTGTTCTTTCGTTCGTCTTCTTCCTGGCGCCGGCGGC
TTCTTCCCCTGCTGTTTCAAGCGCCATCAACAGCAACAAGGACGTCGTCC
AGCTCTTTCATAAGAGGCATATTCGAAGCTCTCACCATTTTCATTCTCTG
CCTCGCATCCCATCACGTGCGCTGCTGCTATCGCAAATCCGCGGCGGTGG
CGGTGGCAACAGCAAGGCTACCGCTACCATCGGAGCTCCCCCTGGGACGA
GCACATTGATGGCCTCCATCGTCAATTTGGCCAAAAATATCATAGGAGGG
GGCATGCTTGCTTTGCCTGCCGGCCTGGCCGCAGGGGCAGGGACGGGGTA
TATACCCGCTTTTTTGCTGTTGGCGTTCCTCGGCGGTTAGCTCCGCGTAT
ACGTTCATTTTGGTGGGGAGGTCGGTAGAGGCGACAAAGTCTCATTCCTT
CAAGGAGGCATGGTCGAGGACCGTCGGACCGAGCCACGCATGGATAGTGG
ACTACGCGATCACCGCCTTGGCGTTTGGGGTGTGCATTGTGTATGCGTGC
TTTGTGGGGGATACCTTTACGTCTTTGTTGAAAGGGGCAGGCCTTCCTGA
GTGGCTGTCGAGTCGAGAAGCGAGCATCCTCGGTGTGACCTTGACTGTGT
TGTTTCCTTTGACGTTATTGAGAGATTTGAGTGCCTTGCAGTACAGTTCG
TATGTGGGTATCGGTGCCGTTCTTTACACGGTTGTGTTTATTGCCTTGAG
GTGGTATGATGGGAGTTACGCCAAGGGAGGGAGGTTCTTCGCGGCTATCC
CTTCTTATTTGCGTCCTCGTCCCGCGGAATTTGGACAGTGGAAGATGTCG
GCGGGTACATCTATTCTGTTCAGCATGTTCTCGACCAGTTATATGGCACA
TACGAACGCGGTCAAATATTACAACGAGCTGGAGGGGAGGAGCGTCGGGA
GATTCACACAGGTTGTGGGGGTGGCGATGGGCGCGGCGACGGTGATTTAT
TTGAGCGCTATGGTCCTGGGCTTTGAGACTTTCGGACTTGCAAGCCAGGG
GCTGGTCTTGAACAATTATCATGTCTCGAAAGACATGCTTGCAACACTGG
GGAGGGTGGCGACGGCGGTATCGATCATTGGCGCGCACCCTCTTTTATTT
TCGGGCTTGAGGGACTCTTTTTTGAATGTACTGCCGCCAGCCATGAGCAC
CAAGAAGGAGGCCTGGTTCCTTTCGACTGTGGGCTTGTTGGCGGGGGCGA
CGGGTCTGTCGTTGCTGTGTAAAGACGTAGGGATGATCGTTAGTCTGGTG
GGGTCGTCTCTGGGGGCTTTGATTGTGTACGTGTTCCCCCCCTTGATGTT
CCTGCATTTGTTGCGGAAGAATAAGGGAGAGATCAAGACAAGCGGCGCAG
AGATCTTGTTGTTGCATGCCACAATCGTGTTCGGGATTGTGAGTGGGTGT
TACGGGACGTGGGTCACCTTGTCGGGGGGTGGGGGGTAAATGAGCGTCAA
AAGGAAACTAGGAATAGGGCAAGCTTGGTAGAGGAAATGAAGGTTGTATG
AAGATGAATGGATATGGGCTGTCTGACTTTTCCTCGTGAAAAGTGAGGCA
GCTGGAAAATGGAAAAATCAACACGAGAATAATTTTTGGTATGAGGTGTC
ACAATTATTGTGCGTTCGTCCAGATTTTTTTTAAATTATGAACTGTAACA
AAAATGTGCTTGATACAACCTGCACTTCGATATCACGTGTTGTGCGTTTC
CTGTGGACACTCTCCTCACCTGAGGGTGCTCGAATTCCGTCTCGAACCGA
CCCGGAAGGGGAGCCACCAATCAACCATGGCGGGCTTTTCTTGCATGTTT
TGGGATGTTCTCTGACTATGTGTGGGCACGAGCGCTACCATGCGCCTAGT
TTATAGAGAAATGAAAACGCCATTTTCTACCTGATTAGCTGCTCGCTGCT
TGTGACTGTCCATGGCGGCAGCACTTCCCTCTCCCCTATACCTTGGTTCT
GGCTAGCCGGGTCACTCACACCATGCATGCCCGTTTTTAACACCCACCAT
GACCACAGGTAGCTCAGCTGCATCAAGCACAACCTCTCTTTCCTCCTATA
TCACCCGTCTGTGTGTACCTCCAAGGTTT

Coding sequence (CDS) from alignment at scaffold_25:41993..44171+

>mRNA_8051 ID=mRNA_8051|Name=jgi.p|Nanoce1779_2|602330|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_25:41993..44171+ (Nannochloropsis oceanica)
ATGGCCGCGCTTCCCGTCCGCATGGCGGTCTTCGTCCTGGCTGTTCTTTC
GTTCGTCTTCTTCCTGGCGCCGGCGGCTTCTTCCCCTGCTGTTTCAAGCG
CCATCAACAGCAACAAGGACGTCGTCCAGCTCTTTCATAAGAGGCATATT
CGAAGCTCTCACCATTTTCATTCTCTGCCTCGCATCCCATCACGTGCGCT
GCTGCTATCGCAAATCCGCGGCGGTGGCGGTGGCAACAGCAAGGCTACCG
CTACCATCGGAGCTCCCCCTGGGACGAGCACATTGATGGCCTCCATCGTC
AATTTGGCCAAAAATATCATAGGAGGGGGCATGCTTGCTTTGCCTGCCGG
CCTGGCCGCAGGGGCAGGGACGGGCTCCGCGTATACGTTCATTTTGGTGG
GGAGGTCGGTAGAGGCGACAAAGTCTCATTCCTTCAAGGAGGCATGGTCG
AGGACCGTCGGACCGAGCCACGCATGGATAGTGGACTACGCGATCACCGC
CTTGGCGTTTGGGGTGTGCATTGTGTATGCGTGCTTTGTGGGGGATACCT
TTACGTCTTTGTTGAAAGGGGCAGGCCTTCCTGAGTGGCTGTCGAGTCGA
GAAGCGAGCATCCTCGGTGTGACCTTGACTGTGTTGTTTCCTTTGACGTT
ATTGAGAGATTTGAGTGCCTTGCAGTACAGTTCGTATGTGGGTATCGGTG
CCGTTCTTTACACGGTTGTGTTTATTGCCTTGAGGTGGTATGATGGGAGT
TACGCCAAGGGAGGGAGGTTCTTCGCGGCTATCCCTTCTTATTTGCGTCC
TCGTCCCGCGGAATTTGGACAGTGGAAGATGTCGGCGGGTACATCTATTC
TGTTCAGCATGTTCTCGACCAGTTATATGGCACATACGAACGCGGTCAAA
TATTACAACGAGCTGGAGGGGAGGAGCGTCGGGAGATTCACACAGGTTGT
GGGGGTGGCGATGGGCGCGGCGACGGTGATTTATTTGAGCGCTATGGTCC
TGGGCTTTGAGACTTTCGGACTTGCAAGCCAGGGGCTGGTCTTGAACAAT
TATCATGTCTCGAAAGACATGCTTGCAACACTGGGGAGGGTGGCGACGGC
GGTATCGATCATTGGCGCGCACCCTCTTTTATTTTCGGGCTTGAGGGACT
CTTTTTTGAATGTACTGCCGCCAGCCATGAGCACCAAGAAGGAGGCCTGG
TTCCTTTCGACTGTGGGCTTGTTGGCGGGGGCGACGGGTCTGTCGTTGCT
GTGTAAAGACGTAGGGATGATCGTTAGTCTGGTGGGGTCGTCTCTGGGGG
CTTTGATTGTGTACGTGTTCCCCCCCTTGATGTTCCTGCATTTGTTGCGG
AAGAATAAGGGAGAGATCAAGACAAGCGGCGCAGAGATCTTGTTGTTGCA
TGCCACAATCGTGTTCGGGATTGTGAGTGGGTGTTACGGGACGTGGGTCA
CCTTGTCGGGGGGTGGGGGGTAAATGGCCGCGCTTCCCGTCCGCATGGCG
GTCTTCGTCCTGGCTGTTCTTTCGTTCGTCTTCTTCCTGGCGCCGGCGGC
TTCTTCCCCTGCTGTTTCAAGCGCCATCAACAGCAACAAGGACGTCGTCC
AGCTCTTTCATAAGAGGCATATTCGAAGCTCTCACCATTTTCATTCTCTG
CCTCGCATCCCATCACGTGCGCTGCTGCTATCGCAAATCCGCGGCGGTGG
CGGTGGCAACAGCAAGGCTACCGCTACCATCGGAGCTCCCCCTGGGACGA
GCACATTGATGGCCTCCATCGTCAATTTGGCCAAAAATATCATAGGAGGG
GGCATGCTTGCTTTGCCTGCCGGCCTGGCCGCAGGGGCAGGGACGGGCTC
CGCGTATACGTTCATTTTGGTGGGGAGGTCGGTAGAGGCGACAAAGTCTC
ATTCCTTCAAGGAGGCATGGTCGAGGACCGTCGGACCGAGCCACGCATGG
ATAGTGGACTACGCGATCACCGCCTTGGCGTTTGGGGTGTGCATTGTGTA
TGCGTGCTTTGTGGGGGATACCTTTACGTCTTTGTTGAAAGGGGCAGGCC
TTCCTGAGTGGCTGTCGAGTCGAGAAGCGAGCATCCTCGGTGTGACCTTG
ACTGTGTTGTTTCCTTTGACGTTATTGAGAGATTTGAGTGCCTTGCAGTA
CAGTTCGTATGTGGGTATCGGTGCCGTTCTTTACACGGTTGTGTTTATTG
CCTTGAGGTGGTATGATGGGAGTTACGCCAAGGGAGGGAGGTTCTTCGCG
GCTATCCCTTCTTATTTGCGTCCTCGTCCCGCGGAATTTGGACAGTGGAA
GATGTCGGCGGGTACATCTATTCTGTTCAGCATGTTCTCGACCAGTTATA
TGGCACATACGAACGCGGTCAAATATTACAACGAGCTGGAGGGGAGGAGC
GTCGGGAGATTCACACAGGTTGTGGGGGTGGCGATGGGCGCGGCGACGGT
GATTTATTTGAGCGCTATGGTCCTGGGCTTTGAGACTTTCGGACTTGCAA
GCCAGGGGCTGGTCTTGAACAATTATCATGTCTCGAAAGACATGCTTGCA
ACACTGGGGAGGGTGGCGACGGCGGTATCGATCATTGGCGCGCACCCTCT
TTTATTTTCGGGCTTGAGGGACTCTTTTTTGAATGTACTGCCGCCAGCCA
TGAGCACCAAGAAGGAGGCCTGGTTCCTTTCGACTGTGGGCTTGTTGGCG
GGGGCGACGGGTCTGTCGTTGCTGTGTAAAGACGTAGGGATGATCGTTAG
TCTGGTGGGGTCGTCTCTGGGGGCTTTGATTGTGTACGTGTTCCCCCCCT
TGATGTTCCTGCATTTGTTGCGGAAGAATAAGGGAGAGATCAAGACAAGC
GGCGCAGAGATCTTGTTGTTGCATGCCACAATCGTGTTCGGGATTGTGAG
TGGGTGTTACGGGACGTGGGTCACCTTGTCGGGGGGTGGGGGGTAA

Synonyms

Publications