jgi.p|Nanoce1779_2|602328, mRNA_8050 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602328
Unique NamemRNA_8050
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1210
Alignment locationscaffold_25:40644..41853 -

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Properties
Property NameValue
TranscriptId602414
TrackFilteredModels2
ProteinId602328
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:40644..41853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602328gene_8050Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602328mRNA_8050-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8050CDS_8050Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8050 ID=mRNA_8050|Name=jgi.p|Nanoce1779_2|602328|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
GTACGGTGGTGTTTATCGGCTTTGCCTCATGAATGCAGACACGAGGATCT
TGCCCAGCCCTCGACATCGTCGTTTATGTGATGTCTCGAGTTGTCTTCGA
TGATCACGAGTCCCGTTGACAGAACCTCCCCACCCCTACCATAATAACAC
ATACCACTACCACTACCACAGAGACAGCGAAGGAACCAACAAATAGGAGT
CATACGAGCTGGCTCGAGGCCAGGCCATCGCCCACCCCGTCACTCATCGT
CGGGCGTGCGACTTCGCCCTGAAGAGTTATTTCTTTCATCCAAAGGCCAT
CCTCCCTCGCTCAACTCAAGGCTAGACCACTACCCTCCCGGTTGCACCTT
TACTCAAACCCATGCACGTGACCTTGGGGGGTATTCACGAGGGAAATTTG
GCTGAGCTTCGGCTTCTGAACGATACCACTTTCCCCGTCCGCTATAACGA
TAAATTTTATCGCGAGGTTTTAACGACCCTTCCGGAATTTACGAGGTATG
CTTACGTGCATAACAAGGTGGTGGGGGCAATTTGTTGTCGGGTGGAGGAA
GAAGAGGTAGAAGAAGAGAGAGGTGATGACAAAAGGGAAGAGCAGCAACA
GTTGTCATTGCCTGCGTTGCTGCTGCAGCAGCAGCAGCGGGAGGAGGGAG
GACTCACGAGGACCCCACTAACAGAAGTAGCACATGGCTCCATGATTCGA
GCTCCTAGAAGAACCAAGCGAAGAAGGAGGCTGTATATAATGACGTTGGG
GGTTCAAGCTGCATATCGCGGTCAAGGGATTGGCTCCCGCTTACTGACCT
CTGTGCTGGACGCCGCAACACGACCACCACAGTGCTCCAGCAATGATCCC
TGTGACCTCGATATTGAAGAGATCTATCTGCACGTCCAAACGTCTAACGC
GGACGCCATCAATTTCTACTCGAAATTCGGCTTTGTCACCCGGGAGATAA
TCAAAAATTATTACAAGAGAATCGAGCCGCCTGATTGTTACATTCTATCA
AGAACGCTTGGAAGAGGAAAGAATGCGAGGGACAGGAAGAGGGAAACATC
AACAGCAGCATCGTCTACTCTGGCGGAGCTAGCAACATCAGCAACAGCAG
CAGTAGGGGACGCAGAAATCAGAGGCATGACACATTTGGTGTGTTCTGTT
CAACAAAAAGGCAGTAAAGATAAAATTGCTTAAAGAAACACAAAGCCAAG
AGCCGCATCT
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protein sequence of jgi.p|Nanoce1779_2|602328

>mRNA_8050-protein ID=mRNA_8050-protein|Name=jgi.p|Nanoce1779_2|602328|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MHVTLGGIHEGNLAELRLLNDTTFPVRYNDKFYREVLTTLPEFTRYAYVH
NKVVGAICCRVEEEEVEEERGDDKREEQQQLSLPALLLQQQQREEGGLTR
TPLTEVAHGSMIRAPRRTKRRRRLYIMTLGVQAAYRGQGIGSRLLTSVLD
AATRPPQCSSNDPCDLDIEEIYLHVQTSNADAINFYSKFGFVTREIIKNY
YKRIEPPDCYILSRTLGRGKNARDRKRETSTAASSTLAELATSATAAVGD
AEIRGMTHLVCSVQQKGSKDKIA*
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mRNA from alignment at scaffold_25:40644..41853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8050 ID=mRNA_8050|Name=jgi.p|Nanoce1779_2|602328|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp|location=Sequence derived from alignment at scaffold_25:40644..41853- (Nannochloropsis oceanica)
GTACGGTGGTGTTTATCGGCTTTGCCTCATGAATGCAGACACGAGGATCT
TGCCCAGCCCTCGACATCGTCGTTTATGTGATGTCTCGAGTTGTCTTCGA
TGATCACGAGTCCCGTTGACAGAACCTCCCCACCCCTACCATAATAACAC
ATACCACTACCACTACCACAGAGACAGCGAAGGAACCAACAAATAGGAGT
CATACGAGCTGGCTCGAGGCCAGGCCATCGCCCACCCCGTCACTCATCGT
CGGGCGTGCGACTTCGCCCTGAAGAGTTATTTCTTTCATCCAAAGGCCAT
CCTCCCTCGCTCAACTCAAGGCTAGACCACTACCCTCCCGGTTGCACCTT
TACTCAAACCCATGCACGTGACCTTGGGGGGTATTCACGAGGGAAATTTG
GCTGAGCTTCGGCTTCTGAACGATACCACTTTCCCCGTCCGCTATAACGA
TAAATTTTATCGCGAGGTTTTAACGACCCTTCCGGAATTTACGAGGTATG
CTTACGTGCATAACAAGGTGGTGGGGGCAATTTGTTGTCGGGTGGAGGAA
GAAGAGGTAGAAGAAGAGAGAGGTGATGACAAAAGGGAAGAGCAGCAACA
GTTGTCATTGCCTGCGTTGCTGCTGCAGCAGCAGCAGCGGGAGGAGGGAG
GACTCACGAGGACCCCACTAACAGAAGTAGCACATGGCTCCATGATTCGA
GCTCCTAGAAGAACCAAGCGAAGAAGGAGGCTGTATATAATGACGTTGGG
GGTTCAAGCTGCATATCGCGGTCAAGGGATTGGCTCCCGCTTACTGACCT
CTGTGCTGGACGCCGCAACACGACCACCACAGTGCTCCAGCAATGATCCC
TGTGACCTCGATATTGAAGAGATCTATCTGCACGTCCAAACGTCTAACGC
GGACGCCATCAATTTCTACTCGAAATTCGGCTTTGTCACCCGGGAGATAA
TCAAAAATTATTACAAGAGAATCGAGCCGCCTGATTGTTACATTCTATCA
AGAACGCTTGGAAGAGGAAAGAATGCGAGGGACAGGAAGAGGGAAACATC
AACAGCAGCATCGTCTACTCTGGCGGAGCTAGCAACATCAGCAACAGCAG
CAGTAGGGGACGCAGAAATCAGAGGCATGACACATTTGGTGTGTTCTGTT
CAACAAAAAGGCAGTAAAGATAAAATTGCTTAAAGAAACACAAAGCCAAG
AGCCGCATCT
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Coding sequence (CDS) from alignment at scaffold_25:40644..41853-

>mRNA_8050 ID=mRNA_8050|Name=jgi.p|Nanoce1779_2|602328|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_25:40644..41853- (Nannochloropsis oceanica)
ATGCACGTGACCTTGGGGGGTATTCACGAGGGAAATTTGGCTGAGCTTCG
GCTTCTGAACGATACCACTTTCCCCGTCCGCTATAACGATAAATTTTATC
GCGAGGTTTTAACGACCCTTCCGGAATTTACGAGGTATGCTTACGTGCAT
AACAAGGTGGTGGGGGCAATTTGTTGTCGGGTGGAGGAAGAAGAGGTAGA
AGAAGAGAGAGGTGATGACAAAAGGGAAGAGCAGCAACAGTTGTCATTGC
CTGCGTTGCTGCTGCAGCAGCAGCAGCGGGAGGAGGGAGGACTCACGAGG
ACCCCACTAACAGAAGTAGCACATGGCTCCATGATTCGAGCTCCTAGAAG
AACCAAGCGAAGAAGGAGGCTGTATATAATGACGTTGGGGGTTCAAGCTG
CATATCGCGGTCAAGGGATTGGCTCCCGCTTACTGACCTCTGTGCTGGAC
GCCGCAACACGACCACCACAGTGCTCCAGCAATGATCCCTGTGACCTCGA
TATTGAAGAGATCTATCTGCACGTCCAAACGTCTAACGCGGACGCCATCA
ATTTCTACTCGAAATTCGGCTTTGTCACCCGGGAGATAATCAAAAATTAT
TACAAGAGAATCGAGCCGCCTGATTGTTACATTCTATCAAGAACGCTTGG
AAGAGGAAAGAATGCGAGGGACAGGAAGAGGGAAACATCAACAGCAGCAT
CGTCTACTCTGGCGGAGCTAGCAACATCAGCAACAGCAGCAGTAGGGGAC
GCAGAAATCAGAGGCATGACACATTTGGTGTGTTCTGTTCAACAAAAAGG
CAGTAAAGATAAAATTGCTTAA
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Synonyms
Publications