jgi.p|Nanoce1779_2|574203, mRNA_805 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574203
Unique NamemRNA_805
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length391
Alignment locationscaffold_2:472612..473392 +

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Properties
Property NameValue
TranscriptId574289
TrackFilteredModels2
ProteinId574203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:472612..473392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574203gene_805Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574203mRNA_805-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_805CDS_805Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_805 ID=mRNA_805|Name=jgi.p|Nanoce1779_2|574203|organism=Nannochloropsis oceanica|type=mRNA|length=391bp
CAGGCAACCATGACGATGGGGGCGGGCCTTTTCGGGGCCTCCTTGGGCAT
CTTCGTCAAGATGGCCAGCAACAGCATGCGCAAGATACCACTTCGACGAG
AGCCGTGGGACTACCCCTTGTTCATGATAGTGGGCACATGGGTGGGGTAC
AAGTACGTCTCGCTGGAAGCGAGTCTGACGGAGCGGGTGAACGAGAAGCG
GGCCGCATTGGAGAAGCCTCCTGTGGAACTGGGTGGGATTATGACGACGC
TCAAGAAGGCGGCGGAGTAAGAGAACAGGAGGAAGGAGAGGGCGTTTGTC
TTAATGTCAACGGCCATGGGTGGTCTGTCTGTTTATGTAGCTGATGAGAG
AGTTGAGATAGAAAGAAGAAGAGAAGGAGCGACGGAATGAA
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protein sequence of jgi.p|Nanoce1779_2|574203

>mRNA_805-protein ID=mRNA_805-protein|Name=jgi.p|Nanoce1779_2|574203|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MTMGAGLFGASLGIFVKMASNSMRKIPLRREPWDYPLFMIVGTWVGYKYV
SLEASLTERVNEKRAALEKPPVELGGIMTTLKKAAE*
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mRNA from alignment at scaffold_2:472612..473392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_805 ID=mRNA_805|Name=jgi.p|Nanoce1779_2|574203|organism=Nannochloropsis oceanica|type=mRNA|length=781bp|location=Sequence derived from alignment at scaffold_2:472612..473392+ (Nannochloropsis oceanica)
CAGGCAACCATGACGATGGGGGCGGGCCTTTTCGGGGCCTCCTTGGGCAT
CTTCGTCAAGATGGCCAGCAACAGCATGCGCAAGATACCACTTCGACGAG
GTAAATAATTGGTAGTTGGTGGAGTGGGGGCGTGGGATCGGGTGGGAGAA
AGCTACAGGAGAGGAGCCAAGTCAGGCAGGAAAGCGAAGGACTTCTGGGT
ACGCCCTAGTAGCCGCACGCGTAGCCCTGCACCAGATTAAAGAACACCCC
CTTTGGTAGAAAAAGACGAGTAGCATGTGGGCTGCAAGCGGATTTCAGAG
CGAGAAAGGGTTGGTAGAAATGGTGGACATCCCTAGCCCACCTGCGGGTC
TCATGATGCGACTACATGCATGCCCTCACCTTCAAGAAACATAGCATTGC
GTGATTGCCAACACCCAAGAATCCAGATGACTCACCAAAATATATTCTGC
TCCTCAACTCCTTTCCCTCCCCTTCTTTCGAACAAAACAGAGCCGTGGGA
CTACCCCTTGTTCATGATAGTGGGCACATGGGTGGGGTACAAGTACGTCT
CGCTGGAAGCGAGTCTGACGGAGCGGGTGAACGAGAAGCGGGCCGCATTG
GAGAAGCCTCCTGTGGAACTGGGTGGGATTATGACGACGCTCAAGAAGGC
GGCGGAGTAAGAGAACAGGAGGAAGGAGAGGGCGTTTGTCTTAATGTCAA
CGGCCATGGGTGGTCTGTCTGTTTATGTAGCTGATGAGAGAGTTGAGATA
GAAAGAAGAAGAGAAGGAGCGACGGAATGAA
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Coding sequence (CDS) from alignment at scaffold_2:472612..473392+

>mRNA_805 ID=mRNA_805|Name=jgi.p|Nanoce1779_2|574203|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_2:472612..473392+ (Nannochloropsis oceanica)
ATGACGATGGGGGCGGGCCTTTTCGGGGCCTCCTTGGGCATCTTCGTCAA
GATGGCCAGCAACAGCATGCGCAAGATACCACTTCGACGAGAGCCGTGGG
ACTACCCCTTGTTCATGATAGTGGGCACATGGGTGGGGTACAAGTACGTC
TCGCTGGAAGCGAGTCTGACGGAGCGGGTGAACGAGAAGCGGGCCGCATT
GGAGAAGCCTCCTGTGGAACTGGGTGGGATTATGACGACGCTCAAGAAGG
CGGCGGAGTAAATGACGATGGGGGCGGGCCTTTTCGGGGCCTCCTTGGGC
ATCTTCGTCAAGATGGCCAGCAACAGCATGCGCAAGATACCACTTCGACG
AGAGCCGTGGGACTACCCCTTGTTCATGATAGTGGGCACATGGGTGGGGT
ACAAGTACGTCTCGCTGGAAGCGAGTCTGACGGAGCGGGTGAACGAGAAG
CGGGCCGCATTGGAGAAGCCTCCTGTGGAACTGGGTGGGATTATGACGAC
GCTCAAGAAGGCGGCGGAGTAA
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Synonyms
Publications