jgi.p|Nanoce1779_2|673373, mRNA_8049 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673373
Unique Name	mRNA_8049
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1515
Alignment location	scaffold_25:38808..40512 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673459
Track	FilteredModels2
ProteinId	673373

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:38808..40512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673373	gene_8049	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673373	mRNA_8049-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8049	CDS_8049	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:38808..40512+
coding sequence from alignment at scaffold_25:38808..40512+

mRNA sequence

>mRNA_8049 ID=mRNA_8049|Name=jgi.p|Nanoce1779_2|673373|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
AGGATCGTAGCTGTGGCTGTTGCTATTATTTTTGCTATCGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGTGAAGGCTAACGCCGGAC
GGAGCGATGAAGAGCGTGCTCTTGGGAGTTGCGCTGCCGCGCCTCAGCCA
GGATGATACAGAGCGCCTTAACATTCTAGCGCTCCTTATAGATGGAAGGA
GAAAGGCGGGCGTCATGGTTGGTAGCAGTATCAAGAGTAGCAGGAGCAGT
ATGGAGGATAGACCAAGAGGCAGCAAGTAACAGTAGCCGCGATGTAGTCG
GGGCCGGGATAAAATGGAGGCCGAGGACGATGATGATGCTGAATTCTGGC
GTCCACACCACACCAGCATATATGCGAGGCAAAACTTCCCCTCTTCCTGC
TTTTGGCAGATTGTAGGTGGGAAGGAGGCGTGAGGTTCGTGTCTCGTCCT
GATTCGTTGACGACTTACGGAAATGTCGGCGTCGAAGCATTCCTCTGCAT
TTGAACTTGTCACTTCGCTTGCGTCCCACTTCCTCGTGCACAGCCACACA
CAGGTTTATGTCCAGGACGACCTACAATGGGGCTGCTGCGAACGTAGGGC
GCTTGGCGCACCACTTGACACCCCACGCTAGTTTTAACCTCCCGCCCCTA
GTCCAACCCCGCCCCTTCATCATTCCAGAAAGCCGTGGCAATACTGACTC
ACCCGTGCCCCTTTACACCTTTACGATGCCACACAGAAATGAAAACTATG
TCGTTCCTAGCCTCAGCCACAGTCATGGGCGTTTCCATGGGCGGCGTGCG
GGCTTTTCAGTCCCCAATGCTCAAGTCTCTGACGCAGCTTGTGGGGGGTG
GGGGAATCAGCCCCTCCCGGCCCTCTGGCCCGGTCTGTACCTCGCGGGAC
GGTGTGAAGCGGCACTTGTGGAACAGCATTTTTGGTGCCGCGGGGAAGAA
TGAGATTGACTATTCGACGATGAAAGGGATGGCTGCCAAGGAGGCGGCCG
AGTATGCGTTGGCTGGTCAGGTGAAGGATAAGAGCAAGGACGGGCATGAA
TTCGCAACATTTGCCGGAGGGTGCTTCTGGGGATTGGAGCTGGCTTACCA
GCGTGTGCCGGGTGTCATTGATACATCGGTGGGATACACGCAGGGTAAGG
AGGATAAGCCGACGTATGATTATGTTTGTAGTGGTATGAGCGGGCACACG
GAAGCGGTGCAGGTGATTTTCAACCCCAAGGAGGTGACATACGAATACTT
GTGCAAGCTGCTCTTGTCTCGCATCAACCCCACATTAAAGAACCAAGTAG
GGAATGACCGAGCACAAGGCGCCATCGCCAAGAAGGTTCTTGAAGAGGCT
CAAGTTCAATTTGGAAGTAAGCCAATCGTGACAGAGTGCAAGCCGGCGGT
CGTATACTGGCCTGCGGAGGAGTATCACCAGAAGTATCTCGAGAAGGGAG
GAAGGTTTGGGGGGGGACAGAGTGCGGCGAAGGGCTGCACAGACCCCATC
CGTTGTTATGGGTAG

protein sequence of jgi.p|Nanoce1779_2|673373

>mRNA_8049-protein ID=mRNA_8049-protein|Name=jgi.p|Nanoce1779_2|673373|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MKTMSFLASATVMGVSMGGVRAFQSPMLKSLTQLVGGGGISPSRPSGPVC
TSRDGVKRHLWNSIFGAAGKNEIDYSTMKGMAAKEAAEYALAGQVKDKSK
DGHEFATFAGGCFWGLELAYQRVPGVIDTSVGYTQGKEDKPTYDYVCSGM
SGHTEAVQVIFNPKEVTYEYLCKLLLSRINPTLKNQVGNDRAQGAIAKKV
LEEAQVQFGSKPIVTECKPAVVYWPAEEYHQKYLEKGGRFGGGQSAAKGC
TDPIRCYG*

mRNA from alignment at scaffold_25:38808..40512+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8049 ID=mRNA_8049|Name=jgi.p|Nanoce1779_2|673373|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp|location=Sequence derived from alignment at scaffold_25:38808..40512+ (Nannochloropsis oceanica)
AGGATCGTAGCTGTGGCTGTTGCTATTATTTTTGCTATCGCTGCCGCCGC
CGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTT
CTGTGAAGGCTAACGCCGGACGGAGCGATGAAGAGCGTGCTCTTGGGAGT
TGCGCTGCCGCGCCTCAGCCAGGATGATACAGAGCGCCTTAACATTCTAG
CGCTCCTTATAGATGGAAGGAGAAAGGCGGGCGTCATGGTTGGTAGCAGT
ATCAAGAGTAGCAGGAGCAGTATGGAGGATAGACCAAGAGGCAGCAAGTA
ACAGTAGCCGCGATGTAGTCGGGGCCGGGATAAAATGGAGGCCGAGGACG
ATGATGATGCTGAATTCTGGCGTCCACACCACACCAGCATATATGCGAGG
CAAAACTTCCCCTCTTCCTGCTTTTGGCAGATTGTAGGTGGGAAGGAGGC
GTGAGGTTCGTGTCTCGTCCTGATTCGTTGACGACTTACGGAAATGTCGG
CGTCGAAGCATTCCTCTGCATTTGAACTTGTCACTTCGCTTGCGTCCCAC
TTCCTCGTGCACAGCCACACACAGGTTTATGTCCAGGACGACCTACAATG
GGGCTGCTGCGAACGTAGGGCGCTTGGCGCACCACTTGACACCCCACGCT
AGTTTTAACCTCCCGCCCCTAGTCCAACCCCGCCCCTTCATCATTCCAGA
AAGCCGTGGCAATACTGACTCACCCGTGCCCCTTTACACCTTTACGATGC
CACACAGAAATGAAAACTATGTCGTTCCTAGCCTCAGCCACAGTCATGGG
CGTTTCCATGGGCGGCGTGCGGGCTTTTCAGTCCCCAATGCTCAAGTCTC
TGACGCAGCTTGTGGGGGGTGGGGGAATCAGCCCCTCCCGGCCCTCTGGC
CCGGTCTGTACCTCGCGGGACGGTGTGAAGCGGCACTTGTGGAACAGCAT
TTTTGGTGCCGCGGGGAAGAATGAGATTGACTATTCGACGATGAAAGGGA
TGGCTGCCAAGGAGGCGGCCGAGTATGCGTTGGCTGGTCAGGTGAAGGAT
AAGAGCAAGGACGGGCATGAATTCGCAACATTTGCCGGAGGGTGCTTCTG
GGGATTGGAGCTGGCTTACCAGCGTGTGCCGGGTGTCATTGATACATCGG
TGGGATACACGCAGGGTAAGGAGGATAAGCCGACGTATGATTATGTTTGT
AGTGGTATGAGCGGGCACACGGAAGCGGTGCAGGTGATTTTCAACCCCAA
GGAGGTGACATACGAATACTTGTGCAAGCTGCTCTTGTCTCGCATCAACC
CCACATTAAAGAACCAAGTAGGGAATGACCGAGGTACGTCGTATCATTCG
TGAAGGTGGTGGATAAGAAGAAGCGAAGGAGGGCTGATGCGCAGTATGTC
TGGCACTCTCTTACCCATCCTCCCTCCTTCCTTCCTCCCCTCCCTCCCTC
CTCTCCTCCAAGGCACACAATATCGCCATGGCATCTACTACCACAAACGA
AGCACAAGGCGCCATCGCCAAGAAGGTTCTTGAAGAGGCTCAAGTTCAAT
TTGGAAGTAAGCCAATCGTGACAGAGTGCAAGCCGGCGGTCGTATACTGG
CCTGCGGAGGAGTATCACCAGAAGTATCTCGAGAAGGGAGGAAGGTTTGG
GGGGGGACAGAGTGCGGCGAAGGGCTGCACAGACCCCATCCGTTGTTATG
GGTAG

Coding sequence (CDS) from alignment at scaffold_25:38808..40512+

>mRNA_8049 ID=mRNA_8049|Name=jgi.p|Nanoce1779_2|673373|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_25:38808..40512+ (Nannochloropsis oceanica)
ATGAAAACTATGTCGTTCCTAGCCTCAGCCACAGTCATGGGCGTTTCCAT
GGGCGGCGTGCGGGCTTTTCAGTCCCCAATGCTCAAGTCTCTGACGCAGC
TTGTGGGGGGTGGGGGAATCAGCCCCTCCCGGCCCTCTGGCCCGGTCTGT
ACCTCGCGGGACGGTGTGAAGCGGCACTTGTGGAACAGCATTTTTGGTGC
CGCGGGGAAGAATGAGATTGACTATTCGACGATGAAAGGGATGGCTGCCA
AGGAGGCGGCCGAGTATGCGTTGGCTGGTCAGGTGAAGGATAAGAGCAAG
GACGGGCATGAATTCGCAACATTTGCCGGAGGGTGCTTCTGGGGATTGGA
GCTGGCTTACCAGCGTGTGCCGGGTGTCATTGATACATCGGTGGGATACA
CGCAGGGTAAGGAGGATAAGCCGACGTATGATTATGTTTGTAGTGGTATG
AGCGGGCACACGGAAGCGGTGCAGGTGATTTTCAACCCCAAGGAGGTGAC
ATACGAATACTTGTGCAAGCTGCTCTTGTCTCGCATCAACCCCACATTAA
AGAACCAAGTAGGGAATGACCGAGCACAAGGCGCCATCGCCAAGAAGGTT
CTTGAAGAGGCTCAAGTTCAATTTGGAAGTAAGCCAATCGTGACAGAGTG
CAAGCCGGCGGTCGTATACTGGCCTGCGGAGGAGTATCACCAGAAGTATC
TCGAGAAGGGAGGAAGGTTTGGGGGGGGACAGAGTGCGGCGAAGGGCTGC
ACAGACCCCATCCGTTGTTATGGGTAGATGAAAACTATGTCGTTCCTAGC
CTCAGCCACAGTCATGGGCGTTTCCATGGGCGGCGTGCGGGCTTTTCAGT
CCCCAATGCTCAAGTCTCTGACGCAGCTTGTGGGGGGTGGGGGAATCAGC
CCCTCCCGGCCCTCTGGCCCGGTCTGTACCTCGCGGGACGGTGTGAAGCG
GCACTTGTGGAACAGCATTTTTGGTGCCGCGGGGAAGAATGAGATTGACT
ATTCGACGATGAAAGGGATGGCTGCCAAGGAGGCGGCCGAGTATGCGTTG
GCTGGTCAGGTGAAGGATAAGAGCAAGGACGGGCATGAATTCGCAACATT
TGCCGGAGGGTGCTTCTGGGGATTGGAGCTGGCTTACCAGCGTGTGCCGG
GTGTCATTGATACATCGGTGGGATACACGCAGGGTAAGGAGGATAAGCCG
ACGTATGATTATGTTTGTAGTGGTATGAGCGGGCACACGGAAGCGGTGCA
GGTGATTTTCAACCCCAAGGAGGTGACATACGAATACTTGTGCAAGCTGC
TCTTGTCTCGCATCAACCCCACATTAAAGAACCAAGTAGGGAATGACCGA
GCACAAGGCGCCATCGCCAAGAAGGTTCTTGAAGAGGCTCAAGTTCAATT
TGGAAGTAAGCCAATCGTGACAGAGTGCAAGCCGGCGGTCGTATACTGGC
CTGCGGAGGAGTATCACCAGAAGTATCTCGAGAAGGGAGGAAGGTTTGGG
GGGGGACAGAGTGCGGCGAAGGGCTGCACAGACCCCATCCGTTGTTATGG
GTAG

Synonyms

Publications