jgi.p|Nanoce1779_2|602306, mRNA_8046 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602306
Unique NamemRNA_8046
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length600
Alignment locationscaffold_25:29692..30681 -

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Properties
Property NameValue
TranscriptId602392
TrackFilteredModels2
ProteinId602306
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:29692..30681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602306gene_8046Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602306mRNA_8046-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8046CDS_8046Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8046 ID=mRNA_8046|Name=jgi.p|Nanoce1779_2|602306|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
ACAGGACCCACGTAAGTCCCGACCCCCTTCACGCGAATAACGGAGAGAAT
GGCCGGCCGCGGCAGCAACCTTTCGACCTCTCAACAAGCCATCTCGGCCG
CCCCCCCCCAAAAGAAAGAAAAGGGTCTGCAAAATGACTTGGTGAAGATG
GTGTACGGGTACGGAGACGAAAAACAGCCCATGCAGGAGTCAATCGACCT
GTTGGACAGTCTGGTGAAGGAGTACTTGGAGGAAATGTGCCTGCAGGCCT
ACGAAGTTGCCTTACTCTCCCAACGCGACGTCCAGACCAGCGATTTTATT
TTCTTGATCCGCAAGGACGTTCGGCGCTACAAACGAATGAAAGATTTACT
CGAAGCAGACGAGGAGCTGCGTGATGCCCGTGACCCGAAAGTGAAGAAAC
TAACCGAGGCTTAGGGGAGGAAGAGATAAATGGATGGAGGGAGGACTAAA
TCAGCAGATGCATGTATATAGGGTAGCCGAGGCGACCAGGTCAACATAAA
TTGGACAAGCGTAGATCCGCCGCAACATCAATTTTAAATCACCTCTTGGC
TTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
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protein sequence of jgi.p|Nanoce1779_2|602306

>mRNA_8046-protein ID=mRNA_8046-protein|Name=jgi.p|Nanoce1779_2|602306|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MAGRGSNLSTSQQAISAAPPQKKEKGLQNDLVKMVYGYGDEKQPMQESID
LLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDL
LEADEELRDARDPKVKKLTEA*
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mRNA from alignment at scaffold_25:29692..30681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8046 ID=mRNA_8046|Name=jgi.p|Nanoce1779_2|602306|organism=Nannochloropsis oceanica|type=mRNA|length=990bp|location=Sequence derived from alignment at scaffold_25:29692..30681- (Nannochloropsis oceanica)
ACAGGACCCACGTAAGTCCCGACCCCCTTCACGCGAATAACGGAGAGAAT
GGCCGGCCGCGGCAGCAACCTTTCGACCTCTCAACAAGCCATCTCGGCCG
CCCCCCCCCAAAAGAAAGAAAAGGGTCTGCAAAATGACTTGGTGAAGATG
GTGTACGGGTACGGAGACGAAAAACAGCCCATGCAGGAGTCAATCGACCT
GTTGGACAGTCTGGTGAAGGAGTACTTGGAGGAAATGTGCCTGCAGGTGA
ATTACATGGGATGCGAGGGGGGAGAAGAGGGTTGCGATATGTATGAAGCC
GTTCCGGTTTGGCCTGTGGACGACAGGCATACTTGTCTGCCGGCATATTT
TGTATCTATGTGATGGCTGACTGATGGGGCTGTGGTCGCAATTCCTCATG
GAAGTCTGGTAATGGGGTAATGGCAAAGCAGATCGGTAGTGATGATGCTT
GATCTATCTGCGCACGTCTCTTCCATCTGGGAATGACTGAATTGTTTTTT
TTGCGCTCGGATCTTTCAAGGTTCTCGCTCACTCGGTATGATGTTGTAAA
AAGACAATTTTCCCCCACATACACAACCAACCTATCAGCCTCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCCTTCGCACAGGCCTACGAAGTTGC
CTTACTCTCCCAACGCGACGTCCAGACCAGCGATTTTATTTTCTTGATCC
GCAAGGACGTTCGGCGCTACAAACGAATGAAAGATTTACTCGAAGCAGAC
GAGGAGCTGCGTGATGCCCGTGACCCGAAAGTGAAGAAACTAACCGAGGC
TTAGGGGAGGAAGAGATAAATGGATGGAGGGAGGACTAAATCAGCAGATG
CATGTATATAGGGTAGCCGAGGCGACCAGGTCAACATAAATTGGACAAGC
GTAGATCCGCCGCAACATCAATTTTAAATCACCTCTTGGCTTTTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
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Coding sequence (CDS) from alignment at scaffold_25:29692..30681-

>mRNA_8046 ID=mRNA_8046|Name=jgi.p|Nanoce1779_2|602306|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_25:29692..30681- (Nannochloropsis oceanica)
GCCTACGAAGTTGCCTTACTCTCCCAACGCGACGTCCAGACCAGCGATTT
TATTTTCTTGATCCGCAAGGACGTTCGGCGCTACAAACGAATGAAAGATT
TACTCGAAGCAGACGAGGAGCTGCGTGATGCCCGTGACCCGAAAGTGAAG
AAACTAACCGAGGCTTAGATGGCCGGCCGCGGCAGCAACCTTTCGACCTC
TCAACAAGCCATCTCGGCCGCCCCCCCCCAAAAGAAAGAAAAGGGTCTGC
AAAATGACTTGGTGAAGATGGTGTACGGGTACGGAGACGAAAAACAGCCC
ATGCAGGAGTCAATCGACCTGTTGGACAGTCTGGTGAAGGAGTACTTGGA
GGAAATGTGCCTGCAGGCCTACGAAGTTGCCTTACTCTCCCAACGCGACG
TCCAGACCAGCGATTTTATTTTCTTGATCCGCAAGGACGTTCGGCGCTAC
AAACGAATGAAAGATTTACTCGAAGCAGACGAGGAGCTGCGTGATGCCCG
TGACCCGAAAGTGAAGAAACTAACCGAGGCTTAGATGGCCGGCCGCGGCA
GCAACCTTTCGACCTCTCAACAAGCCATCTCGGCCGCCCCCCCCCAAAAG
AAAGAAAAGGGTCTGCAAAATGACTTGGTGAAGATGGTGTACGGGTACGG
AGACGAAAAACAGCCCATGCAGGAGTCAATCGACCTGTTGGACAGTCTGG
TGAAGGAGTACTTGGAGGAAATGTGCCTGCAG
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Synonyms
Publications