jgi.p|Nanoce1779_2|602276, mRNA_8039 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602276
Unique NamemRNA_8039
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1312
Alignment locationscaffold_25:14371..16456 -

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Properties
Property NameValue
TranscriptId602362
TrackFilteredModels2
ProteinId602276
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:14371..16456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602276gene_8039Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602276mRNA_8039-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8039CDS_8039Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8039 ID=mRNA_8039|Name=jgi.p|Nanoce1779_2|602276|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp
CTCAAATTTTGCCCGTGATGTTTTGTTTTTCCCTATTGTTGTTGTGAAGC
TTCAGGAGTGTGTGCGTGCGCCGAGCGAGGCGCGGTTGAAAGGAGGGAAA
AGCAAACCACAAAAGCCTTCCAAAAAAGGGACCAAAACAGTTGAATCTAA
GGACACGAATACCTCAGACACGGTATTATTGTATATATCTCTATTCTTGG
TGTGTTTGTGCCTTCGCTTTTCGAACGCGTCGTCAGGAGGCAGGCCATGG
ATGGGCCATGGACCTTCTCGCTAGTGGACATTGTGCCGCGGCCTGGCTGC
CATCCAGTCGACCCCCCCACCGTTCTCCCGCATTCTTCACGCCGCATGAC
TTGTTGATGACCAAACAACACACCACCTGACCCAAAGCCGACACACACTC
ACATATTCATCACAATTTCCTTGCTATATCACACCTACATTGGCCCTCTT
CGCTCTCCTCCACCAGTCATCATGGACTCTCAACAAGTCAAGCTCGTCAA
GGTCAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCAGG
TGCGGGTGGAGTTTTTGGACGACCCTACGCGTAGCATCCGGCGGAACGTG
AAAGGCCCCGTGCGGGAGGGGGATGTACTGTGCCTGTTGGAATGGGAGCG
TGATGCCCGCCGACTTCGATAAGCTGCGGCCGACGTTGCCGCCATCGCCG
CAGCAGCAGCAGGAGTCACACCAAAAGCAGCACCAGTAGCAGCAGCAGCA
GCAAGTGGGAGAGGAGCAGCAGCTGCCGAATAGCAACATTAAATGGGGAA
CTTTTGTGGAAGCAGGAGCAGCATTGTCTTTTCTTTCCTCACTATATTGT
CTTCTCTCATTGCAGCAATAGCAGCAGAAGGAACGGGTTGAGAGGGGAAA
AGGGGGGGCTTCGCGCTAGGTGAGAGAACGATAGAAGCAAAAGGACCTGG
GGAAAACTATCACTTGGCTTGACCTACGCTCTTTAAATATTCCACGGGAT
GGTGTACATTCCTCTTTCCTTGTTCGCTTTCTCTATTTCTCTATTTATCT
ACATATCTATCTACCTATCAATCTATCTACCTTTTTCTATCTTTCTACCC
CTCTCTATCCCTCCATCTATCTACCTACCTACCTCGCTCCATTTGGGGTG
AGGAGATGAGGAGACGGAAAAGCAAACGCACGTGCAAGACTTACTGGATG
AGTGGGTGGGCATGTAAAGCTATGTGAAAAAGAATAAGGTCAGAGACGCA
AAAAGGAACAGAAAGAGCGTGAAGACTTTTTCCCGCGCACAAAAACGAAT
CTAAATAAGGGG
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protein sequence of jgi.p|Nanoce1779_2|602276

>mRNA_8039-protein ID=mRNA_8039-protein|Name=jgi.p|Nanoce1779_2|602276|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREG
DVLCLLEWERDARRLR*
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mRNA from alignment at scaffold_25:14371..16456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8039 ID=mRNA_8039|Name=jgi.p|Nanoce1779_2|602276|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp|location=Sequence derived from alignment at scaffold_25:14371..16456- (Nannochloropsis oceanica)
CTCAAATTTTGCCCGTGATGTTTTGTTTTTCCCTATTGTTGTTGTGAAGC
TTCAGGAGTGTGTGCGTGCGCCGAGCGAGGCGCGGTTGAAAGGAGGGAAA
AGCAAACCACAAAAGCCTTCCAAAAAAGGGACCAAAACAGTTGAATCTAA
GGACACGAATACCTCAGACACGGTATTATTGTATATATCTCTATTCTTGG
TGTGTTTGTGCCTTCGCTTTTCGAACGCGTCGTCAGGAGGCAGGCCATGG
ATGGGCCATGGACCTTCTCGCTAGTGGACATTGTGCCGCGGCCTGGCTGC
CATCCAGTCGACCCCCCCACCGTTCTCCCGCATTCTTCACGCCGCATGAC
TTGTTGATGACCAAACAACACACCACCTGACCCAAAGCCGACACACACTC
ACATATTCATCACAATTTCCTTGCTATATCACACCTACATTGGCCCTCTT
CGCTCTCCTCCACCAGTCATCATGGTACGTTATGCCTCCTCATGTCCTTG
CCCCACCCTCCTTCCCTCCCTTCCTCCCCCTCGTTCCCTTGGTCCCGTTT
TGTAACACCTCCTCCTTTCACCTCTTCAACAGGACTCTCAACAAGTCAAG
CTCGTCAAGGTCAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGT
GACCCAGGTGAGTAGGCGTGCATCGTGCGCCGAGGAGAAGCGAGTGAGGG
AGGGAGGGGATGATTCTACTGCTGGAAGAAATCCGTGGAGAGCATGATGC
TGCCTGCAACACAGAGGCCTCCTCGACTTCATGAAATGATGTGTGGCGGT
CGTTGGCCCGCGAGTGGGTGGGCGAGACTAGGGCAGGAGCTGCGTGCGCT
TAGAGGGCCTAATCATCCTGCATCCTGCTGGGTTCTACGCAAACCACCGA
CCAACCCGACAAGTCTTCCATCCAGTTTTCCTCTATCTTGACACTAGTCG
TCCTATCAGTACTACCGAGCCTGTTGTCTGTGCCCTTAATACAGCAACAC
GATGCTTGCCGTCATACTAAACCCTCCATGCGTCATGCTAACCCTGTCCC
TCCCTATTTTCCTCTCTCCCTCCTTCCCTTCATTCTCTCGGAACCTAGGT
GCGGGTGGAGTTTTTGGACGACCCTACGCGTAGCATCCGGCGGAACGTGA
AAGGCCCCGTGCGGGAGGTACGTCTGCGTTTCAGGGAGGAGGAAAAGCTA
GACTGAGGGAAGGAGGGAGAGGCGGGCGAGGTTATTTTGCGTATGGGTGG
GATTCTGTGCTGGCTTGTGTACGGACCAGTGCAACTGCGTGTCTGCAAGG
CTGATTTTATTGATACACGACTTCCTTGAGTGGGAAAACACTCTCACCCT
TCCTTCTTCCTCCTTCCCTTCCTCTCTTTTTTTCCTGTGCAGGGGGATGT
ACTGTGCCTGTTGGAATGGGAGCGTGATGCCCGCCGACTTCGATAAGCTG
CGGCCGACGTTGCCGCCATCGCCGCAGCAGCAGCAGGAGTCACACCAAAA
GCAGCACCAGTAGCAGCAGCAGCAGCAAGTGGGAGAGGAGCAGCAGCTGC
CGAATAGCAACATTAAATGGGGAACTTTTGTGGAAGCAGGAGCAGCATTG
TCTTTTCTTTCCTCACTATATTGTCTTCTCTCATTGCAGCAATAGCAGCA
GAAGGAACGGGTTGAGAGGGGAAAAGGGGGGGCTTCGCGCTAGGTGAGAG
AACGATAGAAGCAAAAGGACCTGGGGAAAACTATCACTTGGCTTGACCTA
CGCTCTTTAAATATTCCACGGGATGGTGTACATTCCTCTTTCCTTGTTCG
CTTTCTCTATTTCTCTATTTATCTACATATCTATCTACCTATCAATCTAT
CTACCTTTTTCTATCTTTCTACCCCTCTCTATCCCTCCATCTATCTACCT
ACCTACCTCGCTCCATTTGGGGTGAGGAGATGAGGAGACGGAAAAGCAAA
CGCACGTGCAAGACTTACTGGATGAGTGGGTGGGCATGTAAAGCTATGTG
AAAAAGAATAAGGTCAGAGACGCAAAAAGGAACAGAAAGAGCGTGAAGAC
TTTTTCCCGCGCACAAAAACGAATCTAAATAAGGGG
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Coding sequence (CDS) from alignment at scaffold_25:14371..16456-

>mRNA_8039 ID=mRNA_8039|Name=jgi.p|Nanoce1779_2|602276|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_25:14371..16456- (Nannochloropsis oceanica)
GGGGATGTACTGTGCCTGTTGGAATGGGAGCGTGATGCCCGCCGACTTCG
ATAAGTGCGGGTGGAGTTTTTGGACGACCCTACGCGTAGCATCCGGCGGA
ACGTGAAAGGCCCCGTGCGGGAGGACTCTCAACAAGTCAAGCTCGTCAAG
GTCAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCAGAT
GGGGGATGTACTGTGCCTGTTGGAATGGGAGCGTGATGCCCGCCGACTTC
GATAAGTGCGGGTGGAGTTTTTGGACGACCCTACGCGTAGCATCCGGCGG
AACGTGAAAGGCCCCGTGCGGGAGGACTCTCAACAAGTCAAGCTCGTCAA
GGTCAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCAGA
TGGGGGATGTACTGTGCCTGTTGGAATGGGAGCGTGATGCCCGCCGACTT
CGATAAGTGCGGGTGGAGTTTTTGGACGACCCTACGCGTAGCATCCGGCG
GAACGTGAAAGGCCCCGTGCGGGAGGACTCTCAACAAGTCAAGCTCGTCA
AGGTCAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCAG
ATGGGGGATGTACTGTGCCTGTTGGAATGGGAGCGTGATGCCCGCCGACT
TCGATAAGTGCGGGTGGAGTTTTTGGACGACCCTACGCGTAGCATCCGGC
GGAACGTGAAAGGCCCCGTGCGGGAGGACTCTCAACAAGTCAAGCTCGTC
AAGGTCAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCA
GATG
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Synonyms
Publications