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Properties
| Property Name | Value |
|---|
| TranscriptId | 200386 |
| Track | FilteredModels2 |
| ProteinId | 200300 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:11975..13420 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8038 ID=mRNA_8038|Name=jgi.p|Nanoce1779_2|200300|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
CCTGTAGGGAAAGGGGAAATTCTGATGTATTTTAATGCCCCAAAATGCCG
ATCACGATTATATTTAATTCTCTTGTGTCTTGTAGGAAACAGGAAGACAA
AGAGATGAAAGGGGAGGAAAAATCACCGAGGACTCCTTGGAGAACGCAGC
TGAATTGAAATTTTCATCATTGCTTTGACCATTCACTTCTGTTGTGGGTA
TCACCCGATCAGTGCTTGTTTCCTCCTACATAGAGTGGGCGCTTGCCCGG
ACATCGCAACATGCATGAAGACAGAGAAGGGTTGTCGGCTTACCCAAACC
ACCCCTCCTTACCCACCACGCACCACAATCGTTCAGAAGGAAGGAGGCGG
CCCTCCTCGCCCTGGCCCTGGCCGTCGTCCTATCCCTTACCTGTCTAGGC
AACATCTGCTGCACCAGCGAGCCCACCGCCACCCATTGCGTTTCAGACGC
GCTTGTTCACGGATAGCATTCATCACACTCGCCCATGTCCCCGTTTCGAA
GCGGGGAGAGTTTTACCTCGATCGCCTCCACGAGCCATAGCACGGCTTCA
ATACCTTCTACATACTCTCCGTCCTCTCCACCGGGGCGAGAGGTAACGAT
GGGGGAGACGGACGACAGAGAAAGCTTATTCAATGACACGCTAGAGGGAG
GGGAGCGAAGAAGAGAAGGGGGAAGTGAGAGAAGGGAAAGATGGGGAGAA
GAGATGAAGGAGGAGGAGGGAGGAGGAGCGACCAAAGGCTCGATGCGATT
GAAAGAGCAGGAGGAAAGCAGTGAGATGGCTAGGTGGAGGACGATGTGCT
GCCCACACTCTGCTGCTGCTGGTGTGGCTAGCACTGCTGATGATCGACGC
ACCTGCCCGGGCCTGCGGACCGCAGGGTGGGTGGTGGTCGTGTTGTCGCT
TGGGGTTTTGGCGGTGCTGAGTGCGTACCTGGGCTTGGTGGCTACGATCG
CACCACCGCTCATCACCCTCAACCCAAGTGCTGTCCAAAATCTCCTTATC
GACGGGCCCTATCTTAACGCGGTGGTTTCGTTCGACGGCATTGTTGACAA
TAAAAGCAGGTTCAAAGTCCATATCGAAGATCCAGCCGTACACGTGAGCT
ATCACGGAGCGGCTCTAGGCATGGTAAGAGGGAGGAAAGGGGGGAAGGGA
GGTAAAGGATAAAAAAGAAAAGGAAGGAAACGAGAAAAGAGAGAGGTTGG
TAGGAGAAAGAGGGGGAAAAATCTCCCTATGGAGGAAAAAAAAAGAAGAC
TAACATTTGCCTTTCTTCCCCGTCTTTCCCCCTCCCCCCCTCCCTCCCTC
CCT back to topprotein sequence of jgi.p|Nanoce1779_2|200300 >mRNA_8038-protein ID=mRNA_8038-protein|Name=jgi.p|Nanoce1779_2|200300|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MSPFRSGESFTSIASTSHSTASIPSTYSPSSPPGREVTMGETDDRESLFN
DTLEGGERRREGGSERRERWGEEMKEEEGGGATKGSMRLKEQEESSEMAR
WRTMCCPHSAAAGVASTADDRRTCPGLRTAGWVVVVLSLGVLAVLSAYLG
LVATIAPPLITLNPSAVQNLLIDGPYLNAVVSFDGIVDNKSRFKVHIEDP
AVHVSYHGAALGMVRGRKGGKGGKG* back to topmRNA from alignment at scaffold_25:11975..13420+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8038 ID=mRNA_8038|Name=jgi.p|Nanoce1779_2|200300|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp|location=Sequence derived from alignment at scaffold_25:11975..13420+ (Nannochloropsis oceanica)
CCTGTAGGGAAAGGGGAAATTCTGATGTATTTTAATGCCCCAAAATGCCG
ATCACGATTATATTTAATTCTCTTGTGTCTTGTAGGAAACAGGAAGACAA
AGAGATGAAAGGGGAGGAAAAATCACCGAGGACTCCTTGGAGAACGCAGC
TGAATTGAAATTTTCATCATTGCTTTGACCATTCACTTCTGTTGTGGGTA
TCACCCGATCAGTGCTTGTTTCCTCCTACATAGAGTGGGCGCTTGCCCGG
ACATCGCAACATGCATGAAGACAGAGAAGGGTTGTCGGCTTACCCAAACC
ACCCCTCCTTACCCACCACGCACCACAATCGTTCAGAAGGAAGGAGGCGG
CCCTCCTCGCCCTGGCCCTGGCCGTCGTCCTATCCCTTACCTGTCTAGGC
AACATCTGCTGCACCAGCGAGCCCACCGCCACCCATTGCGTTTCAGACGC
GCTTGTTCACGGATAGCATTCATCACACTCGCCCATGTCCCCGTTTCGAA
GCGGGGAGAGTTTTACCTCGATCGCCTCCACGAGCCATAGCACGGCTTCA
ATACCTTCTACATACTCTCCGTCCTCTCCACCGGGGCGAGAGGTAACGAT
GGGGGAGACGGACGACAGAGAAAGCTTATTCAATGACACGCTAGAGGGAG
GGGAGCGAAGAAGAGAAGGGGGAAGTGAGAGAAGGGAAAGATGGGGAGAA
GAGATGAAGGAGGAGGAGGGAGGAGGAGCGACCAAAGGCTCGATGCGATT
GAAAGAGCAGGAGGAAAGCAGTGAGATGGCTAGGTGGAGGACGATGTGCT
GCCCACACTCTGCTGCTGCTGGTGTGGCTAGCACTGCTGATGATCGACGC
ACCTGCCCGGGCCTGCGGACCGCAGGGTGGGTGGTGGTCGTGTTGTCGCT
TGGGGTTTTGGCGGTGCTGAGTGCGTACCTGGGCTTGGTGGCTACGATCG
CACGTAAGTTATGGCATGACTAAAGGAGTAGAGGAATGGGTGTGAATATG
ATTGTGTATGTTTCACAGGCACATTTTCGATCTAACTTTACTTAAATCTT
CCTGCCTCTCACCCTTCCACCCTCCCTCCCTCCCTCCCTCTCACAGCACC
GCTCATCACCCTCAACCCAAGTGCTGTCCAAAATCTCCTTATCGACGGGC
CCTATCTTAACGCGGTGGTTTCGTTCGACGGCATTGTTGACAATAAAAGC
AGGTTCAAAGTCCATATCGAAGATCCAGCCGTACACGTGAGCTATCACGG
AGCGGCTCTAGGCATGGTAAGAGGGAGGAAAGGGGGGAAGGGAGGTAAAG
GATAAAAAAGAAAAGGAAGGAAACGAGAAAAGAGAGAGGTTGGTAGGAGA
AAGAGGGGGAAAAATCTCCCTATGGAGGAAAAAAAAAGAAGACTAACATT
TGCCTTTCTTCCCCGTCTTTCCCCCTCCCCCCCTCCCTCCCTCCCT back to topCoding sequence (CDS) from alignment at scaffold_25:11975..13420+ >mRNA_8038 ID=mRNA_8038|Name=jgi.p|Nanoce1779_2|200300|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_25:11975..13420+ (Nannochloropsis oceanica)
ATGTCCCCGTTTCGAAGCGGGGAGAGTTTTACCTCGATCGCCTCCACGAG
CCATAGCACGGCTTCAATACCTTCTACATACTCTCCGTCCTCTCCACCGG
GGCGAGAGGTAACGATGGGGGAGACGGACGACAGAGAAAGCTTATTCAAT
GACACGCTAGAGGGAGGGGAGCGAAGAAGAGAAGGGGGAAGTGAGAGAAG
GGAAAGATGGGGAGAAGAGATGAAGGAGGAGGAGGGAGGAGGAGCGACCA
AAGGCTCGATGCGATTGAAAGAGCAGGAGGAAAGCAGTGAGATGGCTAGG
TGGAGGACGATGTGCTGCCCACACTCTGCTGCTGCTGGTGTGGCTAGCAC
TGCTGATGATCGACGCACCTGCCCGGGCCTGCGGACCGCAGGGTGGGTGG
TGGTCGTGTTGTCGCTTGGGGTTTTGGCGGTGCTGAGTGCGTACCTGGGC
TTGGTGGCTACGATCGCACCACCGCTCATCACCCTCAACCCAAGTGCTGT
CCAAAATCTCCTTATCGACGGGCCCTATCTTAACGCGGTGGTTTCGTTCG
ACGGCATTGTTGACAATAAAAGCAGGTTCAAAGTCCATATCGAAGATCCA
GCCGTACACGTGAGCTATCACGGAGCGGCTCTAGGCATGGTAAGAGGGAG
GAAAGGGGGGAAGGGAGGTAAAGGATAAATGTCCCCGTTTCGAAGCGGGG
AGAGTTTTACCTCGATCGCCTCCACGAGCCATAGCACGGCTTCAATACCT
TCTACATACTCTCCGTCCTCTCCACCGGGGCGAGAGGTAACGATGGGGGA
GACGGACGACAGAGAAAGCTTATTCAATGACACGCTAGAGGGAGGGGAGC
GAAGAAGAGAAGGGGGAAGTGAGAGAAGGGAAAGATGGGGAGAAGAGATG
AAGGAGGAGGAGGGAGGAGGAGCGACCAAAGGCTCGATGCGATTGAAAGA
GCAGGAGGAAAGCAGTGAGATGGCTAGGTGGAGGACGATGTGCTGCCCAC
ACTCTGCTGCTGCTGGTGTGGCTAGCACTGCTGATGATCGACGCACCTGC
CCGGGCCTGCGGACCGCAGGGTGGGTGGTGGTCGTGTTGTCGCTTGGGGT
TTTGGCGGTGCTGAGTGCGTACCTGGGCTTGGTGGCTACGATCGCACCAC
CGCTCATCACCCTCAACCCAAGTGCTGTCCAAAATCTCCTTATCGACGGG
CCCTATCTTAACGCGGTGGTTTCGTTCGACGGCATTGTTGACAATAAAAG
CAGGTTCAAAGTCCATATCGAAGATCCAGCCGTACACGTGAGCTATCACG
GAGCGGCTCTAGGCATGGTAAGAGGGAGGAAAGGGGGGAAGGGAGGTAAA
GGATAA back to top
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