jgi.p|Nanoce1779_2|602271, mRNA_8037 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602271
Unique Name	mRNA_8037
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1627
Alignment location	scaffold_25:9649..11712 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602357
Track	FilteredModels2
ProteinId	602271

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:9649..11712 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602271	gene_8037	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602271	mRNA_8037-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8037	CDS_8037	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:9649..11712+
coding sequence from alignment at scaffold_25:9649..11712+

mRNA sequence

>mRNA_8037 ID=mRNA_8037|Name=jgi.p|Nanoce1779_2|602271|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp
AGGCACGACGCCTTAAAATCTACCAGCCAGGCTTGGGTAGCAGTAGCGTA
GCAAGGAGCAGCCCCGCAGTCTCAAGAGACGCATGCCTCGCCAGGAAGAC
TCTTCGGAAGTCGGCAGCACGAAAAGTGATAGGAGCAATGGCAGCAGCAG
GAGCAGCAAGAGCAGAAGCAGCAGCGACGGCAACGTTGGGGACAGCAGCA
ACGATGTGAAAGGTAGCGTGACGGTGGCACCGCCTCCAGACAGCACAAGC
AGCGGCAACGTCAGTAATGGGAGCGGGCCTCGACGGCACGACGGAGACAA
GAAGGATAGCACCAGCACCAGCAGCAGCGGCAAAATGAAGGACAAGAAAG
AGAAGAAGGATAACAAAAAGCATAAGAAGGAGAAGAAGGAGAAGAAGGAG
AAGAAAACCAGTCAACATAATCACCATAAGAAACGCACGCGCGAAGACGA
TTCCGCCTCGAGCGACAGCGGAGAGAGTGAGGGAATGGAGGAGGGAGGAA
GGGAAGGAGCCAAGAAACATCGGCGGAAGGAGGAGAAAGGTGAGAGAGAG
GAGCGGCGGCTAGTCAAGGAAGCCATGAAATATTTAGAGAAGCACGGTGG
TAGTGGTGGTGGAGGTGGCAGCAGCAAGAGCAAAAGTAAAAGCAAGAGCA
GCAGCAGCAGCAACAGCAAGGACAAAAAAGAGAAGGAAAAGAAGAAGAGA
AAAAAAAAAGAGGAAAAGATGAAGGGGGATGCAGCTTCACCAGCGCGACC
GATACCTGAAGTGCTGCATGCGGTAGATGACTATTATCGCCGACAGGTTG
AGTTTCGTGTCTGGCTCCGTCTGGTCAAGAGGATTAACTTTGAGACCCTT
ACGCGGGAGAAAGCCCAAGAGCACTTCGACCGTTTCGTATCCACGTGGAA
CAAAGGCCTCCTTCCCGACATGTACTACGACGGTGTTCCTGTCCACGTCC
AGACGGAAGCACACAAGACGGGCCATGTCTGGGGCTTTGCGAAGAAGATG
AGCGACGGGGAGAAGGATGCCTTGGAACGAATGGCAAATTCGATCGTCCG
GACCACCACTGGAGGGGGGGGAGGGAGGGGGATGACTAGTTTGAATAGCA
GTGGTACCGGTAGTCATCATCATATGCCTCCACCCGAGCGACCAACGTCC
TCCTCGTCATCATCTTCCTCCTCCGCTCACCACCTTGCTCTTACGGGGAC
CCGTGATAGAGAACGAAAGGCTTTAATAATAGAAGAAAATGTGCCCAAGG
CGACTGGTCGGGAAGCGCAGCTTGCAGCCCGACATGCCAAGGGGGAGAGA
ATGCACGGTGCGGCTCGAGCGAAGGAGGAGGGGAGGTATGGGTTGGAGTT
ATCCGAGGCTGCGTTGGGGATAGGAGGGCGGGATGTAGAGGGGGAGGAGA
TGAGGCGAAGATTGGCCAGGCAAAAGGAGCTGGGGAACCAACGCCAACAG
GAACAGAAAGAGAGGATGGAAGAGGCGGCGAGGAAGGAGAAGGACGCTAT
GCAGAAATTGTTTGACACGTTGGGGTTGAAGCCAGGGCAGAGGATTACAA
TCCCGAAGAGGACCACGGAGTAGGGAGGGAGGGAGGGAAGGAGGAAGGGG
CAAGACTTAAAGAATCAAAATAAATTT

protein sequence of jgi.p|Nanoce1779_2|602271

>mRNA_8037-protein ID=mRNA_8037-protein|Name=jgi.p|Nanoce1779_2|602271|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MPRQEDSSEVGSTKSDRSNGSSRSSKSRSSSDGNVGDSSNDVKGSVTVAP
PPDSTSSGNVSNGSGPRRHDGDKKDSTSTSSSGKMKDKKEKKDNKKHKKE
KKEKKEKKTSQHNHHKKRTREDDSASSDSGESEGMEEGGREGAKKHRRKE
EKGEREERRLVKEAMKYLEKHGGSGGGGGSSKSKSKSKSSSSSNSKDKKE
KEKKKRKKKEEKMKGDAASPARPIPEVLHAVDDYYRRQVEFRVWLRLVKR
INFETLTREKAQEHFDRFVSTWNKGLLPDMYYDGVPVHVQTEAHKTGHVW
GFAKKMSDGEKDALERMANSIVRTTTGGGGGRGMTSLNSSGTGSHHHMPP
PERPTSSSSSSSSSAHHLALTGTRDRERKALIIEENVPKATGREAQLAAR
HAKGERMHGAARAKEEGRYGLELSEAALGIGGRDVEGEEMRRRLARQKEL
GNQRQQEQKERMEEAARKEKDAMQKLFDTLGLKPGQRITIPKRTTE*

mRNA from alignment at scaffold_25:9649..11712+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8037 ID=mRNA_8037|Name=jgi.p|Nanoce1779_2|602271|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at scaffold_25:9649..11712+ (Nannochloropsis oceanica)
AGGCACGACGCCTTAAAATCTACCAGCCAGGCTTGGGTAGCAGTAGCGTA
GCAAGGAGCAGCCCCGCAGTCTCAAGAGACGCATGCCTCGCCAGGAAGAC
TCTTCGGAAGTCGGCAGCACGAAAAGTGATAGGAGCAATGGCAGCAGCAG
GAGCAGCAAGAGCAGAAGCAGCAGCGACGGCAACGTTGGGGACAGCAGCA
ACGATGTGAAAGGTAGCGTGACGGTGGCACCGCCTCCAGACAGCACAAGC
AGCGGCAACGTCAGTAATGGGAGCGGGCCTCGACGGCACGACGGTACGTG
CAATGCCTAACCCCGGTTCCACGCCCTGCCTTACTGGCTTTGATTGTATG
CGTGTAATGAGCTATCAGACTCCTGTTTGCGGGCCCGTTTTGCTTTGTAA
AACTCAAGTGTTGTCAAGTCTGCCTTTCATTTACTCACGCACACGACCCT
TCCCCTACCTTCCTACTTTAGGAGACAAGAAGGATAGCACCAGCACCAGC
AGCAGCGGCAAAATGAAGGACAAGAAAGAGAAGAAGGATAACAAAAAGCA
TAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAAACCAGTCAACATAATC
ACCATAAGAAACGCACGCGCGAAGACGATTCCGCCTCGAGCGACAGCGGA
GAGAGTGAGGGAATGGAGGAGGGAGGAAGGGAAGGAGCCAAGAAACATCG
GCGGAAGGAGGAGAAAGGTGAGAGAGAGGAGCGGCGGCTAGTCAAGGAAG
CCATGAAATATTTAGAGAAGCACGGTGGTAGTGGTGGTGGAGGTGGCAGC
AGCAAGAGCAAAAGTAAAAGCAAGAGCAGCAGCAGCAGCAACAGCAAGGA
CAAAAAAGAGAAGGAAAAGAAGAAGAGAAAAAAAAAAGAGGAAAAGATGA
AGGGGGATGCAGCTTCACCAGCGCGACCGATACCTGAAGTGCTGCATGCG
GTAGATGACTATTATCGCCGACAGGTTGAGTTTCGTGTCTGGCTCCGTCT
GGTCAAGAGGATTAACTTTGAGGTATTAAGGAATGGGAGGAGGGAAGGAG
GGAGCGGGAGAGATGTTCCCACAAATATACAGGCGCTTTCATGTGACTCG
TCTTTCTCACTCCTCCTTACTCCTCCCTCCCTCCCTCCCTCCCTCATTTC
CTCCCTCCCTCCCTCCCTCCTTCCTCCCTCATTTCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCCACCCTCCCACCCTCCCACCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGACCCTTACGCGGGAGAAAG
CCCAAGAGCACTTCGACCGTTTCGTATCCACGTGGAACAAAGGCCTCCTT
CCCGACATGTACTACGACGGTGTTCCTGTCCACGTCCAGACGGAAGCACA
CAAGACGGGCCATGTCTGGGGCTTTGCGAAGAAGATGAGCGACGGGGAGA
AGGATGCCTTGGAACGAATGGCAAATTCGATCGTCCGGACCACCACTGGA
GGGGGGGGAGGGAGGGGGATGACTAGTTTGAATAGCAGTGGTACCGGTAG
TCATCATCATATGCCTCCACCCGAGCGACCAACGTCCTCCTCGTCATCAT
CTTCCTCCTCCGCTCACCACCTTGCTCTTACGGGGACCCGTGATAGAGAA
CGAAAGGCTTTAATAATAGAAGAAAATGTGCCCAAGGCGACTGGTCGGGA
AGCGCAGCTTGCAGCCCGACATGCCAAGGGGGAGAGAATGCACGGTGCGG
CTCGAGCGAAGGAGGAGGGGAGGTATGGGTTGGAGTTATCCGAGGCTGCG
TTGGGGATAGGAGGGCGGGATGTAGAGGGGGAGGAGATGAGGCGAAGATT
GGCCAGGCAAAAGGAGCTGGGGAACCAACGCCAACAGGAACAGAAAGAGA
GGATGGAAGAGGCGGCGAGGAAGGAGAAGGACGCTATGCAGAAATTGTTT
GACACGTTGGGGTTGAAGCCAGGGCAGAGGATTACAATCCCGAAGAGGAC
CACGGAGTAGGGAGGGAGGGAGGGAAGGAGGAAGGGGCAAGACTTAAAGA
ATCAAAATAAATTT

Coding sequence (CDS) from alignment at scaffold_25:9649..11712+

>mRNA_8037 ID=mRNA_8037|Name=jgi.p|Nanoce1779_2|602271|organism=Nannochloropsis oceanica|type=CDS|length=4473bp|location=Sequence derived from alignment at scaffold_25:9649..11712+ (Nannochloropsis oceanica)
ATGCCTCGCCAGGAAGACTCTTCGGAAGTCGGCAGCACGAAAAGTGATAG
GAGCAATGGCAGCAGCAGGAGCAGCAAGAGCAGAAGCAGCAGCGACGGCA
ACGTTGGGGACAGCAGCAACGATGTGAAAGGTAGCGTGACGGTGGCACCG
CCTCCAGACAGCACAAGCAGCGGCAACGTCAGTAATGGGAGCGGGCCTCG
ACGGCACGACGGAGACAAGAAGGATAGCACCAGCACCAGCAGCAGCGGCA
AAATGAAGGACAAGAAAGAGAAGAAGGATAACAAAAAGCATAAGAAGGAG
AAGAAGGAGAAGAAGGAGAAGAAAACCAGTCAACATAATCACCATAAGAA
ACGCACGCGCGAAGACGATTCCGCCTCGAGCGACAGCGGAGAGAGTGAGG
GAATGGAGGAGGGAGGAAGGGAAGGAGCCAAGAAACATCGGCGGAAGGAG
GAGAAAGGTGAGAGAGAGGAGCGGCGGCTAGTCAAGGAAGCCATGAAATA
TTTAGAGAAGCACGGTGGTAGTGGTGGTGGAGGTGGCAGCAGCAAGAGCA
AAAGTAAAAGCAAGAGCAGCAGCAGCAGCAACAGCAAGGACAAAAAAGAG
AAGGAAAAGAAGAAGAGAAAAAAAAAAGAGGAAAAGATGAAGGGGGATGC
AGCTTCACCAGCGCGACCGATACCTGAAGTGCTGCATGCGGTAGATGACT
ATTATCGCCGACAGGTTGAGTTTCGTGTCTGGCTCCGTCTGGTCAAGAGG
ATTAACTTTGAGACCCTTACGCGGGAGAAAGCCCAAGAGCACTTCGACCG
TTTCGTATCCACGTGGAACAAAGGCCTCCTTCCCGACATGTACTACGACG
GTGTTCCTGTCCACGTCCAGACGGAAGCACACAAGACGGGCCATGTCTGG
GGCTTTGCGAAGAAGATGAGCGACGGGGAGAAGGATGCCTTGGAACGAAT
GGCAAATTCGATCGTCCGGACCACCACTGGAGGGGGGGGAGGGAGGGGGA
TGACTAGTTTGAATAGCAGTGGTACCGGTAGTCATCATCATATGCCTCCA
CCCGAGCGACCAACGTCCTCCTCGTCATCATCTTCCTCCTCCGCTCACCA
CCTTGCTCTTACGGGGACCCGTGATAGAGAACGAAAGGCTTTAATAATAG
AAGAAAATGTGCCCAAGGCGACTGGTCGGGAAGCGCAGCTTGCAGCCCGA
CATGCCAAGGGGGAGAGAATGCACGGTGCGGCTCGAGCGAAGGAGGAGGG
GAGGTATGGGTTGGAGTTATCCGAGGCTGCGTTGGGGATAGGAGGGCGGG
ATGTAGAGGGGGAGGAGATGAGGCGAAGATTGGCCAGGCAAAAGGAGCTG
GGGAACCAACGCCAACAGGAACAGAAAGAGAGGATGGAAGAGGCGGCGAG
GAAGGAGAAGGACGCTATGCAGAAATTGTTTGACACGTTGGGGTTGAAGC
CAGGGCAGAGGATTACAATCCCGAAGAGGACCACGGAGTAGATGCCTCGC
CAGGAAGACTCTTCGGAAGTCGGCAGCACGAAAAGTGATAGGAGCAATGG
CAGCAGCAGGAGCAGCAAGAGCAGAAGCAGCAGCGACGGCAACGTTGGGG
ACAGCAGCAACGATGTGAAAGGTAGCGTGACGGTGGCACCGCCTCCAGAC
AGCACAAGCAGCGGCAACGTCAGTAATGGGAGCGGGCCTCGACGGCACGA
CGGAGACAAGAAGGATAGCACCAGCACCAGCAGCAGCGGCAAAATGAAGG
ACAAGAAAGAGAAGAAGGATAACAAAAAGCATAAGAAGGAGAAGAAGGAG
AAGAAGGAGAAGAAAACCAGTCAACATAATCACCATAAGAAACGCACGCG
CGAAGACGATTCCGCCTCGAGCGACAGCGGAGAGAGTGAGGGAATGGAGG
AGGGAGGAAGGGAAGGAGCCAAGAAACATCGGCGGAAGGAGGAGAAAGGT
GAGAGAGAGGAGCGGCGGCTAGTCAAGGAAGCCATGAAATATTTAGAGAA
GCACGGTGGTAGTGGTGGTGGAGGTGGCAGCAGCAAGAGCAAAAGTAAAA
GCAAGAGCAGCAGCAGCAGCAACAGCAAGGACAAAAAAGAGAAGGAAAAG
AAGAAGAGAAAAAAAAAAGAGGAAAAGATGAAGGGGGATGCAGCTTCACC
AGCGCGACCGATACCTGAAGTGCTGCATGCGGTAGATGACTATTATCGCC
GACAGGTTGAGTTTCGTGTCTGGCTCCGTCTGGTCAAGAGGATTAACTTT
GAGACCCTTACGCGGGAGAAAGCCCAAGAGCACTTCGACCGTTTCGTATC
CACGTGGAACAAAGGCCTCCTTCCCGACATGTACTACGACGGTGTTCCTG
TCCACGTCCAGACGGAAGCACACAAGACGGGCCATGTCTGGGGCTTTGCG
AAGAAGATGAGCGACGGGGAGAAGGATGCCTTGGAACGAATGGCAAATTC
GATCGTCCGGACCACCACTGGAGGGGGGGGAGGGAGGGGGATGACTAGTT
TGAATAGCAGTGGTACCGGTAGTCATCATCATATGCCTCCACCCGAGCGA
CCAACGTCCTCCTCGTCATCATCTTCCTCCTCCGCTCACCACCTTGCTCT
TACGGGGACCCGTGATAGAGAACGAAAGGCTTTAATAATAGAAGAAAATG
TGCCCAAGGCGACTGGTCGGGAAGCGCAGCTTGCAGCCCGACATGCCAAG
GGGGAGAGAATGCACGGTGCGGCTCGAGCGAAGGAGGAGGGGAGGTATGG
GTTGGAGTTATCCGAGGCTGCGTTGGGGATAGGAGGGCGGGATGTAGAGG
GGGAGGAGATGAGGCGAAGATTGGCCAGGCAAAAGGAGCTGGGGAACCAA
CGCCAACAGGAACAGAAAGAGAGGATGGAAGAGGCGGCGAGGAAGGAGAA
GGACGCTATGCAGAAATTGTTTGACACGTTGGGGTTGAAGCCAGGGCAGA
GGATTACAATCCCGAAGAGGACCACGGAGTAGATGCCTCGCCAGGAAGAC
TCTTCGGAAGTCGGCAGCACGAAAAGTGATAGGAGCAATGGCAGCAGCAG
GAGCAGCAAGAGCAGAAGCAGCAGCGACGGCAACGTTGGGGACAGCAGCA
ACGATGTGAAAGGTAGCGTGACGGTGGCACCGCCTCCAGACAGCACAAGC
AGCGGCAACGTCAGTAATGGGAGCGGGCCTCGACGGCACGACGGAGACAA
GAAGGATAGCACCAGCACCAGCAGCAGCGGCAAAATGAAGGACAAGAAAG
AGAAGAAGGATAACAAAAAGCATAAGAAGGAGAAGAAGGAGAAGAAGGAG
AAGAAAACCAGTCAACATAATCACCATAAGAAACGCACGCGCGAAGACGA
TTCCGCCTCGAGCGACAGCGGAGAGAGTGAGGGAATGGAGGAGGGAGGAA
GGGAAGGAGCCAAGAAACATCGGCGGAAGGAGGAGAAAGGTGAGAGAGAG
GAGCGGCGGCTAGTCAAGGAAGCCATGAAATATTTAGAGAAGCACGGTGG
TAGTGGTGGTGGAGGTGGCAGCAGCAAGAGCAAAAGTAAAAGCAAGAGCA
GCAGCAGCAGCAACAGCAAGGACAAAAAAGAGAAGGAAAAGAAGAAGAGA
AAAAAAAAAGAGGAAAAGATGAAGGGGGATGCAGCTTCACCAGCGCGACC
GATACCTGAAGTGCTGCATGCGGTAGATGACTATTATCGCCGACAGGTTG
AGTTTCGTGTCTGGCTCCGTCTGGTCAAGAGGATTAACTTTGAGACCCTT
ACGCGGGAGAAAGCCCAAGAGCACTTCGACCGTTTCGTATCCACGTGGAA
CAAAGGCCTCCTTCCCGACATGTACTACGACGGTGTTCCTGTCCACGTCC
AGACGGAAGCACACAAGACGGGCCATGTCTGGGGCTTTGCGAAGAAGATG
AGCGACGGGGAGAAGGATGCCTTGGAACGAATGGCAAATTCGATCGTCCG
GACCACCACTGGAGGGGGGGGAGGGAGGGGGATGACTAGTTTGAATAGCA
GTGGTACCGGTAGTCATCATCATATGCCTCCACCCGAGCGACCAACGTCC
TCCTCGTCATCATCTTCCTCCTCCGCTCACCACCTTGCTCTTACGGGGAC
CCGTGATAGAGAACGAAAGGCTTTAATAATAGAAGAAAATGTGCCCAAGG
CGACTGGTCGGGAAGCGCAGCTTGCAGCCCGACATGCCAAGGGGGAGAGA
ATGCACGGTGCGGCTCGAGCGAAGGAGGAGGGGAGGTATGGGTTGGAGTT
ATCCGAGGCTGCGTTGGGGATAGGAGGGCGGGATGTAGAGGGGGAGGAGA
TGAGGCGAAGATTGGCCAGGCAAAAGGAGCTGGGGAACCAACGCCAACAG
GAACAGAAAGAGAGGATGGAAGAGGCGGCGAGGAAGGAGAAGGACGCTAT
GCAGAAATTGTTTGACACGTTGGGGTTGAAGCCAGGGCAGAGGATTACAA
TCCCGAAGAGGACCACGGAGTAG

Synonyms

Publications