jgi.p|Nanoce1779_2|602268, mRNA_8036 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602268
Unique Name	mRNA_8036
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2036
Alignment location	scaffold_25:6927..9418 -

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Properties


Property Name	Value
TranscriptId	602354
Track	FilteredModels2
ProteinId	602268

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:6927..9418 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602268	gene_8036	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602268	mRNA_8036-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8036	CDS_8036	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:6927..9418-
coding sequence from alignment at scaffold_25:6927..9418-

mRNA sequence

>mRNA_8036 ID=mRNA_8036|Name=jgi.p|Nanoce1779_2|602268|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
AGAACGCTCCTACTTGTCCTTTGCCGTGCTTTGTCCGGTGGCGACACCGG
TGGTTAAAGGCGGGGTGAGGCAAGCAGCATAGGACCATCGTGCTGGGTCG
TAGCTGTCAAGCAAGACATCAGGGCACCATTCGCCGTACACTCGCCTCTC
CTACGCGGCCGCGGTGAAGGTCGCCAGTCAGGGATCGCTTCTTTGCTAGG
ATATCCGATTATTTTTTTCATTAAGACGCAGGGAGGGTCATATACTCATT
ATCAGTGCCCTCAAGAAAATGAATATCACCCGTCGGACAACCTCCTTTCC
GGACCCGCACATTAACACGCAGCACTTGGAAGGGGTTGATGAGGAAGGCG
GTGATGCTGCTACTAATGGAAACCGGTCCCAGAACCTCCCTCTTTCAGGC
GAGCCGCAGCAGCACGCGGGAGGCAAAGGCCGTCGGCACCGGCGGCGTCC
TCGTCGTGGACATCGACAACGTCGGTCATGGGCATACCACGAAGATGATG
GGTTTCAATACGACTATCATTATGATGAGGATGAGGGTGAGGAGGAGGGG
GAGGGTGTTTGCTGCTGTAGGGAGGGTTGCTGTGAGTCGTTTCTTTTTTT
CCGGTGCGCAGTGTGTGGGTTATGTGGTCCTGGAGGAAGGGGGGGAAGGC
CTTTCCGATGGCTGCGGCGGGCGGGGAGGAAGACTTGGAGATTCTTCGAT
AACCATCGACGGGCTTGTTTGGGTTTGACACAATTAAACCCTTCCTCTGA
TGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTATTATT
TGGAAGAGGAAGGGGAGGAGGGAGGGTTGGCCCCTGCTGGTGGTGCGCGA
CGCAGAAACCGAGGGGGGCAACAAGGAGGGGGAGGAAAAGGAGGGGGAGG
ACGGGAAGTAAGGTTCTCGGGAGGCTCGTACCAGAGCTTGAGGGATACCC
CGTCAACGAGTTCGTTCCGGGCGTTGCACCGGTCTTCCACCATCTCAGTC
GAGTACTTGAAGAGGAGGGATCGACGTCCTCTGCACATGGCCTGGGCCTT
TTTTTTCGTCTACGTGATAGCGGGCGTTTGGTACTTCATGTGGTTCAAGT
CCCTGGACTTCCACAATGCCCTTTTCCAGATCATTAACAGTTTGAGCGCT
GTGGGGGTAAGGGGTCCTATATGTATTTAATATGTCATCTTCTTTGTTTT
TTAATTACCCCATCGGTGGCCGACGATATTCATGTGTTTCCCTCCCCCAT
TTTTCCTTTGCTCCATTCTTTGCCTCCCTTTTGTCCTTGAGTACGGAGAT
TTTAGTCCCACCACGCCGACTGAGCAGGCCCTCACCATCGTCTTCCTCTT
TGTTGGCGTGGGCTTTATGGGCTCTCTGATCGGTATTGTGGCCTCCTCCC
GCTTGGACTACCAAGAGGACGTCAAGATAGAATGGCTCGCCCGACAGGAG
GAGGGGCAGACGGGGAGGACAGGCGAGGGAGGGGAGACGGAAGTAGTGGA
AGAGCCGGGCGTGAGCTTGATGAGTGCGCAGATGAGGAGGGCGCGGCAAC
GGGTGATATGGAACATAGGGAGGATGCTGCTGGCCATTGCGGTGGGGACG
GTGGTGCTGGTGCCCGTGGAGGGATGGACGTGGGGCTACGGCGTGTTCTT
TTCCTCGCAGATGATCATGGGCAGCGGGTGGGTCGACGTCATGCCCATCT
CTGAGTTTGGGGTCTGGTTCTCGCTTTTCTATGCGTTGATGGGCAGTATC
TTAATTTACCATGCTTTGGGAGACTTGGCCTCCATCCCTCTGACCCTGCG
TCAAAGTCTGTTTGAGGCAGAGGTGCTGTCGCAGTGGGGAGACCATCTAA
CGGAGGATAAGCTGTACAGTCTTTCAAGAAGAGCCAGTGAAATCACAGCC
GCGGCCATGTCCTCGTCCCCCTTGCGAAGGGCCTCCGCGCTCCCGGCGAA
GATGGGAGGGACGGCGGTGGGGAATGTGGGGCGAAATGACGAGCCGTTGT
TGTATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC

protein sequence of jgi.p|Nanoce1779_2|602268

>mRNA_8036-protein ID=mRNA_8036-protein|Name=jgi.p|Nanoce1779_2|602268|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MNITRRTTSFPDPHINTQHLEGVDEEGGDAATNGNRSQNLPLSGEPQQHA
GGKGRRHRRRPRRGHRQRRSWAYHEDDGFQYDYHYDEDEGEEEGEGVCCC
REGCCESFLFFRCAVCGLCGPGGRGGRPFRWLRRAGRKTWRFFDNHRRAC
LGLTQLNPSSDDEEEEEEEEEEEEDYYLEEEGEEGGLAPAGGARRRNRGG
QQGGGGKGGGGREVRFSGGSYQSLRDTPSTSSFRALHRSSTISVEYLKRR
DRRPLHMAWAFFFVYVIAGVWYFMWFKSLDFHNALFQIINSLSAVGVRGP
ICI*

mRNA from alignment at scaffold_25:6927..9418-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8036 ID=mRNA_8036|Name=jgi.p|Nanoce1779_2|602268|organism=Nannochloropsis oceanica|type=mRNA|length=2492bp|location=Sequence derived from alignment at scaffold_25:6927..9418- (Nannochloropsis oceanica)
AGAACGCTCCTACTTGTCCTTTGCCGTGCTTTGTCCGGTGGCGACACCGG
TGGTTAAAGGCGGGGTGAGGCAAGCAGCATAGGACCATCGTGCTGGGTCG
TAGCTGTCAAGCAAGACATCAGGGCACCATTCGCCGTACACTCGCCTCTC
CTACGCGGCCGCGGTGAAGGTCGCCAGTCAGGGATCGCTTCTTTGCTAGG
ATATCCGATTATTTTTTTCATTAAGACGCAGGGAGGGTCATATACTCATT
ATCAGTGCCCTCAAGAAAATGAATATCACCCGTCGGACAACCTCCTTTCC
GGACCCGCACATTAACACGCAGCACTTGGAAGGGGTTGATGAGGAAGGCG
GTGATGCTGCTACTAATGGAAACCGGTCCCAGAACCTCCCTCTTTCAGGC
GAGCCGCAGCAGCACGCGGGAGGCAAAGGCCGTCGGCACCGGCGGCGTCC
TCGTCGTGGACATCGACAACGTCGGTCATGGGCATACCACGAAGATGATG
GGTTTCAATACGACTATCATTATGATGAGGATGAGGGTGAGGAGGAGGGG
GAGGGTGTTTGCTGCTGTAGGGAGGGTTGCTGTGAGTCGTTTCTTTTTTT
CCGGTGCGCAGTGTGTGGGTTATGTGGTCCTGGAGGAAGGGGGGGAAGGC
CTTTCCGATGGCTGCGGCGGGCGGGGAGGAAGACTTGGAGATTCTTCGAT
AACCATCGACGGGCTTGTTTGGGTTTGACACAATTAAACCCTTCCTCTGA
TGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTATTATT
TGGAAGAGGAAGGGGAGGAGGGAGGGTTGGCCCCTGCTGGTGGTGCGCGA
CGCAGAAACCGAGGGGGGCAACAAGGAGGGGGAGGAAAAGGAGGGGGAGG
ACGGGAAGTAAGGTTCTCGGGAGGCTCGTACCAGAGCTTGAGGGATACCC
CGTCAACGAGTTCGTTCCGGGCGTTGCACCGGTCTTCCACCATCTCAGTC
GAGTACTTGAAGAGGAGGGATCGACGGTGCGTCCTCCCTCCCTCCCTCCC
TTCTTCAATCCTTCTTTCTCTTTATCGTAATCTCACCTCCTTCCTCATCT
TTTCTAATGTCCGTTGCTTATTATGATTATGACGCTTTGCTTACTTAAAC
ATGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
CCTGCAGTCCTCTGCACATGGCCTGGGCCTTTTTTTTCGTCTACGTGATA
GCGGGCGTTTGGTACTTCATGTGGTTCAAGTCCCTGGACTTCCACAATGC
CCTTTTCCAGATCATTAACAGTTTGAGCGCTGTGGGGGTAAGGGGTCCTA
TATGTATTTAATATGTCATCTTCTTTGTTTTTTAATTACCCCATCGGTGG
CCGACGATATTCATGTGTTTCCCTCCCCCATTTTTCCTTTGCTCCATTCT
TTGCCTCCCTTTTGTCCTTGAGTACGGAGATTTTAGTCCCACCACGCCGA
CTGAGCAGGCCCTCACCATCGTCTTCCTCTTTGTTGGCGTGGGCTTTATG
GGCTCTCTGATCGGTATTGTGGCCTCCTCCCGCTTGGACTACCAAGAGGA
CGTCAAGATAGAATGGCTCGCCCGACAGGAGGAGGGGCAGACGGGGAGGA
CAGGCGAGGGAGGGGAGACGGAAGTAGTGGAAGAGCCGGGCGTGAGCTTG
ATGAGTGCGCAGATGAGGAGGGCGCGGCAACGGGTGATATGGAACATAGG
GAGGATGCTGCTGGCCATTGCGGTGGGGACGGTGGTGCTGGTGCCCGTGG
AGGGATGGACGTGGGGGTGAGTCCAGGGAGGAAGGAAAGAAGTGCGACAC
AAAGGGCAAAACCCCACTCAACCCTCCTCCTTCTCTTCCCCCCTCCTTCC
CTCCCTCCTTCCCTCCCTCCCTCCCTCCAGCTACGGCGTGTTCTTTTCCT
CGCAGATGATCATGGGCAGCGGGTGGGTCGACGTCATGCCCATCTCTGAG
TTTGGGGTCTGGTTCTCGCTTTTCTATGCGTTGATGGGCAGTATCTTAAT
TTACCATGCTTTGGGAGACTTGGCCTCCATCCCTCTGACCCTGCGTCAAA
GTCTGTTTGAGGCAGAGGTGCTGTCGCAGTGGGGAGACCATCTAACGGGT
GCGTATATTGAGTCCATGCCCGCCTATCTTTCGCCCTTCCTGTCGACTTG
TCTCTCTCAAAACCCTCCTCTTCACTCCTACTGCTTGCTTACCCCTTTTT
CGTCATTCCTTCCTTCCCTCCTTCCCTTCCACCCTCCCTCCCACCCTCCC
GGCGCTCAGAGGATAAGCTGTACAGTCTTTCAAGAAGAGCCAGTGAAATC
ACAGCCGCGGCCATGTCCTCGTCCCCCTTGCGAAGGGCCTCCGCGCTCCC
GGCGAAGATGGGAGGGACGGCGGTGGGGAATGTGGGGCGAAATGACGAGC
CGTTGTTGTATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC

Coding sequence (CDS) from alignment at scaffold_25:6927..9418-

>mRNA_8036 ID=mRNA_8036|Name=jgi.p|Nanoce1779_2|602268|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_25:6927..9418- (Nannochloropsis oceanica)
TCCTCTGCACATGGCCTGGGCCTTTTTTTTCGTCTACGTGATAGCGGGCG
TTTGGTACTTCATGTGGTTCAAGTCCCTGGACTTCCACAATGCCCTTTTC
CAGATCATTAACAGTTTGAGCGCTGTGGGGGTAAGGGGTCCTATATGTAT
TTAAATGAATATCACCCGTCGGACAACCTCCTTTCCGGACCCGCACATTA
ACACGCAGCACTTGGAAGGGGTTGATGAGGAAGGCGGTGATGCTGCTACT
AATGGAAACCGGTCCCAGAACCTCCCTCTTTCAGGCGAGCCGCAGCAGCA
CGCGGGAGGCAAAGGCCGTCGGCACCGGCGGCGTCCTCGTCGTGGACATC
GACAACGTCGGTCATGGGCATACCACGAAGATGATGGGTTTCAATACGAC
TATCATTATGATGAGGATGAGGGTGAGGAGGAGGGGGAGGGTGTTTGCTG
CTGTAGGGAGGGTTGCTGTGAGTCGTTTCTTTTTTTCCGGTGCGCAGTGT
GTGGGTTATGTGGTCCTGGAGGAAGGGGGGGAAGGCCTTTCCGATGGCTG
CGGCGGGCGGGGAGGAAGACTTGGAGATTCTTCGATAACCATCGACGGGC
TTGTTTGGGTTTGACACAATTAAACCCTTCCTCTGATGACGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGATTATTATTTGGAAGAGGAAGGG
GAGGAGGGAGGGTTGGCCCCTGCTGGTGGTGCGCGACGCAGAAACCGAGG
GGGGCAACAAGGAGGGGGAGGAAAAGGAGGGGGAGGACGGGAAGTAAGGT
TCTCGGGAGGCTCGTACCAGAGCTTGAGGGATACCCCGTCAACGAGTTCG
TTCCGGGCGTTGCACCGGTCTTCCACCATCTCAGTCGAGTACTTGAAGAG
GAGGGATCGACGTCCTCTGCACATGGCCTGGGCCTTTTTTTTCGTCTACG
TGATAGCGGGCGTTTGGTACTTCATGTGGTTCAAGTCCCTGGACTTCCAC
AATGCCCTTTTCCAGATCATTAACAGTTTGAGCGCTGTGGGGGTAAGGGG
TCCTATATGTATTTAAATGAATATCACCCGTCGGACAACCTCCTTTCCGG
ACCCGCACATTAACACGCAGCACTTGGAAGGGGTTGATGAGGAAGGCGGT
GATGCTGCTACTAATGGAAACCGGTCCCAGAACCTCCCTCTTTCAGGCGA
GCCGCAGCAGCACGCGGGAGGCAAAGGCCGTCGGCACCGGCGGCGTCCTC
GTCGTGGACATCGACAACGTCGGTCATGGGCATACCACGAAGATGATGGG
TTTCAATACGACTATCATTATGATGAGGATGAGGGTGAGGAGGAGGGGGA
GGGTGTTTGCTGCTGTAGGGAGGGTTGCTGTGAGTCGTTTCTTTTTTTCC
GGTGCGCAGTGTGTGGGTTATGTGGTCCTGGAGGAAGGGGGGGAAGGCCT
TTCCGATGGCTGCGGCGGGCGGGGAGGAAGACTTGGAGATTCTTCGATAA
CCATCGACGGGCTTGTTTGGGTTTGACACAATTAAACCCTTCCTCTGATG
ACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTATTATTTG
GAAGAGGAAGGGGAGGAGGGAGGGTTGGCCCCTGCTGGTGGTGCGCGACG
CAGAAACCGAGGGGGGCAACAAGGAGGGGGAGGAAAAGGAGGGGGAGGAC
GGGAAGTAAGGTTCTCGGGAGGCTCGTACCAGAGCTTGAGGGATACCCCG
TCAACGAGTTCGTTCCGGGCGTTGCACCGGTCTTCCACCATCTCAGTCGA
GTACTTGAAGAGGAGGGATCGACG

Synonyms

Publications