jgi.p|Nanoce1779_2|200210, mRNA_8034 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|200210
Unique Name	mRNA_8034
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1417
Alignment location	scaffold_25:2967..5363 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	200296
Track	FilteredModels2
ProteinId	200210

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:2967..5363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|200210	gene_8034	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|200210	mRNA_8034-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8034	CDS_8034	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:2967..5363+
coding sequence from alignment at scaffold_25:2967..5363+

mRNA sequence

>mRNA_8034 ID=mRNA_8034|Name=jgi.p|Nanoce1779_2|200210|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp
TCTTGTCTCTGCTGCTGCTGCTGCTCCTCCTCCTTACACATCTCTTATCA
TCGGCAATACACCTAGCCAACCTTCGCAACACTCCTATTCGCAGTCCCAG
CATACCCACCTCCAGCAGCAACAGCAGCAGCAGCGGCAGGAGGGTGGGAG
GGGAGGAAAGGAGGGAGGTGTGGATGACTTGGTAGCAGCAAAGACACAGC
AGCAAATGCTGGACTCACTACTCACACTTATTAAAGACGTGCATGAAGTC
AAGCGCCAGCTACAGGAGCAGCAGGAGGAGCAGGAGCAGCACAACCACCA
TCAGGCAGTCCCGGCGAAGGCCTTTCCCCCCTCTCCTCCACCGTCTCCAG
ATCGACACCAGCAGCGACAGCAGCAGCATCAGCAGCATCAGCAGCAGCAG
CAGCAGCAAAAACAGCGAAAAGAACAAGAGCAACATCTAACAGACATGCC
CGCCCGTCTCAGTAAACTCGCGGCAGAACTCTCCTCCGTCCAGGAGCAGC
AACGAGTGGCAGCGGCCACAGCTGCAGCAGCCGCAGCTGCTGCAATAGAG
AGGGAACAGCAGGTAGAGGAGGAGGTGAGGATTCTAAAGGTGAAGGTGGA
AGGTATGGCGAATGAATTCAGGCTGCTCCGATTGGCGAGGGACGGGAAAG
AGGAGGGAGGGAGGGAGGGAGCTGTGGAAGGAGGGGGAATTACTGCCGAG
AGGGGAAAGGAGGGAGGGAGGGAGGGAGGAGTCCTCCATGGACCATACCC
TCCTTCTGCCATAAAGCTCTTCTCGCGACCTCCTTTTCCTCCTCCTCCAC
TGCCTGTTCGTGTTCTTCACCGTCGTCAACAGCAGCAGCAGCAGCAGCAG
CTTGATAAGAAAGAGGAGGAAGAGAAAGAGAAAGAGAAAGTGCTTTGCGC
TCAAATAGCTGAATTTGATGAAACGAAGAAGGAGGAAAAGAAGAAGAACG
AGGTATCGAAGGAGGGAGAGGCGGAGGCAGAGGCAGAGGAAGAGGAAGAA
GAGAGTCCTGATTTGCTTGCGGGGAGGAAACATTTCTCTTATCAACACCG
AGATGGGGATGAGGAGGAGGAGAAAGAAGAAGAACAGGAACCGAATGAAA
GGGTAGAGGGAAGGAATAGAATTCTACAGAAATGTGCATATGTGCGTTTG
TGTGAATGTGTGAGTGTGTGTTTGTTCCTCTGTGTGTGTGTGTGTGGCTC
TGTCGGGATGAGAAGAGGTAGAGGGAAGGAGGAATGTGCCATGAGAATGA
AAAGAAGGGAATACAATGAAATGAACAGATGCTGAGTGACATTTACATAA
ATCCTGTGTGTACATAAATTCTGTCTATATACATATGAGAAAAAGGAGGG
ATAAAAGGACGCCAAAACAGGCAATGAAAACGAGAGGGTGACGCAACAGC
AAAAAGCAGGCAAGGCG

protein sequence of jgi.p|Nanoce1779_2|200210

>mRNA_8034-protein ID=mRNA_8034-protein|Name=jgi.p|Nanoce1779_2|200210|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MLDSLLTLIKDVHEVKRQLQEQQEEQEQHNHHQAVPAKAFPPSPPPSPDR
HQQRQQQHQQHQQQQQQQKQRKEQEQHLTDMPARLSKLAAELSSVQEQQR
VAAATAAAAAAAAIEREQQVEEEVRILKVKVEGMANEFRLLRLARDGKEE
GGREGAVEGGGITAERGKEGGREGGVLHGPYPPSAIKLFSRPPFPPPPLP
VRVLHRRQQQQQQQQLDKKEEEEKEKEKVLCAQIAEFDETKKEEKKKNEV
SKEGEAEAEAEEEEEESPDLLAGRKHFSYQHRDGDEEEEKEEEQEPNERV
EGRNRILQKCAYVRLCECVSVCLFLCVCVCGSVGMRRGRGKEECAMRMKR
REYNEMNRC*

mRNA from alignment at scaffold_25:2967..5363+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8034 ID=mRNA_8034|Name=jgi.p|Nanoce1779_2|200210|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp|location=Sequence derived from alignment at scaffold_25:2967..5363+ (Nannochloropsis oceanica)
TCTTGTCTCTGCTGCTGCTGCTGCTCCTCCTCCTTACACATCTCTTATCA
TCGGCAATACACCTAGCCAACCTTCGCAACACTCCTATTCGCAGTCCCAG
CATACCCACCTCCAGCAGCAACAGCAGCAGCAGCGGCAGGAGGGTGGGAG
GGGAGGAAAGGAGGGAGGTGTGGATGACTTGGTAGCAGCAAAGACACAGC
AGCAAATGCTGGACTCACTACTCACACTTATTAAAGACGTGCATGAAGTC
AAGCGCCAGCTACAGGAGCAGCAGGAGGAGCAGGAGCAGCACAACCACCA
TCAGGCAGTCCCGGCGAAGGCCTTTCCCCCCTCTCCTCCACCGTCTCCAG
ATCGACACCAGCAGCGACAGCAGCAGCATCAGCAGCATCAGCAGCAGCAG
CAGCAGCAAAAACAGCGAAAAGAACAAGAGCAACATCTAACAGACATGCC
CGCCCGTCTCAGTAAACTCGCGGCAGAACTCTCCTCCGTCCAGGAGCAGC
AACGAGTGGCAGCGGCCACAGCTGCAGCAGCCGCAGCTGCTGCAATAGAG
AGGGAACAGCAGGTAGAGGAGGAGGTGAGGATTCTAAAGGTGAAGGTGGA
AGGTATGGCGAATGAATTCAGGCTGCTCCGATTGGCGAGGGACGGGAAAG
AGGAGGGAGGGAGGGAGGGAGCTGTGGAAGGAGGGGGAATTACTGCCGAG
AGGGGAAAGGAGGGAGGGAGGGAGGGAGGAGTCCTCCATGGACCATACCC
TCCTTCTGCCATAAAGCTCTTCTCGCGACCTCCTTTTCCTCCTCCTCCAC
TGCCTGTTCGTGTTCTTCACCGTCGTCAACAGCAGCAGCAGCAGCAGCAG
CTTGATAAGAAAGAGGAGGAAGAGAAAGAGAAAGAGAAAGTGCTTTGCGC
TCAAATAGCTGAATTTGATGAAACGAAGAAGGAGGAAAAGAAGAAGAACG
AGGTATCGAAGGAGGGAGAGGCGGAGGCAGAGGCAGAGGAAGAGGAAGAA
GAGAGTCCTGATTTGCTTGCGGGGAGGAAACATTTCTCTTATCAACACCG
AGATGGGGATGAGGAGGAGGAGAAAGAAGAAGAACAGGAACCGAATGAAA
GGGTAGAGGGAAGGAATGAAAAGGAGACGAGGGTGGTGGTGCAGGGCGAG
GAAGAGGAAGAGGAAATGGAGGAGACGATGACTGGGATTGAGGTGGTGGT
GGATGCACACTTGGCTGCTGCTGCTATTGCTACCGAAAACAAAAACCAGC
ATGAGAAGGAGGATGAGGAGGAGGTGAGAAATCAAGGGAGGATTCTGAAT
GTGCATTTGGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGAAGCAGCAGAAGCAGCAGATGCGATGGTAGAGGATAAGGAGGATC
AGAAGCAGCAGAAGCAGCAGAAGCAGCAGCTGGATGTTGCCCCTCCCCCT
CGTCCTCCCTCTCTTCCTCCCACCCCTCCTCCTCGCCGTTCCTATGGCCT
GGCTACGGCAGCAACGCCAATTCCCGCTGCTGCTTCGCCTAGTGCCGCCA
TGTCCTATTTTGCTTCCTCCCCCGACGGCACCATCTCCATTGCACAATAC
CTCCTGCAGAAAAGCGGAGAGCGGGAGGGAGGGGGTAGTGGAAGAAGAGG
GACACAGCAAAGGCATTGTGGCGATGTGATGCGAGGACAGCGCGCGAGGA
AGGTTGAAAAGGTAGTAGAGAAGCGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGAAGCGGCGGGGACTCAGTCTGCGGCAGC
TCCAGAATGGTAGAGGTCAGAGGGAAGAGCGAAGAGGGAGAGAGGAAGGG
AGGGAGAGAAGAGAGGATGCATTTGATTTTGCAGTACAGGAAGGGAAGAA
GCTGACGATGGTATTTGTGCGAGAGGGAGAAGGGGGAGGGGGAAAGGGGA
GGGGGAGGGATGGAGGGAGGGAGTGGTGTGGGGCGGACGAAGAGGGAGAG
AGGGAAGGAGGGGGGGGGATATGTCTGTAAGAAGAGGGGGAAGACATAGA
ATTCTACAGAAATGTGCATATGTGCGTTTGTGTGAATGTGTGAGTGTGTG
TTTGTTCCTCTGTGTGTGTGTGTGTGGCTCTGTCGGGATGAGAAGAGGTA
GAGGGAAGGAGGAATGTGCCATGAGAATGAAAAGAAGGGAATACAATGAA
ATGAACAGATGCTGAGTGACATTTACATAAATCCTGTGTGTACATAAATT
CTGTCTATATACATATGAGAAAAAGGAGGGATAAAAGGACGCCAAAACAG
GCAATGAAAACGAGAGGGTGACGCAACAGCAAAAAGCAGGCAAGGCG

Coding sequence (CDS) from alignment at scaffold_25:2967..5363+

>mRNA_8034 ID=mRNA_8034|Name=jgi.p|Nanoce1779_2|200210|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_25:2967..5363+ (Nannochloropsis oceanica)
ATGCTGGACTCACTACTCACACTTATTAAAGACGTGCATGAAGTCAAGCG
CCAGCTACAGGAGCAGCAGGAGGAGCAGGAGCAGCACAACCACCATCAGG
CAGTCCCGGCGAAGGCCTTTCCCCCCTCTCCTCCACCGTCTCCAGATCGA
CACCAGCAGCGACAGCAGCAGCATCAGCAGCATCAGCAGCAGCAGCAGCA
GCAAAAACAGCGAAAAGAACAAGAGCAACATCTAACAGACATGCCCGCCC
GTCTCAGTAAACTCGCGGCAGAACTCTCCTCCGTCCAGGAGCAGCAACGA
GTGGCAGCGGCCACAGCTGCAGCAGCCGCAGCTGCTGCAATAGAGAGGGA
ACAGCAGGTAGAGGAGGAGGTGAGGATTCTAAAGGTGAAGGTGGAAGGTA
TGGCGAATGAATTCAGGCTGCTCCGATTGGCGAGGGACGGGAAAGAGGAG
GGAGGGAGGGAGGGAGCTGTGGAAGGAGGGGGAATTACTGCCGAGAGGGG
AAAGGAGGGAGGGAGGGAGGGAGGAGTCCTCCATGGACCATACCCTCCTT
CTGCCATAAAGCTCTTCTCGCGACCTCCTTTTCCTCCTCCTCCACTGCCT
GTTCGTGTTCTTCACCGTCGTCAACAGCAGCAGCAGCAGCAGCAGCTTGA
TAAGAAAGAGGAGGAAGAGAAAGAGAAAGAGAAAGTGCTTTGCGCTCAAA
TAGCTGAATTTGATGAAACGAAGAAGGAGGAAAAGAAGAAGAACGAGGTA
TCGAAGGAGGGAGAGGCGGAGGCAGAGGCAGAGGAAGAGGAAGAAGAGAG
TCCTGATTTGCTTGCGGGGAGGAAACATTTCTCTTATCAACACCGAGATG
GGGATGAGGAGGAGGAGAAAGAAGAAGAACAGGAACCGAATGAAAGGGTA
GAGGGAAGGAATAGAATTCTACAGAAATGTGCATATGTGCGTTTGTGTGA
ATGTGTGAGTGTGTGTTTGTTCCTCTGTGTGTGTGTGTGTGGCTCTGTCG
GGATGAGAAGAGGTAGAGGGAAGGAGGAATGTGCCATGAGAATGAAAAGA
AGGGAATACAATGAAATGAACAGATGCTGAATGCTGGACTCACTACTCAC
ACTTATTAAAGACGTGCATGAAGTCAAGCGCCAGCTACAGGAGCAGCAGG
AGGAGCAGGAGCAGCACAACCACCATCAGGCAGTCCCGGCGAAGGCCTTT
CCCCCCTCTCCTCCACCGTCTCCAGATCGACACCAGCAGCGACAGCAGCA
GCATCAGCAGCATCAGCAGCAGCAGCAGCAGCAAAAACAGCGAAAAGAAC
AAGAGCAACATCTAACAGACATGCCCGCCCGTCTCAGTAAACTCGCGGCA
GAACTCTCCTCCGTCCAGGAGCAGCAACGAGTGGCAGCGGCCACAGCTGC
AGCAGCCGCAGCTGCTGCAATAGAGAGGGAACAGCAGGTAGAGGAGGAGG
TGAGGATTCTAAAGGTGAAGGTGGAAGGTATGGCGAATGAATTCAGGCTG
CTCCGATTGGCGAGGGACGGGAAAGAGGAGGGAGGGAGGGAGGGAGCTGT
GGAAGGAGGGGGAATTACTGCCGAGAGGGGAAAGGAGGGAGGGAGGGAGG
GAGGAGTCCTCCATGGACCATACCCTCCTTCTGCCATAAAGCTCTTCTCG
CGACCTCCTTTTCCTCCTCCTCCACTGCCTGTTCGTGTTCTTCACCGTCG
TCAACAGCAGCAGCAGCAGCAGCAGCTTGATAAGAAAGAGGAGGAAGAGA
AAGAGAAAGAGAAAGTGCTTTGCGCTCAAATAGCTGAATTTGATGAAACG
AAGAAGGAGGAAAAGAAGAAGAACGAGGTATCGAAGGAGGGAGAGGCGGA
GGCAGAGGCAGAGGAAGAGGAAGAAGAGAGTCCTGATTTGCTTGCGGGGA
GGAAACATTTCTCTTATCAACACCGAGATGGGGATGAGGAGGAGGAGAAA
GAAGAAGAACAGGAACCGAATGAAAGGGTAGAGGGAAGGAATAGAATTCT
ACAGAAATGTGCATATGTGCGTTTGTGTGAATGTGTGAGTGTGTGTTTGT
TCCTCTGTGTGTGTGTGTGTGGCTCTGTCGGGATGAGAAGAGGTAGAGGG
AAGGAGGAATGTGCCATGAGAATGAAAAGAAGGGAATACAATGAAATGAA
CAGATGCTGA

Synonyms

Publications