jgi.p|Nanoce1779_2|200209, mRNA_8033 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|200209
Unique NamemRNA_8033
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length763
Alignment locationscaffold_25:2074..2966 +

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Properties
Property NameValue
TranscriptId200295
TrackFilteredModels2
ProteinId200209
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:2074..2966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200209gene_8033Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200209mRNA_8033-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8033CDS_8033Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8033 ID=mRNA_8033|Name=jgi.p|Nanoce1779_2|200209|organism=Nannochloropsis oceanica|type=mRNA|length=763bp
TGAGACTGAGTGATGCGGGCGGTAGCATGATGATTGTACGCAAGTAACAC
TAGATGTTGAGTCTTCCTCCCGCTCCTCTTCCTCCTTCTCGGCCCCCTCG
TCGACCTCCTCCTCGTCCTCTTGCTCAACATTTCCAGACAAGGACGACAA
AACAGAAAAGCTTCAGAAAAGCTTCAACACGCCAATCTCTACATCACGTC
CATATTGATCATCTCCCTTTTCGGATCGCTGTTGTAGCTCGCTTGTCTCT
TTGGTTTCGAGCGGACAGCTTGTTTTACCCTCCCAGCCAACCTCCTCAAT
CCTCCCTCTCTCCCTCCCTCTCACCGCAGTCACTCACACAAACTATCCCC
GTACATCAATGTACAGGCCGCAGAGGTTGTTGGCCTCCTGTGCCCTCCCT
CCAGTACTTCCGCCTCTCTTTTCTTCTCCGTCATGCAGTATCGCTACTCC
TCTTCCTACTCCTCCGCGTACCGTGGCTCCTCGTCCTCCTCGTCCCGCAT
ACCTGCTCCTGCCCATCGCGCCAACGCAAGCAGCAGCAGCAGCGTCTCCC
TGGATAGTATCCTGCGCAGGAAAAGCAATCACAGCGCTCACTTTACGATC
ACTTTCAACAACAACAACAACTACATCGTCAATGGTCTACCGCCGATTTC
CCAGCGCCAGCTGCACCCCGTCCTCCTCCATCTCATCCACCACCGTACTA
CTCGAATGAAGGAGGAGGAGGAGGAGGTGGAGGAAGAGGAGGAGGTGGGG
GAGACTGGACTGG
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protein sequence of jgi.p|Nanoce1779_2|200209

>mRNA_8033-protein ID=mRNA_8033-protein|Name=jgi.p|Nanoce1779_2|200209|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MLSLPPAPLPPSRPPRRPPPRPLAQHFQTRTTKQKSFRKASTRQSLHHVH
IDHLPFRIAVVARLSLWFRADSLFYPPSQPPQSSLSPSLSPQSLTQTIPV
HQCTGRRGCWPPVPSLQYFRLSFLLRHAVSLLLFLLLRVPWLLVLLVPHT
CSCPSRQRKQQQQRLPG*
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mRNA from alignment at scaffold_25:2074..2966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8033 ID=mRNA_8033|Name=jgi.p|Nanoce1779_2|200209|organism=Nannochloropsis oceanica|type=mRNA|length=893bp|location=Sequence derived from alignment at scaffold_25:2074..2966+ (Nannochloropsis oceanica)
TGAGACTGAGTGATGCGGGCGGTAGCATGATGATTGTACGCAAGTAACAC
TAGATGTTGAGTCTTCCTCCCGCTCCTCTTCCTCCTTCTCGGCCCCCTCG
TCGACCTCCTCCTCGTCCTCTTGCTCAACATTTCCAGACAAGGACGACAA
AACAGAAAAGCTTCAGAAAAGCTTCAACACGCCAATCTCTACATCACGTC
CATATTGATCATCTCCCTTTTCGGATCGCTGTTGTAGCTCGCTTGTCTCT
TTGGTTTCGAGCGGACAGCTTGTTTTACCCTCCCAGCCAACCTCCTCAAT
CCTCCCTCTCTCCCTCCCTCTCACCGCAGTCACTCACACAAACTATCCCC
GTACATCAATGTACAGGCCGCAGAGGTTGTTGGCCTCCTGTGCCCTCCCT
CCAGTACTTCCGCCTCTCTTTTCTTCTCCGTCATGCAGTATCGCTACTCC
TCTTCCTACTCCTCCGCGTACCGTGGCTCCTCGTCCTCCTCGTCCCGCAT
ACCTGCTCCTGCCCATCGCGCCAACGCAAGCAGCAGCAGCAGCGTCTCCC
TGGATAGTATCCTGCGGTATAGTTGCACAGCGACGGGGGGGGGCAGAGGC
AGCAGCAGTAATATTAGCAACAACAGCAGCAATAATAATAACAACGGCCG
GGTGAGAGGCCTCCCTCTCCCTCACTCCCCCTACAACCGACAACAGCAGG
AAAAGCAATCACAGCGCTCACTTTACGATCACTTTCAACAACAACAACAA
CTACATCGTCAATGGTCTACCGCCGATTTCCCAGCGCCAGCTGCACCCCG
TCCTCCTCCATCTCATCCACCACCGTACTACTCGAATGAAGGAGGAGGAG
GAGGAGGTGGAGGAAGAGGAGGAGGTGGGGGAGACTGGACTGG
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Coding sequence (CDS) from alignment at scaffold_25:2074..2966+

>mRNA_8033 ID=mRNA_8033|Name=jgi.p|Nanoce1779_2|200209|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_25:2074..2966+ (Nannochloropsis oceanica)
ATGTTGAGTCTTCCTCCCGCTCCTCTTCCTCCTTCTCGGCCCCCTCGTCG
ACCTCCTCCTCGTCCTCTTGCTCAACATTTCCAGACAAGGACGACAAAAC
AGAAAAGCTTCAGAAAAGCTTCAACACGCCAATCTCTACATCACGTCCAT
ATTGATCATCTCCCTTTTCGGATCGCTGTTGTAGCTCGCTTGTCTCTTTG
GTTTCGAGCGGACAGCTTGTTTTACCCTCCCAGCCAACCTCCTCAATCCT
CCCTCTCTCCCTCCCTCTCACCGCAGTCACTCACACAAACTATCCCCGTA
CATCAATGTACAGGCCGCAGAGGTTGTTGGCCTCCTGTGCCCTCCCTCCA
GTACTTCCGCCTCTCTTTTCTTCTCCGTCATGCAGTATCGCTACTCCTCT
TCCTACTCCTCCGCGTACCGTGGCTCCTCGTCCTCCTCGTCCCGCATACC
TGCTCCTGCCCATCGCGCCAACGCAAGCAGCAGCAGCAGCGTCTCCCTGG
ATAG
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Synonyms
Publications