jgi.p|Nanoce1779_2|601049, mRNA_8031 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601049
Unique NamemRNA_8031
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length682
Alignment locationscaffold_22:511422..512265 -

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Properties
Property NameValue
TranscriptId601135
TrackFilteredModels2
ProteinId601049
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:511422..512265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601049gene_8031Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601049mRNA_8031-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8031CDS_8031Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8031 ID=mRNA_8031|Name=jgi.p|Nanoce1779_2|601049|organism=Nannochloropsis oceanica|type=mRNA|length=682bp
CTGTCCTTTGCGCGCCATGTTTGAACGTTTACTGACTTAGCTGCCATTGA
GAGTCTCCCACATGTCTCGTTTCTTTTGGTTCCCTCTTTTTCCCTTTCCT
TCAAGTCTCACACACCGAGCTCCCTTCGACATCCTCGGTATGTCTCTACT
TGAATTTCCTCTCTTCCCTCAAAAGGAAGCTTCTATTATTATGAGTGGAC
ATCTTTCTACAGCCCTTGTAGCTTTTCCGTCAAGGTCTTTGTAATAGGGA
CAAGATCACCGGAATCGCCGCACGTGTACCATTGCACCTCTGTTAAATTC
GTTTACGAAAGGAAGGAAAAGGAGAAAATATGAGAAAAGGAATTAGAACA
CTAATTGCATAATCGGGTCAAATTTGATGCTTGGGGTGGTGATCACTCTG
TCGCTGAGGGCACCTTTCACCCTTCAGCTTCCTCCACCTTTTCTCCATGC
TCCCTTTTATTCCGCGGTACTTACTAGGGTAGTATTTCCCAAGAATATCC
TCGAGGACACGGGGGTCCCGGCAATCTTCAGGCTTGCGATTAGAGGCCGT
GCACTGCATACGTGCCGAGCCAAAGCTCTGATCGAGATTCTTGCTATGGG
TCGCCTTGGGGACCAACTGTCGATTCAGGATCGCCCAAAAATTCACCGCT
TGTCCCTTGAACGAGTTGGATAGGAAGACATC
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protein sequence of jgi.p|Nanoce1779_2|601049

>mRNA_8031-protein ID=mRNA_8031-protein|Name=jgi.p|Nanoce1779_2|601049|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MLGVVITLSLRAPFTLQLPPPFLHAPFYSAVLTRVVFPKNILEDTGVPAI
FRLAIRGRALHTCRAKALIEILAMGRLGDQLSIQDRPKIHRLSLERVG*
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mRNA from alignment at scaffold_22:511422..512265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8031 ID=mRNA_8031|Name=jgi.p|Nanoce1779_2|601049|organism=Nannochloropsis oceanica|type=mRNA|length=844bp|location=Sequence derived from alignment at scaffold_22:511422..512265- (Nannochloropsis oceanica)
CTGTCCTTTGCGCGCCATGTTTGAACGTTTACTGACTTAGCTGCCATTGA
GAGTCTCCCACATGTCTCGTTTCTTTTGGTTCCCTCTTTTTCCCTTTCCT
TCAAGTCTCACACACCGAGCTCCCTTCGACATCCTCGGTATGTCTCTACT
TGAATTTCCTCTCTTCCCTCAAAAGGAAGCTTCTATTATTATGAGTGGAC
ATCTTTCTACAGCCCTTGTAGCTTTTCCGTCAAGGTCTTTGTAATAGGGA
CAAGATCACCGGAATCGCCGCACGTGTACCATTGCACCTCTGTTAAATTC
GTTTACGAAAGGAAGGAAAAGGAGAAAATATGAGAAAAGGAATTAGAACA
CTAATTGCATAATCGGGTCAAATTTGATGCTTGGGGTGGTGATCACTCTG
TCGCTGAGGGCACCTTTCACCCTTCAGCTTCCTCCACCTTTTCTCCATGC
TCCCTTTTATTCCGCGGTACTTACTAGGGTAGTATTTCCCAAGAATATCC
TCGAGGACACGGGGGTCCCGGCAATCTTCAGGCTTGCGATTAGAGGCCGT
GCACTGCATACGTGCCGAGCCAAAGCTCTGATCGAGATTCTTGCTATGGG
TCGCCTTGGGGACCAACTGTAAAGGGGAAAAAAAAACGAAAGGAAAGGCG
TGAGTATCGCACATTGATCACGTCTCCGATGCAAGCGATATGTGTATTTC
AGCAAAAAAAATGTGGTGCAATACAGTCTCCCAAATGAAAGGAAGACAAC
TGACAGGAAGAAAAAAGGATTCGCGCACCTGTCGATTCAGGATCGCCCAA
AAATTCACCGCTTGTCCCTTGAACGAGTTGGATAGGAAGACATC
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Coding sequence (CDS) from alignment at scaffold_22:511422..512265-

>mRNA_8031 ID=mRNA_8031|Name=jgi.p|Nanoce1779_2|601049|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_22:511422..512265- (Nannochloropsis oceanica)
CTGTCGATTCAGGATCGCCCAAAAATTCACCGCTTGTCCCTTGAACGAGT
TGGATAGATGCTTGGGGTGGTGATCACTCTGTCGCTGAGGGCACCTTTCA
CCCTTCAGCTTCCTCCACCTTTTCTCCATGCTCCCTTTTATTCCGCGGTA
CTTACTAGGGTAGTATTTCCCAAGAATATCCTCGAGGACACGGGGGTCCC
GGCAATCTTCAGGCTTGCGATTAGAGGCCGTGCACTGCATACGTGCCGAG
CCAAAGCTCTGATCGAGATTCTTGCTATGGGTCGCCTTGGGGACCAACTG
TCGATTCAGGATCGCCCAAAAATTCACCGCTTGTCCCTTGAACGAGTTGG
ATAGATGCTTGGGGTGGTGATCACTCTGTCGCTGAGGGCACCTTTCACCC
TTCAGCTTCCTCCACCTTTTCTCCATGCTCCCTTTTATTCCGCGGTACTT
ACTAGGGTAGTATTTCCCAAGAATATCCTCGAGGACACGGGGGTCCCGGC
AATCTTCAGGCTTGCGATTAGAGGCCGTGCACTGCATACGTGCCGAGCCA
AAGCTCTGATCGAGATTCTTGCTATGGGTCGCCTTGGGGACCAA
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Synonyms
Publications