jgi.p|Nanoce1779_2|574194, mRNA_803 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574194
Unique NamemRNA_803
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1197
Alignment locationscaffold_2:467606..468941 -

Link to JBrowse

Properties
Property NameValue
TranscriptId574280
TrackFilteredModels2
ProteinId574194
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:467606..468941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574194gene_803Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574194mRNA_803-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_803CDS_803Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_803 ID=mRNA_803|Name=jgi.p|Nanoce1779_2|574194|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
AGGACAAGCACAAGGACAAGCACAAGGGCCGCCGGCTTGTTGTGTCCGGG
CGAGCGCGTCGAGAGTAAAACATCCACCACTTATGAGCATGACGAATCCA
TCCTTGGTCATCCTCTTCCTAGCCCTCAGTAGCACCACCATGACGGCTGC
AGTCCGAGAAGAATCAACAGCAGCGGCACCGCCTGGCAGCTTTCGACTTC
TCAACCGCGTTGACATGCCGCTAGTGGGATTTGGCACTGCAGGGTTGGGA
GATCTCCAAGAATCAGCTCCACTCTACGCCCTCATGTTGGGGTTCCGACA
CATCGATACTGCCCAAGCTACTGAATGGTACAACGAGGCAGCCATCTCCA
AAAGCATCGCAGCCTCCATGCTTCCACGAAAAGATATCTTCCTCGTCACC
AAGGTTCACCCACGCAATTTTGGGTACGAGCAAACACTCATCTCTTTCGA
AGATCCTGATACCGTAATGACTTCCCTTGGGCAGCTCCGCACGGATTACG
TCGACCTCTTGCTCCTTCACACCTCTGATTGCTCAGACTGGACCGGTCTC
TGTCAGCCTGACCCAGAACGTGGCACATTTTTTGACGCCTGGCGGGCATT
GGAAAAGCTTTACGAATTGGAAAAGGTCCGCGCGATTGGCGTGTCTAATT
TTAATGTTAGCCAGCTGGAGGCTTTGTCGGCAACAGCAAGAGTGCCCGTG
CATGTGGTGCAGAATCATATGGACCCTCTCCGACAGGACAGGGAGGTGCG
TGCTTGGTGTAAGGCTCGTGGGGTGTTGTACACGAGTTACTCGACTCTAG
GGTCTCAATGGCAGCACCAGTCTTCTGCTCAAGGAGAAAGAAAAGGAGGA
AAGAACCCTGTCCTGTCTCACCCAGTGGTCCAACGGCTGGCGAAACGGCA
CAATATTAGCGCGGCCTTGCTGGTCCTGACCTGGGCATTACAGGAGGGAG
TAGCGGTCATTCCCCGCTCGACACAAGTGGAGCATATAGAAGAGTTGGCC
CGTTTGTTGCCTAAGCATGAAGGAGGGCTGGGGGTAGTGTTGAGTGAGGG
GGAGATGGAGGAGATGCGGGGGCTGGATGGGGAGGAGCCCTGGAAGGTGC
AGACGGACGAATTATAGTCTTACGTTAAGTGTGGAAATGTATTTTTGGCA
GTAGCGTATGAAAAGGGAGGGGTGAGAAAGAAAACGTAGATGTGTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|574194

>mRNA_803-protein ID=mRNA_803-protein|Name=jgi.p|Nanoce1779_2|574194|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MSMTNPSLVILFLALSSTTMTAAVREESTAAAPPGSFRLLNRVDMPLVGF
GTAGLGDLQESAPLYALMLGFRHIDTAQATEWYNEAAISKSIAASMLPRK
DIFLVTKVHPRNFGYEQTLISFEDPDTVMTSLGQLRTDYVDLLLLHTSDC
SDWTGLCQPDPERGTFFDAWRALEKLYELEKVRAIGVSNFNVSQLEALSA
TARVPVHVVQNHMDPLRQDREVRAWCKARGVLYTSYSTLGSQWQHQSSAQ
GERKGGKNPVLSHPVVQRLAKRHNISAALLVLTWALQEGVAVIPRSTQVE
HIEELARLLPKHEGGLGVVLSEGEMEEMRGLDGEEPWKVQTDEL*
back to top

mRNA from alignment at scaffold_2:467606..468941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_803 ID=mRNA_803|Name=jgi.p|Nanoce1779_2|574194|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp|location=Sequence derived from alignment at scaffold_2:467606..468941- (Nannochloropsis oceanica)
AGGACAAGCACAAGGACAAGCACAAGGGCCGCCGGCTTGTTGTGTCCGGG
CGAGCGCGTCGAGAGTAAAACATCCACCACTTATGAGCATGACGAATCCA
TCCTTGGTCATCCTCTTCCTAGCCCTCAGTAGCACCACCATGACGGCTGC
AGTCCGAGAAGAATCAACAGCAGCGGCACCGCCTGGCAGCTTTCGACTTC
TCAACCGCGTTGACATGCCGCTAGTGGGATTTGGCACTGCAGGGTTGGGA
GATCTCCAAGAATCAGCTCCACTCTACGCCCTCATGTTGGGGTTCCGAGT
AAGTTTGCAGTGAATGAGGGGGAAGGGGCGAGGGAGGGAGGATGGAGGAC
ATGAAATGAAGCTTGAGAAATTAAGGGCATATCTTTGACTATCCTCATCC
TCCCTTCTTCTCCTTTCCGCCTACTCCCTGAACACAGCACATCGATACTG
CCCAAGCTACTGAATGGTACAACGAGGCAGCCATCTCCAAAAGCATCGCA
GCCTCCATGCTTCCACGAAAAGATATCTTCCTCGTCACCAAGGTTCACCC
ACGCAATTTTGGGTACGAGCAAACACTCATCTCTTTCGAAGATCCTGATA
CCGTAATGACTTCCCTTGGGCAGCTCCGCACGGATTACGTCGACCTCTTG
CTCCTTCACACCTCTGATTGCTCAGACTGGACCGGTCTCTGTCAGCCTGA
CCCAGAACGTGGCACATTTTTTGACGCCTGGCGGGCATTGGAAAAGCTTT
ACGAATTGGAAAAGGTCCGCGCGATTGGCGTGTCTAATTTTAATGTTAGC
CAGCTGGAGGCTTTGTCGGCAACAGCAAGAGTGCCCGTGCATGTGGTGCA
GAATCATATGGACCCTCTCCGACAGGACAGGGAGGTGCGTGCTTGGTGTA
AGGCTCGTGGGGTGTTGTACACGAGTTACTCGACTCTAGGGTCTCAATGG
CAGCACCAGTCTTCTGCTCAAGGAGAAAGAAAAGGAGGAAAGAACCCTGT
CCTGTCTCACCCAGTGGTCCAACGGCTGGCGAAACGGCACAATATTAGCG
CGGCCTTGCTGGTCCTGACCTGGGCATTACAGGAGGGAGTAGCGGTCATT
CCCCGCTCGACACAAGTGGAGCATATAGAAGAGTTGGCCCGTTTGTTGCC
TAAGCATGAAGGAGGGCTGGGGGTAGTGTTGAGTGAGGGGGAGATGGAGG
AGATGCGGGGGCTGGATGGGGAGGAGCCCTGGAAGGTGCAGACGGACGAA
TTATAGTCTTACGTTAAGTGTGGAAATGTATTTTTGGCAGTAGCGTATGA
AAAGGGAGGGGTGAGAAAGAAAACGTAGATGTGTGG
back to top

Coding sequence (CDS) from alignment at scaffold_2:467606..468941-

>mRNA_803 ID=mRNA_803|Name=jgi.p|Nanoce1779_2|574194|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_2:467606..468941- (Nannochloropsis oceanica)
CACATCGATACTGCCCAAGCTACTGAATGGTACAACGAGGCAGCCATCTC
CAAAAGCATCGCAGCCTCCATGCTTCCACGAAAAGATATCTTCCTCGTCA
CCAAGGTTCACCCACGCAATTTTGGGTACGAGCAAACACTCATCTCTTTC
GAAGATCCTGATACCGTAATGACTTCCCTTGGGCAGCTCCGCACGGATTA
CGTCGACCTCTTGCTCCTTCACACCTCTGATTGCTCAGACTGGACCGGTC
TCTGTCAGCCTGACCCAGAACGTGGCACATTTTTTGACGCCTGGCGGGCA
TTGGAAAAGCTTTACGAATTGGAAAAGGTCCGCGCGATTGGCGTGTCTAA
TTTTAATGTTAGCCAGCTGGAGGCTTTGTCGGCAACAGCAAGAGTGCCCG
TGCATGTGGTGCAGAATCATATGGACCCTCTCCGACAGGACAGGGAGGTG
CGTGCTTGGTGTAAGGCTCGTGGGGTGTTGTACACGAGTTACTCGACTCT
AGGGTCTCAATGGCAGCACCAGTCTTCTGCTCAAGGAGAAAGAAAAGGAG
GAAAGAACCCTGTCCTGTCTCACCCAGTGGTCCAACGGCTGGCGAAACGG
CACAATATTAGCGCGGCCTTGCTGGTCCTGACCTGGGCATTACAGGAGGG
AGTAGCGGTCATTCCCCGCTCGACACAAGTGGAGCATATAGAAGAGTTGG
CCCGTTTGTTGCCTAAGCATGAAGGAGGGCTGGGGGTAGTGTTGAGTGAG
GGGGAGATGGAGGAGATGCGGGGGCTGGATGGGGAGGAGCCCTGGAAGGT
GCAGACGGACGAATTATAGATGAGCATGACGAATCCATCCTTGGTCATCC
TCTTCCTAGCCCTCAGTAGCACCACCATGACGGCTGCAGTCCGAGAAGAA
TCAACAGCAGCGGCACCGCCTGGCAGCTTTCGACTTCTCAACCGCGTTGA
CATGCCGCTAGTGGGATTTGGCACTGCAGGGTTGGGAGATCTCCAAGAAT
CAGCTCCACTCTACGCCCTCATGTTGGGGTTCCGACACATCGATACTGCC
CAAGCTACTGAATGGTACAACGAGGCAGCCATCTCCAAAAGCATCGCAGC
CTCCATGCTTCCACGAAAAGATATCTTCCTCGTCACCAAGGTTCACCCAC
GCAATTTTGGGTACGAGCAAACACTCATCTCTTTCGAAGATCCTGATACC
GTAATGACTTCCCTTGGGCAGCTCCGCACGGATTACGTCGACCTCTTGCT
CCTTCACACCTCTGATTGCTCAGACTGGACCGGTCTCTGTCAGCCTGACC
CAGAACGTGGCACATTTTTTGACGCCTGGCGGGCATTGGAAAAGCTTTAC
GAATTGGAAAAGGTCCGCGCGATTGGCGTGTCTAATTTTAATGTTAGCCA
GCTGGAGGCTTTGTCGGCAACAGCAAGAGTGCCCGTGCATGTGGTGCAGA
ATCATATGGACCCTCTCCGACAGGACAGGGAGGTGCGTGCTTGGTGTAAG
GCTCGTGGGGTGTTGTACACGAGTTACTCGACTCTAGGGTCTCAATGGCA
GCACCAGTCTTCTGCTCAAGGAGAAAGAAAAGGAGGAAAGAACCCTGTCC
TGTCTCACCCAGTGGTCCAACGGCTGGCGAAACGGCACAATATTAGCGCG
GCCTTGCTGGTCCTGACCTGGGCATTACAGGAGGGAGTAGCGGTCATTCC
CCGCTCGACACAAGTGGAGCATATAGAAGAGTTGGCCCGTTTGTTGCCTA
AGCATGAAGGAGGGCTGGGGGTAGTGTTGAGTGAGGGGGAGATGGAGGAG
ATGCGGGGGCTGGATGGGGAGGAGCCCTGGAAGGTGCAGACGGACGAATT
ATAGATGAGCATGACGAATCCATCCTTGGTCATCCTCTTCCTAGCCCTCA
GTAGCACCACCATGACGGCTGCAGTCCGAGAAGAATCAACAGCAGCGGCA
CCGCCTGGCAGCTTTCGACTTCTCAACCGCGTTGACATGCCGCTAGTGGG
ATTTGGCACTGCAGGGTTGGGAGATCTCCAAGAATCAGCTCCACTCTACG
CCCTCATGTTGGGGTTCCGA
back to top
Synonyms
Publications