jgi.p|Nanoce1779_2|601023, mRNA_8029 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601023
Unique Name	mRNA_8029
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1551
Alignment location	scaffold_22:504105..506159 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601109
Track	FilteredModels2
ProteinId	601023

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:504105..506159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601023	gene_8029	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601023	mRNA_8029-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8029	CDS_8029	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:504105..506159+
coding sequence from alignment at scaffold_22:504105..506159+

mRNA sequence

>mRNA_8029 ID=mRNA_8029|Name=jgi.p|Nanoce1779_2|601023|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
AATTATAGGCATAGTTGGATTAAAATTATAAGGTGGATGTGGGGTAGGTG
TGTTTATGGAATTTGATGACAAGATTGTGCGGACACTTGAGAGTCTCGTC
GAGCGTTGAGATGAGTTTGAGCTGTCAGTTGGACATATATTTGATTCGAG
CGCGCCGGTGGAGAAATTTTCCTTTCCCCGCCAAGCAGCACTGAAAACTA
CCCACCATACCCTTGCTTCCCCTCTAAAGATACAATACAGACCTCTTCAT
CCTATTTCCAAGCCACAGGATCACAGGGCGCTGCAGCGCGTGCAAATTGC
ATCCAACACTCATCCTATCGCCTCGTCATCATTAGCCAGCCACCTCTATT
ATGGAGCCACAGATGACTACCAAAAAGGCAGCCCTTTCGTTCACTGGGGG
AAAAGACTGCTTGTTGGCTCTATCAGAGGTCAATAACAAACTCGAGGTTG
AAGTCACGGTTCTTGTGACCTTCGGTCCACCCGAGGCCTTCCTAACTGAG
GAGGAAGATGTGGAAGGAGAAGGCACGAGTGAGGACAGCGAGATGAAAAT
GAAGGAAAGCAACCCTAAAGAGAAAAAGAGGAGGAAGAAAACTTTCCTTG
CGCATCCTCTGAGGGTCATTCAGATGCAGGCTCTTGCGATAGGGCTGCCA
CATGTGGTGATACCCATCGAAGGGCCAAATTACCTGGAGAGCTACGCGAA
CGCGCTACGTCTCCTCATGTTCACCCACGGGGTAACTCACCTCGTCACAG
GGGACATACTGGACGTTTGCAATCAATTTATGCAAAAAGCCGCTGATGAG
GCAGGTACCGTCCTCCTTCGACCTCTCTGGGAGCGACCACGACGAGAGCT
CCTCGCTTTGATGATGCCACACCCATCCAACCTTCATTCCTCTCTCCTTC
CCTCATCGTCCTCCTCTGGTTTTACCTTCCTCCTCTCATGCTGCAGCGTG
GACAAAATGGGGAGGGAGCGAGCGAGAGCCTATGTAGGGATCGAGGGGGA
AAGAGCGCTGGAAAAATTGATGAACCTTGCGATGGAAAATGAGGAGCGAC
GGGAAAGGAAGACGAGGAACGGAGAAAGGCAGGATCAGGGCAAGGCAGCG
GACGAGGAGGATGACAAGGAGATTGATGCGTGTGGGGAGGGAGGGGAGTA
CCATTCTATGGTGCTGGACATGCCTCTCTTTAGACATGGACGCCTGGCCT
TCAAGGACGGGGAAAAAAGGGCTCCTGTATTGTTGTCGGATGACAAAAAA
TACTTGTACTGTGACCTCGATGACTTGATCTTCGTGAAGAGAGAGTGAGA
GTGAGAGGTTGTTTGTAAAGTAGATAGTTGTTCGTGCTCTTTAAATTAAA
TTAGAAATGAGATAAGAAAATACTGAGAAAGAAGGGAGGATCGCTGGTGA
AGGAACGGAGGGGGAAATGGTGCGTGCGGCTAAGGTGGAGAGGATGTTTG
GCAAAGTCCCGCGATGGCGGAAGGACCAAGAATTCTCCAGCATTTTCCCT
TGCAAAGCCCTTGACATTTGTCGATAAAACAGATTCGAATCGCAAATGAT
A

protein sequence of jgi.p|Nanoce1779_2|601023

>mRNA_8029-protein ID=mRNA_8029-protein|Name=jgi.p|Nanoce1779_2|601023|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MEPQMTTKKAALSFTGGKDCLLALSEVNNKLEVEVTVLVTFGPPEAFLTE
EEDVEGEGTSEDSEMKMKESNPKEKKRRKKTFLAHPLRVIQMQALAIGLP
HVVIPIEGPNYLESYANALRLLMFTHGVTHLVTGDILDVCNQFMQKAADE
AGTVLLRPLWERPRRELLALMMPHPSNLHSSLLPSSSSSGFTFLLSCCSV
DKMGRERARAYVGIEGERALEKLMNLAMENEERRERKTRNGERQDQGKAA
DEEDDKEIDACGEGGEYHSMVLDMPLFRHGRLAFKDGEKRAPVLLSDDKK
YLYCDLDDLIFVKRE*

mRNA from alignment at scaffold_22:504105..506159+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8029 ID=mRNA_8029|Name=jgi.p|Nanoce1779_2|601023|organism=Nannochloropsis oceanica|type=mRNA|length=2055bp|location=Sequence derived from alignment at scaffold_22:504105..506159+ (Nannochloropsis oceanica)
AATTATAGGCATAGTTGGATTAAAATTATAAGGTGGATGTGGGGTAGGTG
TGTTTATGGAATTTGATGACAAGATTGTGCGGACACTTGAGAGTCTCGTC
GAGCGTTGAGATGAGTTTGAGCTGTCAGTTGGACATATATTTGATTCGAG
CGCGCCGGTGGAGAAATTTTCCTTTCCCCGCCAAGCAGCACTGAAAACTA
CCCACCATACCCTTGCTTCCCCTCTAAAGATACAATACAGACCTCTTCAT
CCTATTTCCAAGCCACAGGATCACAGGGCGCTGCAGCGCGTGCAAATTGC
ATCCAACACTCATCCTATCGCCTCGTCATCATTAGCCAGCCACCTCTATT
ATGGAGCCACAGATGACTACCAAAAAGGCAGCCCTTTCGTTCACTGGGGG
AAAAGACTGCTTGTTGGCTCTATCAGAGGTCAATAACAAACTCGAGGTTG
AAGTCACGGTTCTTGTGACCTTCGGTCCACCCGAGGCCTTCCTAACTGAG
GAGGAAGATGTGGAAGGAGAAGGCACGAGTGAGGACAGCGAGATGAAAAT
GAAGGAAAGCAACCCTAAAGAGAAAAAGAGGAGGAAGAAAACTTTCCTTG
CGCATCCTCTGAGGGTCATTCAGATGCAGGCTCTTGCGATAGGGCTGCCA
CATGTGGTGATACCCATCGAAGGGCCAAATTACCTGGAGAGCTACGCGGT
GAGCGAACGAGGGGAGAGAGGAAGGAATGACGATGTGATCAAATTTCACA
AATATATTCGTCTTAATTTCATCTCATCATGTCGTTATATAATAGTCTCA
TTCGAACAAGCATGACTTGTCTCACTTTTTTCCTCCCTCCCCTCCCTCCC
TCCTTTCTCCCAGAACGCGCTACGTCTCCTCATGTTCACCCACGGGGTAA
CTCACCTCGTCACAGGTAAGAAAATAGAAAGAGTGGAAGTGAAGAGGAAA
AGAGGAAGTGGAAAAGGAAAGCGTCAGTCATTCAACATTTATGAGGGCTC
CTCATGTTTTTAATTCATTTACCCAACTGTCCAGTTTTTCTTTCATTCAT
TTTCCGTTCAGGGGACATACTGGACGTTTGCAATCAATTTATGCAAAAAG
CCGCTGATGAGGCAGGTACCGTCCTCCTTCGACCTCTCTGGGAGCGACCA
CGACGAGAGCTCCTCGCTTTGATGATGCCACACCCATCCAACCTTCATTC
CTCTCTCCTTCCCTCATCGTCCTCCTCTGGTTTTACCTTCCTCCTCTCAT
GCTGCAGCGTGGACAAAATGGGGAGGGAGCGAGCGAGAGCCTATGTAGGG
ATCGAGGGGGAAAGAGCGCTGGAAAAATTGATGAACCTTGCGATGGAAAA
TGAGGAGCGACGGGAAAGGAAGACGAGGAACGGAGAAAGGCAGGATCAGG
GCAAGGCAGCGGACGAGGAGGATGACAAGGAGATTGATGCGTGTGGGGAG
GGAGGGGAGTACCATTCTATGGTGAGTAAAAATGGAGGGGGTGAGGGGGT
GGGAAGGGAACAAAGATAAGAGAAGGACGGCAAGAAGAGAGAGAGAGAGG
GTTGTGAAGGGTACCGAAGTAAGAATGCATGTAGTTTGATATTGGACCCG
AACCACTCGTTATTTCTTATCCACACTATCGGAATCTCTCACGACGTCAC
CGACAAAATAACAGGTGCTGGACATGCCTCTCTTTAGACATGGACGCCTG
GCCTTCAAGGACGGGGAAAAAAGGGCTCCTGTATTGTTGTCGGATGACAA
AAAATACTTGTACTGTGACCTCGATGACTTGATCTTCGTGAAGAGAGAGT
GAGAGTGAGAGGTTGTTTGTAAAGTAGATAGTTGTTCGTGCTCTTTAAAT
TAAATTAGAAATGAGATAAGAAAATACTGAGAAAGAAGGGAGGATCGCTG
GTGAAGGAACGGAGGGGGAAATGGTGCGTGCGGCTAAGGTGGAGAGGATG
TTTGGCAAAGTCCCGCGATGGCGGAAGGACCAAGAATTCTCCAGCATTTT
CCCTTGCAAAGCCCTTGACATTTGTCGATAAAACAGATTCGAATCGCAAA
TGATA

Coding sequence (CDS) from alignment at scaffold_22:504105..506159+

>mRNA_8029 ID=mRNA_8029|Name=jgi.p|Nanoce1779_2|601023|organism=Nannochloropsis oceanica|type=CDS|length=3792bp|location=Sequence derived from alignment at scaffold_22:504105..506159+ (Nannochloropsis oceanica)
ATGGAGCCACAGATGACTACCAAAAAGGCAGCCCTTTCGTTCACTGGGGG
AAAAGACTGCTTGTTGGCTCTATCAGAGGTCAATAACAAACTCGAGGTTG
AAGTCACGGTTCTTGTGACCTTCGGTCCACCCGAGGCCTTCCTAACTGAG
GAGGAAGATGTGGAAGGAGAAGGCACGAGTGAGGACAGCGAGATGAAAAT
GAAGGAAAGCAACCCTAAAGAGAAAAAGAGGAGGAAGAAAACTTTCCTTG
CGCATCCTCTGAGGGTCATTCAGATGCAGGCTCTTGCGATAGGGCTGCCA
CATGTGGTGATACCCATCGAAGGGCCAAATTACCTGGAGAGCTACGCGAA
CGCGCTACGTCTCCTCATGTTCACCCACGGGGTAACTCACCTCGTCACAG
GGGACATACTGGACGTTTGCAATCAATTTATGCAAAAAGCCGCTGATGAG
GCAGGTACCGTCCTCCTTCGACCTCTCTGGGAGCGACCACGACGAGAGCT
CCTCGCTTTGATGATGCCACACCCATCCAACCTTCATTCCTCTCTCCTTC
CCTCATCGTCCTCCTCTGGTTTTACCTTCCTCCTCTCATGCTGCAGCGTG
GACAAAATGGGGAGGGAGCGAGCGAGAGCCTATGTAGGGATCGAGGGGGA
AAGAGCGCTGGAAAAATTGATGAACCTTGCGATGGAAAATGAGGAGCGAC
GGGAAAGGAAGACGAGGAACGGAGAAAGGCAGGATCAGGGCAAGGCAGCG
GACGAGGAGGATGACAAGGAGATTGATGCGTGTGGGGAGGGAGGGGAGTA
CCATTCTATGGTGCTGGACATGCCTCTCTTTAGACATGGACGCCTGGCCT
TCAAGGACGGGGAAAAAAGGGCTCCTGTATTGTTGTCGGATGACAAAAAA
TACTTGTACTGTGACCTCGATGACTTGATCTTCGTGAAGAGAGAGTGAAT
GGAGCCACAGATGACTACCAAAAAGGCAGCCCTTTCGTTCACTGGGGGAA
AAGACTGCTTGTTGGCTCTATCAGAGGTCAATAACAAACTCGAGGTTGAA
GTCACGGTTCTTGTGACCTTCGGTCCACCCGAGGCCTTCCTAACTGAGGA
GGAAGATGTGGAAGGAGAAGGCACGAGTGAGGACAGCGAGATGAAAATGA
AGGAAAGCAACCCTAAAGAGAAAAAGAGGAGGAAGAAAACTTTCCTTGCG
CATCCTCTGAGGGTCATTCAGATGCAGGCTCTTGCGATAGGGCTGCCACA
TGTGGTGATACCCATCGAAGGGCCAAATTACCTGGAGAGCTACGCGAACG
CGCTACGTCTCCTCATGTTCACCCACGGGGTAACTCACCTCGTCACAGGG
GACATACTGGACGTTTGCAATCAATTTATGCAAAAAGCCGCTGATGAGGC
AGGTACCGTCCTCCTTCGACCTCTCTGGGAGCGACCACGACGAGAGCTCC
TCGCTTTGATGATGCCACACCCATCCAACCTTCATTCCTCTCTCCTTCCC
TCATCGTCCTCCTCTGGTTTTACCTTCCTCCTCTCATGCTGCAGCGTGGA
CAAAATGGGGAGGGAGCGAGCGAGAGCCTATGTAGGGATCGAGGGGGAAA
GAGCGCTGGAAAAATTGATGAACCTTGCGATGGAAAATGAGGAGCGACGG
GAAAGGAAGACGAGGAACGGAGAAAGGCAGGATCAGGGCAAGGCAGCGGA
CGAGGAGGATGACAAGGAGATTGATGCGTGTGGGGAGGGAGGGGAGTACC
ATTCTATGGTGCTGGACATGCCTCTCTTTAGACATGGACGCCTGGCCTTC
AAGGACGGGGAAAAAAGGGCTCCTGTATTGTTGTCGGATGACAAAAAATA
CTTGTACTGTGACCTCGATGACTTGATCTTCGTGAAGAGAGAGTGAATGG
AGCCACAGATGACTACCAAAAAGGCAGCCCTTTCGTTCACTGGGGGAAAA
GACTGCTTGTTGGCTCTATCAGAGGTCAATAACAAACTCGAGGTTGAAGT
CACGGTTCTTGTGACCTTCGGTCCACCCGAGGCCTTCCTAACTGAGGAGG
AAGATGTGGAAGGAGAAGGCACGAGTGAGGACAGCGAGATGAAAATGAAG
GAAAGCAACCCTAAAGAGAAAAAGAGGAGGAAGAAAACTTTCCTTGCGCA
TCCTCTGAGGGTCATTCAGATGCAGGCTCTTGCGATAGGGCTGCCACATG
TGGTGATACCCATCGAAGGGCCAAATTACCTGGAGAGCTACGCGAACGCG
CTACGTCTCCTCATGTTCACCCACGGGGTAACTCACCTCGTCACAGGGGA
CATACTGGACGTTTGCAATCAATTTATGCAAAAAGCCGCTGATGAGGCAG
GTACCGTCCTCCTTCGACCTCTCTGGGAGCGACCACGACGAGAGCTCCTC
GCTTTGATGATGCCACACCCATCCAACCTTCATTCCTCTCTCCTTCCCTC
ATCGTCCTCCTCTGGTTTTACCTTCCTCCTCTCATGCTGCAGCGTGGACA
AAATGGGGAGGGAGCGAGCGAGAGCCTATGTAGGGATCGAGGGGGAAAGA
GCGCTGGAAAAATTGATGAACCTTGCGATGGAAAATGAGGAGCGACGGGA
AAGGAAGACGAGGAACGGAGAAAGGCAGGATCAGGGCAAGGCAGCGGACG
AGGAGGATGACAAGGAGATTGATGCGTGTGGGGAGGGAGGGGAGTACCAT
TCTATGGTGCTGGACATGCCTCTCTTTAGACATGGACGCCTGGCCTTCAA
GGACGGGGAAAAAAGGGCTCCTGTATTGTTGTCGGATGACAAAAAATACT
TGTACTGTGACCTCGATGACTTGATCTTCGTGAAGAGAGAGTGAATGGAG
CCACAGATGACTACCAAAAAGGCAGCCCTTTCGTTCACTGGGGGAAAAGA
CTGCTTGTTGGCTCTATCAGAGGTCAATAACAAACTCGAGGTTGAAGTCA
CGGTTCTTGTGACCTTCGGTCCACCCGAGGCCTTCCTAACTGAGGAGGAA
GATGTGGAAGGAGAAGGCACGAGTGAGGACAGCGAGATGAAAATGAAGGA
AAGCAACCCTAAAGAGAAAAAGAGGAGGAAGAAAACTTTCCTTGCGCATC
CTCTGAGGGTCATTCAGATGCAGGCTCTTGCGATAGGGCTGCCACATGTG
GTGATACCCATCGAAGGGCCAAATTACCTGGAGAGCTACGCGAACGCGCT
ACGTCTCCTCATGTTCACCCACGGGGTAACTCACCTCGTCACAGGGGACA
TACTGGACGTTTGCAATCAATTTATGCAAAAAGCCGCTGATGAGGCAGGT
ACCGTCCTCCTTCGACCTCTCTGGGAGCGACCACGACGAGAGCTCCTCGC
TTTGATGATGCCACACCCATCCAACCTTCATTCCTCTCTCCTTCCCTCAT
CGTCCTCCTCTGGTTTTACCTTCCTCCTCTCATGCTGCAGCGTGGACAAA
ATGGGGAGGGAGCGAGCGAGAGCCTATGTAGGGATCGAGGGGGAAAGAGC
GCTGGAAAAATTGATGAACCTTGCGATGGAAAATGAGGAGCGACGGGAAA
GGAAGACGAGGAACGGAGAAAGGCAGGATCAGGGCAAGGCAGCGGACGAG
GAGGATGACAAGGAGATTGATGCGTGTGGGGAGGGAGGGGAGTACCATTC
TATGGTGCTGGACATGCCTCTCTTTAGACATGGACGCCTGGCCTTCAAGG
ACGGGGAAAAAAGGGCTCCTGTATTGTTGTCGGATGACAAAAAATACTTG
TACTGTGACCTCGATGACTTGATCTTCGTGAAGAGAGAGTGA

Synonyms

Publications