jgi.p|Nanoce1779_2|632672, mRNA_8028 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632672
Unique Name	mRNA_8028
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2744
Alignment location	scaffold_22:501386..504129 -

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Properties


Property Name	Value
TranscriptId	632758
Track	FilteredModels2
ProteinId	632672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:501386..504129 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632672	gene_8028	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632672	mRNA_8028-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8028	CDS_8028	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:501386..504129-
coding sequence from alignment at scaffold_22:501386..504129-

mRNA sequence

>mRNA_8028 ID=mRNA_8028|Name=jgi.p|Nanoce1779_2|632672|organism=Nannochloropsis oceanica|type=mRNA|length=2744bp
TTTTAATCCAACTATGCCTATAATTTTTCGCTCCTTGTCAAATAAACAAG
CAGCAAGCATCTCATGGCGCCTTTGTCCCTCTGCCTCGAGGAGATGCCGA
AGATGGATCCTTCTCAACGGACCTTTCTTTCTCCCTCCCTCCTAAGCATC
CTGATTGCCCCATAAGGCGCACCACTGCACGTTTCTATCAAAATTCTGAG
CTCCCTTACCCACTGATATAACAGACAACCACAAGTGCCGGCCACAACTA
AGGGGCGTGCAGACAGCCTGTCCATCTAGTGAAGCAGGTACCCTGCGGAG
CCATGCCGCGATTGGGCCTCCCAGTCTTTCATGTCTTTCTCCTCCTTTTC
GCGGGTCTGCATACCACATTTGGAGCTGTCGTTCGGACGAGAGTGGTCGG
TGGAAACGGGACGGCTGGCGCACAGGAAGTTCAAGGCCGACCCACCAACT
TGGCGGTGGACAGAAAAGGGTATTCTTACTTACTTGGAGACTATTCGGCC
TTGAATCGCAACCGCATGTTCTTTATCGATCTCGCCCTTGTATCTAAGGC
TGATGTTCAGCCTTTCGCCGCCAAACAGTCTCCTCAAGGTGAGATATTGT
GGGTAACCGATTTGGTGGCGATGCCAGCCGGCGGTCACAACGGGACGAAG
TACGTTGCATCTGCGACAGGTATGGCGTTGGACGAAGAGGGAAACTGTTT
CATTTCGGGCTATTTCAATACGGCAACTCTGTCATTTCCTACGTCGATGG
CGACCAACATTACGCTGACAAACCCGGGTTTCGCTCAAGGCCGCTATGCG
CAATATGTGGCCAAACTCGATACGGTTGTGGGAATGGTGTTGTGGGCTAC
CCTGCTGAGCTCACCCGGCGGATCTATAGCAAATGCCGACAAAAAATTAC
CGTCGACTATTGTTATTGACAGTACGGGGGGGATCGTATACTTTGGCGGG
GCTTATGGCCCACCCGACGACGATGTATCGGCAAGCGGGACATACGACCT
CAGCGGAACGCCCGTGGCAGCTTATGGGAAACTGGACATGCTCCTCGCTC
AGTTTTCCGCAGAGACTGGGGAAATAGTATGGATCCGCACCTATGGCGGG
AGAGCTGATGATGCAATTGCTTCCTTGGCTGTCTCTAAAAAAAATGATGG
AGTTATCCTATTAGCCAATTCGGGGTCCGCTGTTATTGAATTGGGAGACC
GCGTGCCGACCATCACTATGAGTCGTTGGGATGGGGCTGGCAACACGGTC
CTTCTGGCTGTACTTGATGCCAAGGGCTCGCGCCGATCACCGGCGGGCAG
CATCGTGGTAGCCACGGCCTTTGGTGGGTCGGACGAGTTTAACAACGGGA
AGGGCACCTGCCTAACCGTTGATAACTCGGATGATGTCTACGTCCTGGGG
AATTTCAATGGACGATTCAATGTCGGCTCCGATAGACGTGGAAGGGCAAC
AATGCTCCAATCGCTGCAGGCAAACCCCGCCAACCCCTCCCGGCTCGCTG
ACACGGATGTATTTCTTGGGAAGTATAGCATCGGCATGAGTCCCACATTC
AAGCTTCAGTGGGCGCAGACTTTCGGTGGACTCGACCAGGACATAGCAGG
AGCACTGGACGAGGGTGGCGGGAATGTATTCCTCTCTGTCTTTTCTGCGT
CTAAGACAATCATCATGGGAAATGAGAGCCCGCGTATACTGAGGGGAGCC
ATCGTGCTTGAAAACAATTTGGCCGGTGACTACGCTACGACCAACCTGGC
GACCGTATCGACAAATAACGGAAAGATGATCACAGCCAACAACGAGCTAG
CACCTGCTTGTACTGTGGCACCAGGCGCAGAAATTGACGGACAGCAGACT
TTTGGCCTGGACCAGGATGGATATCTCTATGTGTGGGGACCACACTATTT
GCCTGACATGGGCCCTGATGCGGTAAAAGCCCGCACGGTCTGTGCGGAAG
AGCTACCGGTCGTCCTTGGAGGTGAACTAGTATATCACGCCAAAATCTCA
GTATTATCGTGTAGAGAGGCACGCAGGTGCACACGTCTCTTCGGTTGTGT
GTAAAAAATGTACTGTGGGGTCCAAGACATTTTTTGGTAAGTTGTGTGTC
TCAGCACTTCTACGTTTCCAACGTAAGCCATGGGAGTGTACCTGTACCCT
TCGAAATTAGAAATTGATTGCCCTCAAATTTTATGCGACAAATCATGCCA
TCATTTCATCTTTGTGACTCACTCGGGGCCAGTGAATAAAAGTTCGCAGC
ACTGCGGGAGCAATTAAATCATGTACATACTAAATGCTCCATCCCATTTT
GCGCTTCCAATTTCTTACAGAAAAAGAACGAAAGAGAGAGAGGGGAGGAT
GAGATACGAGAGCTGAAGGCGTCAGAACATGGGGCAACGAAAATAAAAAG
GAAATAGGAGGAGAAGGGAGGGAGGAGGTTAGCTTCGAGAAAGTCTGAAG
AATGAAAAAGACAGGACCAGTCTTTATTTTTTGTTTGATTTACACCAAAT
CAATTTTCATCCTTTAAATTTCGCGTTTGCTTTGACACTTCACCATAAGC
AAGTCAGAGTCAATGCGGGTGGATTATCCTCATCTCAAGGACATCAAAAG
TCTACGGACGGTAGAGAATGCCTACTAGGATCAAGATATGCGGACACTCT
ATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCTCCTTCCCCTTCTCC
TCCTGGCACTGTGTGGGCCGTCCGGGGACTTTGCCTGGTCAAAA

protein sequence of jgi.p|Nanoce1779_2|632672

>mRNA_8028-protein ID=mRNA_8028-protein|Name=jgi.p|Nanoce1779_2|632672|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MPRLGLPVFHVFLLLFAGLHTTFGAVVRTRVVGGNGTAGAQEVQGRPTNL
AVDRKGYSYLLGDYSALNRNRMFFIDLALVSKADVQPFAAKQSPQGEILW
VTDLVAMPAGGHNGTKYVASATGMALDEEGNCFISGYFNTATLSFPTSMA
TNITLTNPGFAQGRYAQYVAKLDTVVGMVLWATLLSSPGGSIANADKKLP
STIVIDSTGGIVYFGGAYGPPDDDVSASGTYDLSGTPVAAYGKLDMLLAQ
FSAETGEIVWIRTYGGRADDAIASLAVSKKNDGVILLANSGSAVIELGDR
VPTITMSRWDGAGNTVLLAVLDAKGSRRSPAGSIVVATAFGGSDEFNNGK
GTCLTVDNSDDVYVLGNFNGRFNVGSDRRGRATMLQSLQANPANPSRLAD
TDVFLGKYSIGMSPTFKLQWAQTFGGLDQDIAGALDEGGGNVFLSVFSAS
KTIIMGNESPRILRGAIVLENNLAGDYATTNLATVSTNNGKMITANNELA
PACTVAPGAEIDGQQTFGLDQDGYLYVWGPHYLPDMGPDAVKARTVCAEE
LPVVLGGELVYHAKISVLSCREARRCTRLFGCV*

mRNA from alignment at scaffold_22:501386..504129-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8028 ID=mRNA_8028|Name=jgi.p|Nanoce1779_2|632672|organism=Nannochloropsis oceanica|type=mRNA|length=2744bp|location=Sequence derived from alignment at scaffold_22:501386..504129- (Nannochloropsis oceanica)
TTTTAATCCAACTATGCCTATAATTTTTCGCTCCTTGTCAAATAAACAAG
CAGCAAGCATCTCATGGCGCCTTTGTCCCTCTGCCTCGAGGAGATGCCGA
AGATGGATCCTTCTCAACGGACCTTTCTTTCTCCCTCCCTCCTAAGCATC
CTGATTGCCCCATAAGGCGCACCACTGCACGTTTCTATCAAAATTCTGAG
CTCCCTTACCCACTGATATAACAGACAACCACAAGTGCCGGCCACAACTA
AGGGGCGTGCAGACAGCCTGTCCATCTAGTGAAGCAGGTACCCTGCGGAG
CCATGCCGCGATTGGGCCTCCCAGTCTTTCATGTCTTTCTCCTCCTTTTC
GCGGGTCTGCATACCACATTTGGAGCTGTCGTTCGGACGAGAGTGGTCGG
TGGAAACGGGACGGCTGGCGCACAGGAAGTTCAAGGCCGACCCACCAACT
TGGCGGTGGACAGAAAAGGGTATTCTTACTTACTTGGAGACTATTCGGCC
TTGAATCGCAACCGCATGTTCTTTATCGATCTCGCCCTTGTATCTAAGGC
TGATGTTCAGCCTTTCGCCGCCAAACAGTCTCCTCAAGGTGAGATATTGT
GGGTAACCGATTTGGTGGCGATGCCAGCCGGCGGTCACAACGGGACGAAG
TACGTTGCATCTGCGACAGGTATGGCGTTGGACGAAGAGGGAAACTGTTT
CATTTCGGGCTATTTCAATACGGCAACTCTGTCATTTCCTACGTCGATGG
CGACCAACATTACGCTGACAAACCCGGGTTTCGCTCAAGGCCGCTATGCG
CAATATGTGGCCAAACTCGATACGGTTGTGGGAATGGTGTTGTGGGCTAC
CCTGCTGAGCTCACCCGGCGGATCTATAGCAAATGCCGACAAAAAATTAC
CGTCGACTATTGTTATTGACAGTACGGGGGGGATCGTATACTTTGGCGGG
GCTTATGGCCCACCCGACGACGATGTATCGGCAAGCGGGACATACGACCT
CAGCGGAACGCCCGTGGCAGCTTATGGGAAACTGGACATGCTCCTCGCTC
AGTTTTCCGCAGAGACTGGGGAAATAGTATGGATCCGCACCTATGGCGGG
AGAGCTGATGATGCAATTGCTTCCTTGGCTGTCTCTAAAAAAAATGATGG
AGTTATCCTATTAGCCAATTCGGGGTCCGCTGTTATTGAATTGGGAGACC
GCGTGCCGACCATCACTATGAGTCGTTGGGATGGGGCTGGCAACACGGTC
CTTCTGGCTGTACTTGATGCCAAGGGCTCGCGCCGATCACCGGCGGGCAG
CATCGTGGTAGCCACGGCCTTTGGTGGGTCGGACGAGTTTAACAACGGGA
AGGGCACCTGCCTAACCGTTGATAACTCGGATGATGTCTACGTCCTGGGG
AATTTCAATGGACGATTCAATGTCGGCTCCGATAGACGTGGAAGGGCAAC
AATGCTCCAATCGCTGCAGGCAAACCCCGCCAACCCCTCCCGGCTCGCTG
ACACGGATGTATTTCTTGGGAAGTATAGCATCGGCATGAGTCCCACATTC
AAGCTTCAGTGGGCGCAGACTTTCGGTGGACTCGACCAGGACATAGCAGG
AGCACTGGACGAGGGTGGCGGGAATGTATTCCTCTCTGTCTTTTCTGCGT
CTAAGACAATCATCATGGGAAATGAGAGCCCGCGTATACTGAGGGGAGCC
ATCGTGCTTGAAAACAATTTGGCCGGTGACTACGCTACGACCAACCTGGC
GACCGTATCGACAAATAACGGAAAGATGATCACAGCCAACAACGAGCTAG
CACCTGCTTGTACTGTGGCACCAGGCGCAGAAATTGACGGACAGCAGACT
TTTGGCCTGGACCAGGATGGATATCTCTATGTGTGGGGACCACACTATTT
GCCTGACATGGGCCCTGATGCGGTAAAAGCCCGCACGGTCTGTGCGGAAG
AGCTACCGGTCGTCCTTGGAGGTGAACTAGTATATCACGCCAAAATCTCA
GTATTATCGTGTAGAGAGGCACGCAGGTGCACACGTCTCTTCGGTTGTGT
GTAAAAAATGTACTGTGGGGTCCAAGACATTTTTTGGTAAGTTGTGTGTC
TCAGCACTTCTACGTTTCCAACGTAAGCCATGGGAGTGTACCTGTACCCT
TCGAAATTAGAAATTGATTGCCCTCAAATTTTATGCGACAAATCATGCCA
TCATTTCATCTTTGTGACTCACTCGGGGCCAGTGAATAAAAGTTCGCAGC
ACTGCGGGAGCAATTAAATCATGTACATACTAAATGCTCCATCCCATTTT
GCGCTTCCAATTTCTTACAGAAAAAGAACGAAAGAGAGAGAGGGGAGGAT
GAGATACGAGAGCTGAAGGCGTCAGAACATGGGGCAACGAAAATAAAAAG
GAAATAGGAGGAGAAGGGAGGGAGGAGGTTAGCTTCGAGAAAGTCTGAAG
AATGAAAAAGACAGGACCAGTCTTTATTTTTTGTTTGATTTACACCAAAT
CAATTTTCATCCTTTAAATTTCGCGTTTGCTTTGACACTTCACCATAAGC
AAGTCAGAGTCAATGCGGGTGGATTATCCTCATCTCAAGGACATCAAAAG
TCTACGGACGGTAGAGAATGCCTACTAGGATCAAGATATGCGGACACTCT
ATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCTCCTTCCCCTTCTCC
TCCTGGCACTGTGTGGGCCGTCCGGGGACTTTGCCTGGTCAAAA

Coding sequence (CDS) from alignment at scaffold_22:501386..504129-

>mRNA_8028 ID=mRNA_8028|Name=jgi.p|Nanoce1779_2|632672|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_22:501386..504129- (Nannochloropsis oceanica)
ATGCCGCGATTGGGCCTCCCAGTCTTTCATGTCTTTCTCCTCCTTTTCGC
GGGTCTGCATACCACATTTGGAGCTGTCGTTCGGACGAGAGTGGTCGGTG
GAAACGGGACGGCTGGCGCACAGGAAGTTCAAGGCCGACCCACCAACTTG
GCGGTGGACAGAAAAGGGTATTCTTACTTACTTGGAGACTATTCGGCCTT
GAATCGCAACCGCATGTTCTTTATCGATCTCGCCCTTGTATCTAAGGCTG
ATGTTCAGCCTTTCGCCGCCAAACAGTCTCCTCAAGGTGAGATATTGTGG
GTAACCGATTTGGTGGCGATGCCAGCCGGCGGTCACAACGGGACGAAGTA
CGTTGCATCTGCGACAGGTATGGCGTTGGACGAAGAGGGAAACTGTTTCA
TTTCGGGCTATTTCAATACGGCAACTCTGTCATTTCCTACGTCGATGGCG
ACCAACATTACGCTGACAAACCCGGGTTTCGCTCAAGGCCGCTATGCGCA
ATATGTGGCCAAACTCGATACGGTTGTGGGAATGGTGTTGTGGGCTACCC
TGCTGAGCTCACCCGGCGGATCTATAGCAAATGCCGACAAAAAATTACCG
TCGACTATTGTTATTGACAGTACGGGGGGGATCGTATACTTTGGCGGGGC
TTATGGCCCACCCGACGACGATGTATCGGCAAGCGGGACATACGACCTCA
GCGGAACGCCCGTGGCAGCTTATGGGAAACTGGACATGCTCCTCGCTCAG
TTTTCCGCAGAGACTGGGGAAATAGTATGGATCCGCACCTATGGCGGGAG
AGCTGATGATGCAATTGCTTCCTTGGCTGTCTCTAAAAAAAATGATGGAG
TTATCCTATTAGCCAATTCGGGGTCCGCTGTTATTGAATTGGGAGACCGC
GTGCCGACCATCACTATGAGTCGTTGGGATGGGGCTGGCAACACGGTCCT
TCTGGCTGTACTTGATGCCAAGGGCTCGCGCCGATCACCGGCGGGCAGCA
TCGTGGTAGCCACGGCCTTTGGTGGGTCGGACGAGTTTAACAACGGGAAG
GGCACCTGCCTAACCGTTGATAACTCGGATGATGTCTACGTCCTGGGGAA
TTTCAATGGACGATTCAATGTCGGCTCCGATAGACGTGGAAGGGCAACAA
TGCTCCAATCGCTGCAGGCAAACCCCGCCAACCCCTCCCGGCTCGCTGAC
ACGGATGTATTTCTTGGGAAGTATAGCATCGGCATGAGTCCCACATTCAA
GCTTCAGTGGGCGCAGACTTTCGGTGGACTCGACCAGGACATAGCAGGAG
CACTGGACGAGGGTGGCGGGAATGTATTCCTCTCTGTCTTTTCTGCGTCT
AAGACAATCATCATGGGAAATGAGAGCCCGCGTATACTGAGGGGAGCCAT
CGTGCTTGAAAACAATTTGGCCGGTGACTACGCTACGACCAACCTGGCGA
CCGTATCGACAAATAACGGAAAGATGATCACAGCCAACAACGAGCTAGCA
CCTGCTTGTACTGTGGCACCAGGCGCAGAAATTGACGGACAGCAGACTTT
TGGCCTGGACCAGGATGGATATCTCTATGTGTGGGGACCACACTATTTGC
CTGACATGGGCCCTGATGCGGTAAAAGCCCGCACGGTCTGTGCGGAAGAG
CTACCGGTCGTCCTTGGAGGTGAACTAGTATATCACGCCAAAATCTCAGT
ATTATCGTGTAGAGAGGCACGCAGGTGCACACGTCTCTTCGGTTGTGTGT
AA

Synonyms

Publications