jgi.p|Nanoce1779_2|632671, mRNA_8027 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632671
Unique NamemRNA_8027
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length707
Alignment locationscaffold_22:499645..500713 -

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Properties
Property NameValue
TranscriptId632757
TrackFilteredModels2
ProteinId632671
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:499645..500713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632671gene_8027Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632671mRNA_8027-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8027CDS_8027Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8027 ID=mRNA_8027|Name=jgi.p|Nanoce1779_2|632671|organism=Nannochloropsis oceanica|type=mRNA|length=707bp
ATGAATGCCGCTGGTCCTGTAGGCGCAGGGAAAGAGAAAGAACTAACGTA
TGCTGTGGAGAGGTTCTTCGATTTGCTGCAGGAGAGTCTCTCTGCATCTC
GCCCTACCGATCTGGTCCCTGTCGTCTTCGAGATCAAAGGCGCGTCTTCC
TACCTCATTTGTAGGGAGGGGAACATCGAGAAGCGGCTTCCGGGAGCGGG
AGAAGAGGAAGGGAAGGAGGGACAGGTGATAGGCTGTCGCATCACGTGTG
CCCTGCCCACCCTCCTCGGCCTGGCCAGCGGCCGTCTGTCTCCTTCCACA
GCGTTCCTGACAGGAGCTGTCCGCGTCTCGGGCGACATCAAGAAAGTCCT
TGCAGGTTTAGGTACGTAGGGAGGGAAGGGGTGACGGAAGGAAGGAGAAA
GGGAGGGAGCCTTGTGAAAGATCTCGTTGCACTGTACTGTCTGTCGGCGT
CTCCTGAGAGATTGAAGAAATGTAAGCTGGATAAGGCGGGCAGTGAGGGA
AAGCGAATCGGTGAGAAGAAGGGAGAGTGACAGAGAGCAAACATATTGTT
TTGTATCGTATGTTTTGTTTCAACACTCGCCATAATCGAAGCCCATCATC
CCTTTCATTTGCCCTCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTC
AGGCCCCTTTTTGAAAGACGCCACGACGCAATGGATGGACGAGAATCCAG
ATCTAGT
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protein sequence of jgi.p|Nanoce1779_2|632671

>mRNA_8027-protein ID=mRNA_8027-protein|Name=jgi.p|Nanoce1779_2|632671|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MNAAGPVGAGKEKELTYAVERFFDLLQESLSASRPTDLVPVVFEIKGASS
YLICREGNIEKRLPGAGEEEGKEGQVIGCRITCALPTLLGLASGRLSPST
AFLTGAVRVSGDIKKVLAGLGT*
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mRNA from alignment at scaffold_22:499645..500713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8027 ID=mRNA_8027|Name=jgi.p|Nanoce1779_2|632671|organism=Nannochloropsis oceanica|type=mRNA|length=1069bp|location=Sequence derived from alignment at scaffold_22:499645..500713- (Nannochloropsis oceanica)
ATGAATGCCGCTGGTCCTGTAGGCGCAGGGAAAGAGAAAGAACTAACGTA
TGCTGTGGAGAGGTTCTTCGATTTGCTGCAGGTATACGAGACAGGGAGCG
AGCGCGAGGGAGGTTTTGGGAGCTCGGAAGAGAGGGAGGACGTGCCATAA
ATTTGATATGCAGGAATGACGAAAGCTGGCAAATGGTCTATGTATTGGCG
GGAATCATTGACCATGTACGTAGTCTTACCATCCCTCCCTCCGTTCCCTC
TCTCCCTCCCTCCCTCTCCTGTAGGAGAGTCTCTCTGCATCTCGCCCTAC
CGATCTGGTCCCTGTCGTCTTCGAGATCAAAGGCGCGTCTTCCTACCTCA
TTTGTAGGGAGGGGAACATCGAGAAGCGGCTTCCGGGAGCGGGAGAAGAG
GAAGGGAAGGAGGGACAGGTGATAGGCTGTCGGTGCGTACATGTGCCTGG
AACGCGTCGGCATAACAGCCCTTTCCCGTTTTTTGTCGGGTCGAAGTCAT
ATGCCGAGCGAATGGTTGCGCTATGTCTGACTCGGCACAGAGGCATTCAT
ACCCCTCCTCCGCTCCCTCCCTCTCATCCCTCCCTGCCCCCCTCCCTCCA
GCATCACGTGTGCCCTGCCCACCCTCCTCGGCCTGGCCAGCGGCCGTCTG
TCTCCTTCCACAGCGTTCCTGACAGGAGCTGTCCGCGTCTCGGGCGACAT
CAAGAAAGTCCTTGCAGGTTTAGGTACGTAGGGAGGGAAGGGGTGACGGA
AGGAAGGAGAAAGGGAGGGAGCCTTGTGAAAGATCTCGTTGCACTGTACT
GTCTGTCGGCGTCTCCTGAGAGATTGAAGAAATGTAAGCTGGATAAGGCG
GGCAGTGAGGGAAAGCGAATCGGTGAGAAGAAGGGAGAGTGACAGAGAGC
AAACATATTGTTTTGTATCGTATGTTTTGTTTCAACACTCGCCATAATCG
AAGCCCATCATCCCTTTCATTTGCCCTCTCCCTCCCTCCTTCCCTCCCTC
CCTCCCTCCCTCAGGCCCCTTTTTGAAAGACGCCACGACGCAATGGATGG
ACGAGAATCCAGATCTAGT
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Coding sequence (CDS) from alignment at scaffold_22:499645..500713-

>mRNA_8027 ID=mRNA_8027|Name=jgi.p|Nanoce1779_2|632671|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_22:499645..500713- (Nannochloropsis oceanica)
CATCACGTGTGCCCTGCCCACCCTCCTCGGCCTGGCCAGCGGCCGTCTGT
CTCCTTCCACAGCGTTCCTGACAGGAGCTGTCCGCGTCTCGGGCGACATC
AAGAAAGTCCTTGCAGGTTTAGGTACGTAGGAGAGTCTCTCTGCATCTCG
CCCTACCGATCTGGTCCCTGTCGTCTTCGAGATCAAAGGCGCGTCTTCCT
ACCTCATTTGTAGGGAGGGGAACATCGAGAAGCGGCTTCCGGGAGCGGGA
GAAGAGGAAGGGAAGGAGGGACAGGTGATAGGCTGTCGATGAATGCCGCT
GGTCCTGTAGGCGCAGGGAAAGAGAAAGAACTAACGTATGCTGTGGAGAG
GTTCTTCGATTTGCTGCAGCATCACGTGTGCCCTGCCCACCCTCCTCGGC
CTGGCCAGCGGCCGTCTGTCTCCTTCCACAGCGTTCCTGACAGGAGCTGT
CCGCGTCTCGGGCGACATCAAGAAAGTCCTTGCAGGTTTAGGTACGTAGG
AGAGTCTCTCTGCATCTCGCCCTACCGATCTGGTCCCTGTCGTCTTCGAG
ATCAAAGGCGCGTCTTCCTACCTCATTTGTAGGGAGGGGAACATCGAGAA
GCGGCTTCCGGGAGCGGGAGAAGAGGAAGGGAAGGAGGGACAGGTGATAG
GCTGTCGATGAATGCCGCTGGTCCTGTAGGCGCAGGGAAAGAGAAAGAAC
TAACGTATGCTGTGGAGAGGTTCTTCGATTTGCTGCAGCATCACGTGTGC
CCTGCCCACCCTCCTCGGCCTGGCCAGCGGCCGTCTGTCTCCTTCCACAG
CGTTCCTGACAGGAGCTGTCCGCGTCTCGGGCGACATCAAGAAAGTCCTT
GCAGGTTTAGGTACGTAGGAGAGTCTCTCTGCATCTCGCCCTACCGATCT
GGTCCCTGTCGTCTTCGAGATCAAAGGCGCGTCTTCCTACCTCATTTGTA
GGGAGGGGAACATCGAGAAGCGGCTTCCGGGAGCGGGAGAAGAGGAAGGG
AAGGAGGGACAGGTGATAGGCTGTCGATGAATGCCGCTGGTCCTGTAGGC
GCAGGGAAAGAGAAAGAACTAACGTATGCTGTGGAGAGGTTCTTCGATTT
GCTGCAG
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Synonyms
Publications