jgi.p|Nanoce1779_2|183980, mRNA_8025 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|183980
Unique NamemRNA_8025
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length940
Alignment locationscaffold_22:489463..490402 -

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Properties
Property NameValue
TranscriptId184066
TrackFilteredModels2
ProteinId183980
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:489463..490402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183980gene_8025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183980mRNA_8025-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8025CDS_8025Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8025 ID=mRNA_8025|Name=jgi.p|Nanoce1779_2|183980|organism=Nannochloropsis oceanica|type=mRNA|length=940bp
TGGAAAAGGGTGTAGAGGCGGAGCAACAGGGGGAGAAGAGGAGGGTATGC
AGTAGGACGCTCTTCCTCTTATTTGGGAGTGCGGTTTGAGCGCGAAGGCG
TGGTCCCAAAATGCTACAAATATACGAGAAAAAGAAGAAGAGGGAAGAGA
GGAGATTATGTATGAAGAGATATCCCCACTCGCTCTGTCCGGAGGAAGTC
GATTGCTTTGATCGCGGAAGGAAAAGCTGCTGTTTCCGTCAAGGAAAATG
GGCTGCCATCAAGAGCATCCGGTGGCTTGTTTTTGCGATTTATTTTGGTT
TGATTGTTCTTCTTCTCCTGGTTCTCCTTTCTCCTCCTTCGTTTCTTCCT
CCTTCTTTCATTTTTCTGTTTTACTTGTCCACCTTTCCCCCATCTTTTCC
TCGCGAGGGTTAGAGTGTTACGTCGCAGTGATTTACCGGTGCCGTGTGCC
TTGTGTGTCTAATGTCAACATTAAAATACCACTAGAAATACTCTTACTCT
TGCCTCCCTCTCGACCTGTCTCTCTTCCTCACTCATATCTGGTGCTGCTT
CTGGCTGCTGGAGCCAGCCTGCGCTCCCTCAGAAACGAGAAGTCATGTGA
TTCCTATCTCTTCCACTGGTCCTTCCGCTTTCCCTTCCTCCCTTCCCACG
AACAGTTTAAAGTTTCAATTTATTTTCGCTCTTGCTTCCTCTCTCTGCCT
GCCTTCGTTCCTTATTTCCTCTTCTCCTCCTTCTTTTCACCCTACACTGA
ACCCCAACGGGTTCGACGCCTGCGCTAAGGATGTAAATTTAGCGGCCAAA
CTATCCTCCCTGCCACCCTCCCTCCATTCCTCTTTTCACCAAAAAGAAGA
AGGAGTCGAAGATGGAAGAGAAATGAAAGGCGCGCATGCCCATCCTTATC
CTTGTCGAATTTCTCCCTCTTGCTTCTCCCCCCCCCCACA
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protein sequence of jgi.p|Nanoce1779_2|183980

>mRNA_8025-protein ID=mRNA_8025-protein|Name=jgi.p|Nanoce1779_2|183980|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MGCHQEHPVACFCDLFWFDCSSSPGSPFSSFVSSSFFHFSVLLVHLSPIF
SSRGLECYVAVIYRCRVPCVSNVNIKIPLEILLLLPPSRPVSLPHSYLVL
LLAAGASLRSLRNEKSCDSYLFHWSFRFPFLPSHEQFKVSIYFRSCFLSL
PAFVPYFLFSSFFSPYTEPQRVRRLR*
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mRNA from alignment at scaffold_22:489463..490402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8025 ID=mRNA_8025|Name=jgi.p|Nanoce1779_2|183980|organism=Nannochloropsis oceanica|type=mRNA|length=940bp|location=Sequence derived from alignment at scaffold_22:489463..490402- (Nannochloropsis oceanica)
TGGAAAAGGGTGTAGAGGCGGAGCAACAGGGGGAGAAGAGGAGGGTATGC
AGTAGGACGCTCTTCCTCTTATTTGGGAGTGCGGTTTGAGCGCGAAGGCG
TGGTCCCAAAATGCTACAAATATACGAGAAAAAGAAGAAGAGGGAAGAGA
GGAGATTATGTATGAAGAGATATCCCCACTCGCTCTGTCCGGAGGAAGTC
GATTGCTTTGATCGCGGAAGGAAAAGCTGCTGTTTCCGTCAAGGAAAATG
GGCTGCCATCAAGAGCATCCGGTGGCTTGTTTTTGCGATTTATTTTGGTT
TGATTGTTCTTCTTCTCCTGGTTCTCCTTTCTCCTCCTTCGTTTCTTCCT
CCTTCTTTCATTTTTCTGTTTTACTTGTCCACCTTTCCCCCATCTTTTCC
TCGCGAGGGTTAGAGTGTTACGTCGCAGTGATTTACCGGTGCCGTGTGCC
TTGTGTGTCTAATGTCAACATTAAAATACCACTAGAAATACTCTTACTCT
TGCCTCCCTCTCGACCTGTCTCTCTTCCTCACTCATATCTGGTGCTGCTT
CTGGCTGCTGGAGCCAGCCTGCGCTCCCTCAGAAACGAGAAGTCATGTGA
TTCCTATCTCTTCCACTGGTCCTTCCGCTTTCCCTTCCTCCCTTCCCACG
AACAGTTTAAAGTTTCAATTTATTTTCGCTCTTGCTTCCTCTCTCTGCCT
GCCTTCGTTCCTTATTTCCTCTTCTCCTCCTTCTTTTCACCCTACACTGA
ACCCCAACGGGTTCGACGCCTGCGCTAAGGATGTAAATTTAGCGGCCAAA
CTATCCTCCCTGCCACCCTCCCTCCATTCCTCTTTTCACCAAAAAGAAGA
AGGAGTCGAAGATGGAAGAGAAATGAAAGGCGCGCATGCCCATCCTTATC
CTTGTCGAATTTCTCCCTCTTGCTTCTCCCCCCCCCCACA
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Coding sequence (CDS) from alignment at scaffold_22:489463..490402-

>mRNA_8025 ID=mRNA_8025|Name=jgi.p|Nanoce1779_2|183980|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_22:489463..490402- (Nannochloropsis oceanica)
ATGGGCTGCCATCAAGAGCATCCGGTGGCTTGTTTTTGCGATTTATTTTG
GTTTGATTGTTCTTCTTCTCCTGGTTCTCCTTTCTCCTCCTTCGTTTCTT
CCTCCTTCTTTCATTTTTCTGTTTTACTTGTCCACCTTTCCCCCATCTTT
TCCTCGCGAGGGTTAGAGTGTTACGTCGCAGTGATTTACCGGTGCCGTGT
GCCTTGTGTGTCTAATGTCAACATTAAAATACCACTAGAAATACTCTTAC
TCTTGCCTCCCTCTCGACCTGTCTCTCTTCCTCACTCATATCTGGTGCTG
CTTCTGGCTGCTGGAGCCAGCCTGCGCTCCCTCAGAAACGAGAAGTCATG
TGATTCCTATCTCTTCCACTGGTCCTTCCGCTTTCCCTTCCTCCCTTCCC
ACGAACAGTTTAAAGTTTCAATTTATTTTCGCTCTTGCTTCCTCTCTCTG
CCTGCCTTCGTTCCTTATTTCCTCTTCTCCTCCTTCTTTTCACCCTACAC
TGAACCCCAACGGGTTCGACGCCTGCGCTAA
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Synonyms
Publications