jgi.p|Nanoce1779_2|183864, mRNA_8023 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|183864
Unique NamemRNA_8023
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length832
Alignment locationscaffold_22:483193..484297 +

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Properties
Property NameValue
TranscriptId183950
TrackFilteredModels2
ProteinId183864
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:483193..484297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183864gene_8023Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183864mRNA_8023-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8023CDS_8023Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8023 ID=mRNA_8023|Name=jgi.p|Nanoce1779_2|183864|organism=Nannochloropsis oceanica|type=mRNA|length=832bp
ATTGCCAGGGCCCTGCTCGTCAATCCCAAGGTACACAAGTGAAGCGTGAC
GCAGCCCACCCTCCCTTCCTCCCTCCCTTCATTTTGACAACTATGAGTCA
TCAAAGCTCAACGAAACCCCTCCCTCCCTTCCTCCATCCTTTTCTCCCTT
GGATTCTGACGCCTATTTCTTTCGTCCCTTCTCACCTTTCCTCCCTCCTT
CAGATTCTAATGCTGGATGAAGCCACGTCTTCCCTCGACGCCGAGAGCGA
GCATAAAGTCCAAGAGGCCTGTGACAGGCTCATGGTGGGTCGCACCGTGA
TTGTCATCGCGCACCGCCTCTCGACCGTCCGAAATGCGGCCAAGATCGTG
GTTATGGGCGAGGGCGGGATCAAGGTGAGGGGCCAAGCGAGGGAGGGAAG
GAGAAAGGGAGATGCCGACTCGTCTTGTCTGTGGCCCATACGGTCCTTGT
TGGCCAGATCCTTATTTCCCAACGGCATGGGTCTGCTTACCGCCTTTCCC
TCCCTCCCTCCCTCCCTCCCTCTCCAGAATATTGGCACACACGACGAGTT
GATGGAAACGTCCGACATCTACCGCCAGCTCATTCGCCGTCAGATCGTTT
CGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCGCC
ACCGCCGCCACCGCCGCCGCCGCCTCCTCCTGTGACAAGGACGAGAACAG
AGAAGCAGACGGCTTGCCACCATCATCGTCATCATAGGCACCGCCCGACT
CTTCCTCCCCTCTTTCCTCCCTCCCTCCTCCTCCTCTTCCACTCCTTCCC
CCTCATTGGTCGCCCGGCTCTTGTCGATGGAG
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protein sequence of jgi.p|Nanoce1779_2|183864

>mRNA_8023-protein ID=mRNA_8023-protein|Name=jgi.p|Nanoce1779_2|183864|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MSHQSSTKPLPPFLHPFLPWILTPISFVPSHLSSLLQILMLDEATSSLDA
ESEHKVQEACDRLMVGRTVIVIAHRLSTVRNAAKIVVMGEGGIKVRGQAR
EGRRKGDADSSCLWPIRSLLARSLFPNGMGLLTAFPSLPPSLPLQNIGTH
DELMETSDIYRQLIRRQIVSSSSSSSSSSSSSSSSATAATAAAASSCDKD
ENREADGLPPSSSS*
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mRNA from alignment at scaffold_22:483193..484297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8023 ID=mRNA_8023|Name=jgi.p|Nanoce1779_2|183864|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp|location=Sequence derived from alignment at scaffold_22:483193..484297+ (Nannochloropsis oceanica)
ATTGCCAGGGCCCTGCTCGTCAATCCCAAGGTACACAAGTGAAGCGTGAC
GCAGCCCACCCTCCCTTCCTCCCTCCCTTCATTTTGACAACTATGAGTCA
TCAAAGCTCAACGAAACCCCTCCCTCCCTTCCTCCATCCTTTTCTCCCTT
GGATTCTGACGCCTATTTCTTTCGTCCCTTCTCACCTTTCCTCCCTCCTT
CAGATTCTAATGCTGGATGAAGCCACGTCTTCCCTCGACGCCGAGAGCGA
GCATAAAGTCCAAGAGGCCTGTGACAGGCTCATGGTAGGGAGGGAGGGAG
GGAGGGAGGGGGGGGGGGAGGGGGGTTGTTGAGTTTTGATGACTCATATT
TATCAAGATGAAGGGAGGGAGGGAGGGAGGGAGGGAGTGAAGGAGGACGA
GGTGTACAAGCCCTTCTATTCCTTCTATCTTTCTCTTTCCCTCTCGCGCT
CTCTCGCTCTCCCTCTTTCGCATACACGCGCACACACACAAATAAACCTA
CGACCAACACACTCATTTGAAGTACTACAAATGCACTCACGCACCATCTC
CCTCCAGGTGGGTCGCACCGTGATTGTCATCGCGCACCGCCTCTCGACCG
TCCGAAATGCGGCCAAGATCGTGGTTATGGGCGAGGGCGGGATCAAGGTG
AGGGGCCAAGCGAGGGAGGGAAGGAGAAAGGGAGATGCCGACTCGTCTTG
TCTGTGGCCCATACGGTCCTTGTTGGCCAGATCCTTATTTCCCAACGGCA
TGGGTCTGCTTACCGCCTTTCCCTCCCTCCCTCCCTCCCTCCCTCTCCAG
AATATTGGCACACACGACGAGTTGATGGAAACGTCCGACATCTACCGCCA
GCTCATTCGCCGTCAGATCGTTTCGTCGTCGTCGTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCTTCCGCCACCGCCGCCACCGCCGCCGCCGCCTCC
TCCTGTGACAAGGACGAGAACAGAGAAGCAGACGGCTTGCCACCATCATC
GTCATCATAGGCACCGCCCGACTCTTCCTCCCCTCTTTCCTCCCTCCCTC
CTCCTCCTCTTCCACTCCTTCCCCCTCATTGGTCGCCCGGCTCTTGTCGA
TGGAG
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Coding sequence (CDS) from alignment at scaffold_22:483193..484297+

>mRNA_8023 ID=mRNA_8023|Name=jgi.p|Nanoce1779_2|183864|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_22:483193..484297+ (Nannochloropsis oceanica)
ATGAGTCATCAAAGCTCAACGAAACCCCTCCCTCCCTTCCTCCATCCTTT
TCTCCCTTGGATTCTGACGCCTATTTCTTTCGTCCCTTCTCACCTTTCCT
CCCTCCTTCAGATTCTAATGCTGGATGAAGCCACGTCTTCCCTCGACGCC
GAGAGCGAGCATAAAGTCCAAGAGGCCTGTGACAGGCTCATGGTGGGTCG
CACCGTGATTGTCATCGCGCACCGCCTCTCGACCGTCCGAAATGCGGCCA
AGATCGTGGTTATGGGCGAGGGCGGGATCAAGGTGAGGGGCCAAGCGAGG
GAGGGAAGGAGAAAGGGAGATGCCGACTCGTCTTGTCTGTGGCCCATACG
GTCCTTGTTGGCCAGATCCTTATTTCCCAACGGCATGGGTCTGCTTACCG
CCTTTCCCTCCCTCCCTCCCTCCCTCCCTCTCCAGAATATTGGCACACAC
GACGAGTTGATGGAAACGTCCGACATCTACCGCCAGCTCATTCGCCGTCA
GATCGTTTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CTTCCGCCACCGCCGCCACCGCCGCCGCCGCCTCCTCCTGTGACAAGGAC
GAGAACAGAGAAGCAGACGGCTTGCCACCATCATCGTCATCATAGATGAG
TCATCAAAGCTCAACGAAACCCCTCCCTCCCTTCCTCCATCCTTTTCTCC
CTTGGATTCTGACGCCTATTTCTTTCGTCCCTTCTCACCTTTCCTCCCTC
CTTCAGATTCTAATGCTGGATGAAGCCACGTCTTCCCTCGACGCCGAGAG
CGAGCATAAAGTCCAAGAGGCCTGTGACAGGCTCATGGTGGGTCGCACCG
TGATTGTCATCGCGCACCGCCTCTCGACCGTCCGAAATGCGGCCAAGATC
GTGGTTATGGGCGAGGGCGGGATCAAGGTGAGGGGCCAAGCGAGGGAGGG
AAGGAGAAAGGGAGATGCCGACTCGTCTTGTCTGTGGCCCATACGGTCCT
TGTTGGCCAGATCCTTATTTCCCAACGGCATGGGTCTGCTTACCGCCTTT
CCCTCCCTCCCTCCCTCCCTCCCTCTCCAGAATATTGGCACACACGACGA
GTTGATGGAAACGTCCGACATCTACCGCCAGCTCATTCGCCGTCAGATCG
TTTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCC
GCCACCGCCGCCACCGCCGCCGCCGCCTCCTCCTGTGACAAGGACGAGAA
CAGAGAAGCAGACGGCTTGCCACCATCATCGTCATCATAG
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Synonyms
Publications