jgi.p|Nanoce1779_2|183384, mRNA_8021 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|183384
Unique NamemRNA_8021
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length885
Alignment locationscaffold_22:465950..467373 +

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Properties
Property NameValue
TranscriptId183470
TrackFilteredModels2
ProteinId183384
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:465950..467373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183384gene_8021Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183384mRNA_8021-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8021CDS_8021Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8021 ID=mRNA_8021|Name=jgi.p|Nanoce1779_2|183384|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
CGCGCAATACCTTTGCCACTGGCGATGTGCCAGCCTGCCAGGGCAGAGAA
CTAATCTGAATTGGAAAGGAATTTAGGGCTGTCTTGCCCCTGGACGACTC
ACTCTCCAACCCCGGAGCCTCTGCAGCACACAATTAAGCATGCATCTCCC
TCTTCTGCTTTCCCTTATTTACTTAGTCCTGGTGCCGGCACGGGCAAGTC
AGGAGACAAGCACCACTGGGCATGATGATGATGGTCTTGCTTTTCACGAT
GGCTGTGCTTGTCCGTGCTTTGGACCTACATTACACCGCACAATCGTGCC
GCACCACACAATACACACACATACATGCACAGAGACACGGACGGCCAGGG
CATTTCCTGTCCCTCCATGCTGACCTGGCAGTGCTGGTGGCCCTTCTTGC
CCAGCGCGCTGCTCTGTCTCCTTGCCCCTTCTCACCACACTTCTGGCTTA
TCCATACCACGGAATCACACAGGCACGGATGCGTTTCTTATAATTAAGAG
CAAGGAGAGGAATTTCGATGTGCTCCATTACCGGTTCAAGACGGCCACGG
AGACCAACTCCCTGCGCTTTGAAGGACACAGCTTGCGGGTGTTTGATATA
AAATCGGCCATCGTCGCAGAGAAGCGGCTGGACAAAGGCCTAGATTTCGA
TTTAGAGCTTTCTAACCCACAGACTAAGGAAGTATATCTTGACGAAACCA
AGTCCATCGACAAGAACAGCACCGTGCTAGTAAAGCGTGTGGCGGCTCCC
CGGGGGTCAGTGGGGCTGCTGGCGCGGCTGAAGGCTAACACGCCGCTGAC
ACCGCAAAACATGTACGTATGGAGGGGAGGAGGGTAGAGTAGGTGTAGTA
AGTAATAGAGAGGCTTAAATATTTTAGAGAAGATG
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protein sequence of jgi.p|Nanoce1779_2|183384

>mRNA_8021-protein ID=mRNA_8021-protein|Name=jgi.p|Nanoce1779_2|183384|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MHRDTDGQGISCPSMLTWQCWWPFLPSALLCLLAPSHHTSGLSIPRNHTG
TDAFLIIKSKERNFDVLHYRFKTATETNSLRFEGHSLRVFDIKSAIVAEK
RLDKGLDFDLELSNPQTKEVYLDETKSIDKNSTVLVKRVAAPRGSVGLLA
RLKANTPLTPQNMYVWRGGG*
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mRNA from alignment at scaffold_22:465950..467373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8021 ID=mRNA_8021|Name=jgi.p|Nanoce1779_2|183384|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp|location=Sequence derived from alignment at scaffold_22:465950..467373+ (Nannochloropsis oceanica)
CGCGCAATACCTTTGCCACTGGCGATGTGCCAGCCTGCCAGGGCAGAGAA
CTAATCTGAATTGGAAAGGAATTTAGGGCTGTCTTGCCCCTGGACGACTC
ACTCTCCAACCCCGGAGCCTCTGCAGCACACAATTAAGCATGCATCTCCC
TCTTCTGCTTTCCCTTATTTACTTAGTCCTGGTGCCGGCACGGGCAAGTC
AGGAGACAAGCACCACTGGGCATGATGATGATGGTCTTGCTTTTCACGAT
GGCTGTGCTTGTCCGTGCTTTGGACCTACATTACACCGCACAATCGTGCC
GCACCACACAATACACACACATACATGCACAGAGACACGGACGGCCAGGG
CATTTCCTGTCCCTCCATGCTGACCTGGCAGTGCTGGTGGCCCTTCTTGC
CCAGCGCGCTGCTCTGTCTCCTTGCCCCTTCTCACCACACTTCTGGCTTA
TCCATACCACGGAATCACACAGGCACGGATGCGTTTCTTATAATTAAGAG
CAAGGAGAGGAATTTCGAGTGAGCAGGCGAGCTAGAGACGGAGATAGAGA
AAGAGGAGGGGGAGATATAAAAACACCACCAAAGAAGAAAAGAAACGAGG
CTACACACCCTTCCACCATGTCGTCTGTGCTCCATTACCGGTTCAAGACG
GCCACGGAGACCAACTCCCTGCGCTTTGAAGGACACAGCTTGCGGGTGTT
TGATATAAAAGTAAGAAGGACATCTTGAGGGAGGGAGGCAGAGAGGGCGT
GGAGGGAGGGGGAGGGAAGGCCTTAACATCACCACATGCGTCCCCACTTT
CCACCGCCTCCTACAAGCATGCCATCAAAAGGACGGTGCTAAGCCAGACC
TGACGCATTGGTTATCTTTCCATTCGTTATCTTACCCACCCCTCTCTCCC
TTCCATCCCACCCCAACCCTCTCTCCCCCCTCCCTCCAGTCGGCCATCGT
CGCAGAGAAGCGGCTGGACAAAGGCCTAGATTTCGATTTAGAGCTTTCTA
ACCCACAGACTAAGGAAGGTAGGTGCCGTTTAAAGGAGGGACGGATGGAT
GGATGGATGGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGAAGC
TGACCTTGGGTGACGCCCCCTGGGTGCAGAAGGGCTGCTAGCAAGACACT
TACCCTCGCCCCCTTCCTCTCTCCCTCCCTCCTCCCCTCCCTAGTATATC
TTGACGAAACCAAGTCCATCGACAAGAACAGCACCGTGCTAGTAAAGCGT
GTGGCGGCTCCCCGGGGGTCAGTGGGGCTGCTGGCGCGGCTGAAGGCTAA
CACGCCGCTGACACCGCAAAACATGTACGTATGGAGGTGGAGGACGAGAA
GGGAGGGAGGGAGGGGAGGAGGGTAGAGTAGGTGTAGTAAGTAATAGAGA
GGCTTAAATATTTTAGAGAAGATG
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Coding sequence (CDS) from alignment at scaffold_22:465950..467373+

>mRNA_8021 ID=mRNA_8021|Name=jgi.p|Nanoce1779_2|183384|organism=Nannochloropsis oceanica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_22:465950..467373+ (Nannochloropsis oceanica)
ATGCACAGAGACACGGACGGCCAGGGCATTTCCTGTCCCTCCATGCTGAC
CTGGCAGTGCTGGTGGCCCTTCTTGCCCAGCGCGCTGCTCTGTCTCCTTG
CCCCTTCTCACCACACTTCTGGCTTATCCATACCACGGAATCACACAGGC
ACGGATGCGTTTCTTATAATTAAGAGCAAGGAGAGGAATTTCGATGTGCT
CCATTACCGGTTCAAGACGGCCACGGAGACCAACTCCCTGCGCTTTGAAG
GACACAGCTTGCGGGTGTTTGATATAAAATCGGCCATCGTCGCAGAGAAG
CGGCTGGACAAAGGCCTAGATTTCGATTTAGAGCTTTCTAACCCACAGAC
TAAGGAAGTATATCTTGACGAAACCAAGTCCATCGACAAGAACAGCACCG
TGCTAGTAAAGCGTGTGGCGGCTCCCCGGGGGTCAGTGGGGCTGCTGGCG
CGGCTGAAGGCTAACACGCCGCTGACACCGCAAAACATGTACGTATGGAG
GGGAGGAGGGTAGATGCACAGAGACACGGACGGCCAGGGCATTTCCTGTC
CCTCCATGCTGACCTGGCAGTGCTGGTGGCCCTTCTTGCCCAGCGCGCTG
CTCTGTCTCCTTGCCCCTTCTCACCACACTTCTGGCTTATCCATACCACG
GAATCACACAGGCACGGATGCGTTTCTTATAATTAAGAGCAAGGAGAGGA
ATTTCGATGTGCTCCATTACCGGTTCAAGACGGCCACGGAGACCAACTCC
CTGCGCTTTGAAGGACACAGCTTGCGGGTGTTTGATATAAAATCGGCCAT
CGTCGCAGAGAAGCGGCTGGACAAAGGCCTAGATTTCGATTTAGAGCTTT
CTAACCCACAGACTAAGGAAGTATATCTTGACGAAACCAAGTCCATCGAC
AAGAACAGCACCGTGCTAGTAAAGCGTGTGGCGGCTCCCCGGGGGTCAGT
GGGGCTGCTGGCGCGGCTGAAGGCTAACACGCCGCTGACACCGCAAAACA
TGTACGTATGGAGGGGAGGAGGGTAGATGCACAGAGACACGGACGGCCAG
GGCATTTCCTGTCCCTCCATGCTGACCTGGCAGTGCTGGTGGCCCTTCTT
GCCCAGCGCGCTGCTCTGTCTCCTTGCCCCTTCTCACCACACTTCTGGCT
TATCCATACCACGGAATCACACAGGCACGGATGCGTTTCTTATAATTAAG
AGCAAGGAGAGGAATTTCGATGTGCTCCATTACCGGTTCAAGACGGCCAC
GGAGACCAACTCCCTGCGCTTTGAAGGACACAGCTTGCGGGTGTTTGATA
TAAAATCGGCCATCGTCGCAGAGAAGCGGCTGGACAAAGGCCTAGATTTC
GATTTAGAGCTTTCTAACCCACAGACTAAGGAAGTATATCTTGACGAAAC
CAAGTCCATCGACAAGAACAGCACCGTGCTAGTAAAGCGTGTGGCGGCTC
CCCGGGGGTCAGTGGGGCTGCTGGCGCGGCTGAAGGCTAACACGCCGCTG
ACACCGCAAAACATGTACGTATGGAGGGGAGGAGGGTAGATGCACAGAGA
CACGGACGGCCAGGGCATTTCCTGTCCCTCCATGCTGACCTGGCAGTGCT
GGTGGCCCTTCTTGCCCAGCGCGCTGCTCTGTCTCCTTGCCCCTTCTCAC
CACACTTCTGGCTTATCCATACCACGGAATCACACAGGCACGGATGCGTT
TCTTATAATTAAGAGCAAGGAGAGGAATTTCGATGTGCTCCATTACCGGT
TCAAGACGGCCACGGAGACCAACTCCCTGCGCTTTGAAGGACACAGCTTG
CGGGTGTTTGATATAAAATCGGCCATCGTCGCAGAGAAGCGGCTGGACAA
AGGCCTAGATTTCGATTTAGAGCTTTCTAACCCACAGACTAAGGAAGTAT
ATCTTGACGAAACCAAGTCCATCGACAAGAACAGCACCGTGCTAGTAAAG
CGTGTGGCGGCTCCCCGGGGGTCAGTGGGGCTGCTGGCGCGGCTGAAGGC
TAACACGCCGCTGACACCGCAAAACATGTACGTATGGAGGGGAGGAGGGT
AGATGCACAGAGACACGGACGGCCAGGGCATTTCCTGTCCCTCCATGCTG
ACCTGGCAGTGCTGGTGGCCCTTCTTGCCCAGCGCGCTGCTCTGTCTCCT
TGCCCCTTCTCACCACACTTCTGGCTTATCCATACCACGGAATCACACAG
GCACGGATGCGTTTCTTATAATTAAGAGCAAGGAGAGGAATTTCGATGTG
CTCCATTACCGGTTCAAGACGGCCACGGAGACCAACTCCCTGCGCTTTGA
AGGACACAGCTTGCGGGTGTTTGATATAAAATCGGCCATCGTCGCAGAGA
AGCGGCTGGACAAAGGCCTAGATTTCGATTTAGAGCTTTCTAACCCACAG
ACTAAGGAAGTATATCTTGACGAAACCAAGTCCATCGACAAGAACAGCAC
CGTGCTAGTAAAGCGTGTGGCGGCTCCCCGGGGGTCAGTGGGGCTGCTGG
CGCGGCTGAAGGCTAACACGCCGCTGACACCGCAAAACATGTACGTATGG
AGGGGAGGAGGGTAG
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Synonyms
Publications