jgi.p|Nanoce1779_2|600965, mRNA_8019 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600965
Unique Name	mRNA_8019
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2537
Alignment location	scaffold_22:458913..461650 -

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Properties


Property Name	Value
TranscriptId	601051
Track	FilteredModels2
ProteinId	600965

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:458913..461650 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600965	gene_8019	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600965	mRNA_8019-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8019	CDS_8019	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:458913..461650-
coding sequence from alignment at scaffold_22:458913..461650-

mRNA sequence

>mRNA_8019 ID=mRNA_8019|Name=jgi.p|Nanoce1779_2|600965|organism=Nannochloropsis oceanica|type=mRNA|length=2537bp
CAGTTCCTACGCCCAAGGCCGCTGCACCGGAGAAGAGCAAGCCCCCCGCA
AGGAAGTACGGCCTTCCAGCGCGCCGCTGCTGTCGTTGCTACAGGTTTGA
AAATGACATCGTTTGCAGCATAGAACGAGTGTCGATTCTTGATATTTTAT
TCCTAAGCATCGGCGCAGGATGGGAGCTAGAGGCGGATGGGACGAAAACG
GCAACGAGGGCATCTCATCTGCCCTAACAAGACGGTGGGGACATAAGACA
TTCTTAATGGTAGCCATAGCACTGTACTTCATGGGTGGGTTTTGTATCCT
GTCCTCCTTCACCGGCCGAGAGGTGACGACCATTCTAGAACAAACCAGCC
TCTTCCAGTCCCCGCAGCTCATAACGGAGCGCCAGACAACAGGAACATTT
GAAAGCGAGGGTCTTGCTGCCGGTATACCGAGCCCATTAGACGAGGAAGA
TGACCCGACAGACTGGGACGTGGATGGGCCCCGGCGGCCTCCAGGAGCTG
CGAGCATACCGCAAGGCAAGCACCCTCACAACCCTGAGAAAGACCGCCCC
GAGGCGTTCCAGCGTTGTGGTGACTGGCAAGAAGAGTACATGGAACTGCA
CCGTCAGATCCTGGCGGGCGAAAGGCCGCCGCGCTATCTCGTGGCAGTCC
TAAGCCAATCGGGCTTGGCCGACCAGATTGTGGGAGTAATGTCCTTGTTC
TTTTGGGCCTTGCTCACAGGCCGGGCCTTTCAAATAACTGTGGGTGAGCA
GCCCATTCCGCCGCTTGAGGCCGCATTCGACGCCCCTTATGTCAATTGGA
CGCGGCCTGCGGGGGATCCCTTGGTTTTGACCCAGCATCTGTACCGACCC
TTTAAGGGAAAACGCCGATACCCAAAAGTACATGCGCTGGTGCCCAACAT
TCAAGAGTACGGCAGTATGTACCTGATCAACAATAAAAGCGACTTCTTTG
CCACCAAAGACCTCAACACGCTTCCTCTCGACGGCGGGGCCGACAAGCCC
GTGCTCTTCATGGCCTCGAATCGTGGTCGAGTCTTTAGGTTATTTGATAA
CCCTCACCATCGCCGGAAGCTCTTTGACATGGGTCTCCGGCCAGAAACTG
CCTTTGCTTGTGGATTTCGTTTCTTGTTTGCGCCCAACGCCATGACGAGA
GATGAGACGGGCTGGCAACTCGCTGAAGAGTATCTCCTCCCAGGGAATTT
TCCCGATGATGACGATGAGCAAGAAAAGAGTCTTGCGCTTGCCGAAAACG
TGCTACGGATAGGTATACAGATCCGTGTGGGTGATTTTGTTTTTAACACG
CCGGGTAAGGCCCAAGCTCTCCAGCTTCAGGATTACATGGCCTACTTTGA
TTGTGCGCGAGAGATCGAGAAACACAAGAGGACCGTCACAACGAGCAAAG
TCATATGGTACCTGGTCTCGGATTCGCAACGGCTCAAGGAGCTAGCCTTG
GATAAGTTCGGGCCAGACCTGCTCGTGACTTCGACGGAGCCCAGCCGACA
CGTTCTGTGCGTTAAGGATGGACTGACCGACTGCAACGAAAGTGACGACA
TGGCCGACAGTCTGGCTGCGGCGGCCGCGGATATGATGGGCTTGGCCGAG
ACAGACTACATCATTTTGACGCACAAATCAGGGTTTGGCAAGGTGGCTGC
TTGGTTGAACATGCGCTGGCACAACGTCTGGTGGCTTGCTCCGGGGGAGC
CCAAGCCAAGTGTCTGCGGGCCCCGAGCATACGTGCAATTGGAGCAAATG
GCCGATAAGTGGAGCGGGCTGTAGTGAAGAAAGGGGAAAAGAGGTAATCA
AAGCTGTCAACCAAGGACGGAATGGGAAAAATGAGGTATGCATATCGATG
GTGAGACGTTGGTGGGAATATCAGAAGAGAAAAGGTCGCGAGGAGGAAGA
AGTCTGTGGGTCAGGATATAATGGCTTGGAGTTGAATGAAGAAGCGACGG
ACAAAAGAGATACCGTCCATTTTTGTGTCTTCTCCGGCAATCCAGGGAGG
AACGGGTATAAGCAAATGGTGCTTGCTGCCGAGATGCGTTGTGGAAGGGG
GAGATGGAAGCATTCAAGATGATTGTAGGTAAGTTTAGGTAGCGAAGGTA
TACAAATATAAGCTCGAACAACAATTACCCCCGCCGACCCTTATGAGGAT
TAACGAAGGAGGTCGCCGCGTCGCAGGGTAAAAATTTATACAAAGTATTC
CGCATTCGTAACGAGAAGTGTACACGCTTTCGCGTGAGATTTAGGAGTCA
CGCCGACAAGGAATAGAAAAAGAGGACAGTCATCAAAGGCTTACAAAATT
TTTCAGGCGTCCGCATCAGTGTTGGTATCGGATGTCTCATAAGCTCTTGG
CCTTCTTCTCTCTCTTTCCTCGTCTTTTTTGCGCGCTTGCCTTTCATCCT
CTGCTCTTTCCTTCATCGCTCATAATAGCTGAAGGCGTTTCTGCCTCCCG
CTTCTTACTTGTCTTTAAAATTCAAATATATGTTTCTATGCTGTGAACTA
ATTCAAGCCACCAAAAGAAGTAGAATAGCTCGTCCTA

protein sequence of jgi.p|Nanoce1779_2|600965

>mRNA_8019-protein ID=mRNA_8019-protein|Name=jgi.p|Nanoce1779_2|600965|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MGARGGWDENGNEGISSALTRRWGHKTFLMVAIALYFMGGFCILSSFTGR
EVTTILEQTSLFQSPQLITERQTTGTFESEGLAAGIPSPLDEEDDPTDWD
VDGPRRPPGAASIPQGKHPHNPEKDRPEAFQRCGDWQEEYMELHRQILAG
ERPPRYLVAVLSQSGLADQIVGVMSLFFWALLTGRAFQITVGEQPIPPLE
AAFDAPYVNWTRPAGDPLVLTQHLYRPFKGKRRYPKVHALVPNIQEYGSM
YLINNKSDFFATKDLNTLPLDGGADKPVLFMASNRGRVFRLFDNPHHRRK
LFDMGLRPETAFACGFRFLFAPNAMTRDETGWQLAEEYLLPGNFPDDDDE
QEKSLALAENVLRIGIQIRVGDFVFNTPGKAQALQLQDYMAYFDCAREIE
KHKRTVTTSKVIWYLVSDSQRLKELALDKFGPDLLVTSTEPSRHVLCVKD
GLTDCNESDDMADSLAAAAADMMGLAETDYIILTHKSGFGKVAAWLNMRW
HNVWWLAPGEPKPSVCGPRAYVQLEQMADKWSGL*

mRNA from alignment at scaffold_22:458913..461650-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8019 ID=mRNA_8019|Name=jgi.p|Nanoce1779_2|600965|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp|location=Sequence derived from alignment at scaffold_22:458913..461650- (Nannochloropsis oceanica)
CAGTTCCTACGCCCAAGGCCGCTGCACCGGAGAAGAGCAAGCCCCCCGCA
AGGAAGTACGGTGGGTACCTCATTTAATTAACTTCCCTTTCTCCTATTTC
ACTCCCTCACTGTCGGTTTTGTTGATGGTTTGTGGCAGTCGGCGCCTGCC
CTCTCTCTATCCTTCTCCCATCATCGTCGTTCCAGGCAACACCATTTTAC
AGTCGCCAAGAAACCCTCTCATAGCCACAAATACGTGCCACCATTCAACA
TATTCAACCAGGCCTTCCAGCGCGCCGCTGCTGTCGTTGCTACAGGTTTG
AAAATGACATCGTTTGCAGCATAGAACGAGTGTCGATTCTTGATATTTTA
TTCCTAAGCATCGGCGCAGGATGGGAGCTAGAGGCGGATGGGACGAAAAC
GGCAACGAGGGCATCTCATCTGCCCTAACAAGACGGTGGGGACATAAGAC
ATTCTTAATGGTAGCCATAGCACTGTACTTCATGGGTGGGTTTTGTATCC
TGTCCTCCTTCACCGGCCGAGAGGTGACGACCATTCTAGAACAAACCAGC
CTCTTCCAGTCCCCGCAGCTCATAACGGAGCGCCAGACAACAGGAACATT
TGAAAGCGAGGGTCTTGCTGCCGGTATACCGAGCCCATTAGACGAGGAAG
ATGACCCGACAGACTGGGACGTGGATGGGCCCCGGCGGCCTCCAGGAGCT
GCGAGCATACCGCAAGGCAAGCACCCTCACAACCCTGAGAAAGACCGCCC
CGAGGCGTTCCAGCGTTGTGGTGACTGGCAAGAAGAGTACATGGAACTGC
ACCGTCAGATCCTGGCGGGCGAAAGGCCGCCGCGCTATCTCGTGGCAGTC
CTAAGCCAATCGGGCTTGGCCGACCAGATTGTGGGAGTAATGTCCTTGTT
CTTTTGGGCCTTGCTCACAGGCCGGGCCTTTCAAATAACTGTGGGTGAGC
AGCCCATTCCGCCGCTTGAGGCCGCATTCGACGCCCCTTATGTCAATTGG
ACGCGGCCTGCGGGGGATCCCTTGGTTTTGACCCAGCATCTGTACCGACC
CTTTAAGGGAAAACGCCGATACCCAAAAGTACATGCGCTGGTGCCCAACA
TTCAAGAGTACGGCAGTATGTACCTGATCAACAATAAAAGCGACTTCTTT
GCCACCAAAGACCTCAACACGCTTCCTCTCGACGGCGGGGCCGACAAGCC
CGTGCTCTTCATGGCCTCGAATCGTGGTCGAGTCTTTAGGTTATTTGATA
ACCCTCACCATCGCCGGAAGCTCTTTGACATGGGTCTCCGGCCAGAAACT
GCCTTTGCTTGTGGATTTCGTTTCTTGTTTGCGCCCAACGCCATGACGAG
AGATGAGACGGGCTGGCAACTCGCTGAAGAGTATCTCCTCCCAGGGAATT
TTCCCGATGATGACGATGAGCAAGAAAAGAGTCTTGCGCTTGCCGAAAAC
GTGCTACGGATAGGTATACAGATCCGTGTGGGTGATTTTGTTTTTAACAC
GCCGGGTAAGGCCCAAGCTCTCCAGCTTCAGGATTACATGGCCTACTTTG
ATTGTGCGCGAGAGATCGAGAAACACAAGAGGACCGTCACAACGAGCAAA
GTCATATGGTACCTGGTCTCGGATTCGCAACGGCTCAAGGAGCTAGCCTT
GGATAAGTTCGGGCCAGACCTGCTCGTGACTTCGACGGAGCCCAGCCGAC
ACGTTCTGTGCGTTAAGGATGGACTGACCGACTGCAACGAAAGTGACGAC
ATGGCCGACAGTCTGGCTGCGGCGGCCGCGGATATGATGGGCTTGGCCGA
GACAGACTACATCATTTTGACGCACAAATCAGGGTTTGGCAAGGTGGCTG
CTTGGTTGAACATGCGCTGGCACAACGTCTGGTGGCTTGCTCCGGGGGAG
CCCAAGCCAAGTGTCTGCGGGCCCCGAGCATACGTGCAATTGGAGCAAAT
GGCCGATAAGTGGAGCGGGCTGTAGTGAAGAAAGGGGAAAAGAGGTAATC
AAAGCTGTCAACCAAGGACGGAATGGGAAAAATGAGGTATGCATATCGAT
GGTGAGACGTTGGTGGGAATATCAGAAGAGAAAAGGTCGCGAGGAGGAAG
AAGTCTGTGGGTCAGGATATAATGGCTTGGAGTTGAATGAAGAAGCGACG
GACAAAAGAGATACCGTCCATTTTTGTGTCTTCTCCGGCAATCCAGGGAG
GAACGGGTATAAGCAAATGGTGCTTGCTGCCGAGATGCGTTGTGGAAGGG
GGAGATGGAAGCATTCAAGATGATTGTAGGTAAGTTTAGGTAGCGAAGGT
ATACAAATATAAGCTCGAACAACAATTACCCCCGCCGACCCTTATGAGGA
TTAACGAAGGAGGTCGCCGCGTCGCAGGGTAAAAATTTATACAAAGTATT
CCGCATTCGTAACGAGAAGTGTACACGCTTTCGCGTGAGATTTAGGAGTC
ACGCCGACAAGGAATAGAAAAAGAGGACAGTCATCAAAGGCTTACAAAAT
TTTTCAGGCGTCCGCATCAGTGTTGGTATCGGATGTCTCATAAGCTCTTG
GCCTTCTTCTCTCTCTTTCCTCGTCTTTTTTGCGCGCTTGCCTTTCATCC
TCTGCTCTTTCCTTCATCGCTCATAATAGCTGAAGGCGTTTCTGCCTCCC
GCTTCTTACTTGTCTTTAAAATTCAAATATATGTTTCTATGCTGTGAACT
AATTCAAGCCACCAAAAGAAGTAGAATAGCTCGTCCTA

Coding sequence (CDS) from alignment at scaffold_22:458913..461650-

>mRNA_8019 ID=mRNA_8019|Name=jgi.p|Nanoce1779_2|600965|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at scaffold_22:458913..461650- (Nannochloropsis oceanica)
ATGGGAGCTAGAGGCGGATGGGACGAAAACGGCAACGAGGGCATCTCATC
TGCCCTAACAAGACGGTGGGGACATAAGACATTCTTAATGGTAGCCATAG
CACTGTACTTCATGGGTGGGTTTTGTATCCTGTCCTCCTTCACCGGCCGA
GAGGTGACGACCATTCTAGAACAAACCAGCCTCTTCCAGTCCCCGCAGCT
CATAACGGAGCGCCAGACAACAGGAACATTTGAAAGCGAGGGTCTTGCTG
CCGGTATACCGAGCCCATTAGACGAGGAAGATGACCCGACAGACTGGGAC
GTGGATGGGCCCCGGCGGCCTCCAGGAGCTGCGAGCATACCGCAAGGCAA
GCACCCTCACAACCCTGAGAAAGACCGCCCCGAGGCGTTCCAGCGTTGTG
GTGACTGGCAAGAAGAGTACATGGAACTGCACCGTCAGATCCTGGCGGGC
GAAAGGCCGCCGCGCTATCTCGTGGCAGTCCTAAGCCAATCGGGCTTGGC
CGACCAGATTGTGGGAGTAATGTCCTTGTTCTTTTGGGCCTTGCTCACAG
GCCGGGCCTTTCAAATAACTGTGGGTGAGCAGCCCATTCCGCCGCTTGAG
GCCGCATTCGACGCCCCTTATGTCAATTGGACGCGGCCTGCGGGGGATCC
CTTGGTTTTGACCCAGCATCTGTACCGACCCTTTAAGGGAAAACGCCGAT
ACCCAAAAGTACATGCGCTGGTGCCCAACATTCAAGAGTACGGCAGTATG
TACCTGATCAACAATAAAAGCGACTTCTTTGCCACCAAAGACCTCAACAC
GCTTCCTCTCGACGGCGGGGCCGACAAGCCCGTGCTCTTCATGGCCTCGA
ATCGTGGTCGAGTCTTTAGGTTATTTGATAACCCTCACCATCGCCGGAAG
CTCTTTGACATGGGTCTCCGGCCAGAAACTGCCTTTGCTTGTGGATTTCG
TTTCTTGTTTGCGCCCAACGCCATGACGAGAGATGAGACGGGCTGGCAAC
TCGCTGAAGAGTATCTCCTCCCAGGGAATTTTCCCGATGATGACGATGAG
CAAGAAAAGAGTCTTGCGCTTGCCGAAAACGTGCTACGGATAGGTATACA
GATCCGTGTGGGTGATTTTGTTTTTAACACGCCGGGTAAGGCCCAAGCTC
TCCAGCTTCAGGATTACATGGCCTACTTTGATTGTGCGCGAGAGATCGAG
AAACACAAGAGGACCGTCACAACGAGCAAAGTCATATGGTACCTGGTCTC
GGATTCGCAACGGCTCAAGGAGCTAGCCTTGGATAAGTTCGGGCCAGACC
TGCTCGTGACTTCGACGGAGCCCAGCCGACACGTTCTGTGCGTTAAGGAT
GGACTGACCGACTGCAACGAAAGTGACGACATGGCCGACAGTCTGGCTGC
GGCGGCCGCGGATATGATGGGCTTGGCCGAGACAGACTACATCATTTTGA
CGCACAAATCAGGGTTTGGCAAGGTGGCTGCTTGGTTGAACATGCGCTGG
CACAACGTCTGGTGGCTTGCTCCGGGGGAGCCCAAGCCAAGTGTCTGCGG
GCCCCGAGCATACGTGCAATTGGAGCAAATGGCCGATAAGTGGAGCGGGC
TGTAG

Synonyms

Publications