jgi.p|Nanoce1779_2|182846, mRNA_8016 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|182846
Unique NamemRNA_8016
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1015
Alignment locationscaffold_22:450773..451787 +

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Properties
Property NameValue
TranscriptId182932
TrackFilteredModels2
ProteinId182846
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:450773..451787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|182846gene_8016Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|182846mRNA_8016-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8016CDS_8016Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8016 ID=mRNA_8016|Name=jgi.p|Nanoce1779_2|182846|organism=Nannochloropsis oceanica|type=mRNA|length=1015bp
CCCACAGCCTCCTTCTAGCTTCTTTGCGTCACTTTTAATTTCGCTTTTTT
TCCTTCTTCATCTCTGTCGCGGAAACGACATGCCATGGGACGATCTAAGG
GACTCTCCCCGACGTCAGAGTGGGGATATGGTTTCTGTTTAGCAAGGCTA
TGACTATGACCCTCCCCTGGCTTAGATCTCGCAAATGTGCCGGCGCGTGC
ACCGTGATTTATATCCTGGAGTCTCAACAGGCAACTGCTGCTCGAGTAAA
CGAACGATTCTGGTCGATTACGCGTGTACCATTCATATACGGGTCGATTA
TGCCTACCGTTCGGGTAAATGTCGATGGTGGACCACTCAGGTCAGGTCAG
ATAGGCATATCAAGTAAACCGGACCGCGTATCACTACTAGTCATCAACAA
GACTTTTGTGCCGGCGATGTATATGCTCTTGGGCATGCCCAGAAATGTAA
TTTTGCTGTTGTTGTTGCTGCTGCAACTGTCCTCGCAGGTGCATCGGGTG
TTACTCCTACTTGTATTACCAGGCGTCGCTGGCATGGTTTTGGCTTCCAT
AGAGGGCATAATGAACAAGCTACGTGTCTTTCCTGGGAGGTATGTGGTGA
GAGGGGAAAGAATGAGCAAGGTCGACCTTGTTGCTTACCCTGTGTGGTAT
AGCATGCGTCCTTTGTGCAACGCTAGCCTGTCCTAGGCAGGGATATCGAG
TTTGGCAAGGGATAGTAATGCCTTAGCTGCCAAATATATACATTACATTT
AATAGATTACCGCAGAAACGGATAGAGATTGCCGCACCTCGGCTTGCGTC
GTCTTCGCCGCCTCGCTTAAACCAAGCACTGAAACGCCTGGGGAAGAATG
GCATCAAGAGCAGGCACATTACTTATAACAAGAATTAAATGATAGCGAGC
ACCACCTTTGTTCTTAGTTTGAGCCCTGCCCGTGTGTTCTGCGCCTTTGT
TTAGAGATATGAATGCAAGCAAGCAAGAAAGCTTCATCAGCATCATTTCA
TGCAACTCCCCCTGC
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protein sequence of jgi.p|Nanoce1779_2|182846

>mRNA_8016-protein ID=mRNA_8016-protein|Name=jgi.p|Nanoce1779_2|182846|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MTMTLPWLRSRKCAGACTVIYILESQQATAARVNERFWSITRVPFIYGSI
MPTVRVNVDGGPLRSGQIGISSKPDRVSLLVINKTFVPAMYMLLGMPRNV
ILLLLLLLQLSSQVHRVLLLLVLPGVAGMVLASIEGIMNKLRVFPGRYVV
RGERMSKVDLVAYPVWYSMRPLCNASLS*
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mRNA from alignment at scaffold_22:450773..451787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8016 ID=mRNA_8016|Name=jgi.p|Nanoce1779_2|182846|organism=Nannochloropsis oceanica|type=mRNA|length=1015bp|location=Sequence derived from alignment at scaffold_22:450773..451787+ (Nannochloropsis oceanica)
CCCACAGCCTCCTTCTAGCTTCTTTGCGTCACTTTTAATTTCGCTTTTTT
TCCTTCTTCATCTCTGTCGCGGAAACGACATGCCATGGGACGATCTAAGG
GACTCTCCCCGACGTCAGAGTGGGGATATGGTTTCTGTTTAGCAAGGCTA
TGACTATGACCCTCCCCTGGCTTAGATCTCGCAAATGTGCCGGCGCGTGC
ACCGTGATTTATATCCTGGAGTCTCAACAGGCAACTGCTGCTCGAGTAAA
CGAACGATTCTGGTCGATTACGCGTGTACCATTCATATACGGGTCGATTA
TGCCTACCGTTCGGGTAAATGTCGATGGTGGACCACTCAGGTCAGGTCAG
ATAGGCATATCAAGTAAACCGGACCGCGTATCACTACTAGTCATCAACAA
GACTTTTGTGCCGGCGATGTATATGCTCTTGGGCATGCCCAGAAATGTAA
TTTTGCTGTTGTTGTTGCTGCTGCAACTGTCCTCGCAGGTGCATCGGGTG
TTACTCCTACTTGTATTACCAGGCGTCGCTGGCATGGTTTTGGCTTCCAT
AGAGGGCATAATGAACAAGCTACGTGTCTTTCCTGGGAGGTATGTGGTGA
GAGGGGAAAGAATGAGCAAGGTCGACCTTGTTGCTTACCCTGTGTGGTAT
AGCATGCGTCCTTTGTGCAACGCTAGCCTGTCCTAGGCAGGGATATCGAG
TTTGGCAAGGGATAGTAATGCCTTAGCTGCCAAATATATACATTACATTT
AATAGATTACCGCAGAAACGGATAGAGATTGCCGCACCTCGGCTTGCGTC
GTCTTCGCCGCCTCGCTTAAACCAAGCACTGAAACGCCTGGGGAAGAATG
GCATCAAGAGCAGGCACATTACTTATAACAAGAATTAAATGATAGCGAGC
ACCACCTTTGTTCTTAGTTTGAGCCCTGCCCGTGTGTTCTGCGCCTTTGT
TTAGAGATATGAATGCAAGCAAGCAAGAAAGCTTCATCAGCATCATTTCA
TGCAACTCCCCCTGC
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Coding sequence (CDS) from alignment at scaffold_22:450773..451787+

>mRNA_8016 ID=mRNA_8016|Name=jgi.p|Nanoce1779_2|182846|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_22:450773..451787+ (Nannochloropsis oceanica)
ATGACTATGACCCTCCCCTGGCTTAGATCTCGCAAATGTGCCGGCGCGTG
CACCGTGATTTATATCCTGGAGTCTCAACAGGCAACTGCTGCTCGAGTAA
ACGAACGATTCTGGTCGATTACGCGTGTACCATTCATATACGGGTCGATT
ATGCCTACCGTTCGGGTAAATGTCGATGGTGGACCACTCAGGTCAGGTCA
GATAGGCATATCAAGTAAACCGGACCGCGTATCACTACTAGTCATCAACA
AGACTTTTGTGCCGGCGATGTATATGCTCTTGGGCATGCCCAGAAATGTA
ATTTTGCTGTTGTTGTTGCTGCTGCAACTGTCCTCGCAGGTGCATCGGGT
GTTACTCCTACTTGTATTACCAGGCGTCGCTGGCATGGTTTTGGCTTCCA
TAGAGGGCATAATGAACAAGCTACGTGTCTTTCCTGGGAGGTATGTGGTG
AGAGGGGAAAGAATGAGCAAGGTCGACCTTGTTGCTTACCCTGTGTGGTA
TAGCATGCGTCCTTTGTGCAACGCTAGCCTGTCCTAG
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Synonyms
Publications