jgi.p|Nanoce1779_2|183185, mRNA_8015 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|183185
Unique NamemRNA_8015
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length695
Alignment locationscaffold_22:446043..446914 +

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Properties
Property NameValue
TranscriptId183271
TrackFilteredModels2
ProteinId183185
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:446043..446914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183185gene_8015Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183185mRNA_8015-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8015CDS_8015Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8015 ID=mRNA_8015|Name=jgi.p|Nanoce1779_2|183185|organism=Nannochloropsis oceanica|type=mRNA|length=695bp
CACCTCCAGCAACAGCACCAGCGCTATCGGCGGCGGCACCAGCACCATGA
AGATGCCTGGCCTTGCCTCGTCGGCGACAGCAATCCTCTTCGGATATGTC
TCCCTTACCGCCGCCCAAGAAGACCCCACCAGCCCATCTACCAGCAACAA
CAATCTTCGGTGGCGCCGCACACAGACGGTACGAGGAAGTGAGGGAGTGA
GGGAGGGAGGGACTAAAGGTTTGTCACTGGATCAATCAGGTGCGGCGTTG
CCATGCGTGGTAGCTAGAGGAGGAGGGGTGAGCGTAGAAGGAGAGGGAGG
GAGGAGGACTAGAAGACATGAAGAGAAGCTTGTGGTGATGCCCTGGGCTG
CCGTGGGTAGAGTAAGAGTGCCCTCCTTACCCCGCCTTCAATCCCTCCCT
CCCTGCCCTCTTCCCTCCCTCCCTCTCTCCCTAGAGCATTCCCCGCCAAG
ACACGCGGCACGGCCTGCTGGTATCCGATCTGCTCATAGACCCGACCATG
TCCTACTCCGGTGGTGAGGAGGGAGGAAGAGAGGGAGAGAGGGGGGGAGA
GAGGGCGGGCATATGCCTTCGGGACGGAGGCAGGGAAGGAGGCAGGGAAG
GAGGAAGGGATGGCAAACCTTGCTATTAATTTCAGAAGCAGCACGGTAAC
AAATCTCAAATCTCTCTCTTCCCTCCTTCTTTCCTTCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|183185

>mRNA_8015-protein ID=mRNA_8015-protein|Name=jgi.p|Nanoce1779_2|183185|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MKMPGLASSATAILFGYVSLTAAQEDPTSPSTSNNNLRWRRTQTVRGSEG
VREGGTKGLSLDQSGAALPCVVARGGGVSVEGEGGRRTRRHEEKLVVMPW
AAVGRVRVPSLPRLQSLPPCPLPSLPLSLEHSPPRHAARPAGIRSAHRPD
HVLLRW*
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mRNA from alignment at scaffold_22:446043..446914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8015 ID=mRNA_8015|Name=jgi.p|Nanoce1779_2|183185|organism=Nannochloropsis oceanica|type=mRNA|length=872bp|location=Sequence derived from alignment at scaffold_22:446043..446914+ (Nannochloropsis oceanica)
CACCTCCAGCAACAGCACCAGCGCTATCGGCGGCGGCACCAGCACCATGA
AGATGCCTGGCCTTGCCTCGTCGGCGACAGCAATCCTCTTCGGGTGCGTA
CATCTCGGTCTACCCACCACAAATATGGTTGGGTTCGATTCGGTTTGATC
TACTTGCCTGTCTGCATACTTGTGAAGAAGATGGCGTTCGTGCTGTTCTT
GGATCCCTGACCCCTTAACCTCCCCCCCGTTTTTCCCTCCCCCCCCCCCC
CTTATTCGTTTGTGTCCAAGATATGTCTCCCTTACCGCCGCCCAAGAAGA
CCCCACCAGCCCATCTACCAGCAACAACAATCTTCGGTGGCGCCGCACAC
AGACGGTACGAGGAAGTGAGGGAGTGAGGGAGGGAGGGACTAAAGGTTTG
TCACTGGATCAATCAGGTGCGGCGTTGCCATGCGTGGTAGCTAGAGGAGG
AGGGGTGAGCGTAGAAGGAGAGGGAGGGAGGAGGACTAGAAGACATGAAG
AGAAGCTTGTGGTGATGCCCTGGGCTGCCGTGGGTAGAGTAAGAGTGCCC
TCCTTACCCCGCCTTCAATCCCTCCCTCCCTGCCCTCTTCCCTCCCTCCC
TCTCTCCCTAGAGCATTCCCCGCCAAGACACGCGGCACGGCCTGCTGGTA
TCCGATCTGCTCATAGACCCGACCATGTCCTACTCCGGTGGTGAGGAGGG
AGGAAGAGAGGGAGAGAGGGGGGGAGAGAGGGCGGGCATATGCCTTCGGG
ACGGAGGCAGGGAAGGAGGCAGGGAAGGAGGAAGGGATGGCAAACCTTGC
TATTAATTTCAGAAGCAGCACGGTAACAAATCTCAAATCTCTCTCTTCCC
TCCTTCTTTCCTTCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_22:446043..446914+

>mRNA_8015 ID=mRNA_8015|Name=jgi.p|Nanoce1779_2|183185|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_22:446043..446914+ (Nannochloropsis oceanica)
ATGAAGATGCCTGGCCTTGCCTCGTCGGCGACAGCAATCCTCTTCGGATA
TGTCTCCCTTACCGCCGCCCAAGAAGACCCCACCAGCCCATCTACCAGCA
ACAACAATCTTCGGTGGCGCCGCACACAGACGGTACGAGGAAGTGAGGGA
GTGAGGGAGGGAGGGACTAAAGGTTTGTCACTGGATCAATCAGGTGCGGC
GTTGCCATGCGTGGTAGCTAGAGGAGGAGGGGTGAGCGTAGAAGGAGAGG
GAGGGAGGAGGACTAGAAGACATGAAGAGAAGCTTGTGGTGATGCCCTGG
GCTGCCGTGGGTAGAGTAAGAGTGCCCTCCTTACCCCGCCTTCAATCCCT
CCCTCCCTGCCCTCTTCCCTCCCTCCCTCTCTCCCTAGAGCATTCCCCGC
CAAGACACGCGGCACGGCCTGCTGGTATCCGATCTGCTCATAGACCCGAC
CATGTCCTACTCCGGTGGTGAATGAAGATGCCTGGCCTTGCCTCGTCGGC
GACAGCAATCCTCTTCGGATATGTCTCCCTTACCGCCGCCCAAGAAGACC
CCACCAGCCCATCTACCAGCAACAACAATCTTCGGTGGCGCCGCACACAG
ACGGTACGAGGAAGTGAGGGAGTGAGGGAGGGAGGGACTAAAGGTTTGTC
ACTGGATCAATCAGGTGCGGCGTTGCCATGCGTGGTAGCTAGAGGAGGAG
GGGTGAGCGTAGAAGGAGAGGGAGGGAGGAGGACTAGAAGACATGAAGAG
AAGCTTGTGGTGATGCCCTGGGCTGCCGTGGGTAGAGTAAGAGTGCCCTC
CTTACCCCGCCTTCAATCCCTCCCTCCCTGCCCTCTTCCCTCCCTCCCTC
TCTCCCTAGAGCATTCCCCGCCAAGACACGCGGCACGGCCTGCTGGTATC
CGATCTGCTCATAGACCCGACCATGTCCTACTCCGGTGGTGA
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Synonyms
Publications