jgi.p|Nanoce1779_2|600950, mRNA_8014 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600950
Unique Name	mRNA_8014
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1158
Alignment location	scaffold_22:445126..446283 -

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Properties


Property Name	Value
TranscriptId	601036
Track	FilteredModels2
ProteinId	600950

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:445126..446283 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600950	gene_8014	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600950	mRNA_8014-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8014	CDS_8014	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:445126..446283-
coding sequence from alignment at scaffold_22:445126..446283-

mRNA sequence

>mRNA_8014 ID=mRNA_8014|Name=jgi.p|Nanoce1779_2|600950|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
GGGAGGGAAAAACGGGGGGGAGGTTAAGGGGTCAGGGATCCAAGAACAGC
ACGAACGCCATCTTCTTCACAAGTATGCAGACAGGCAAGTAGATCAAACC
GAATCGAACCCAACCATATTTGTGGTGGGTAGACCGAGATGTACGCACCC
GAAGAGGATTGCTGTCGCCGACGAGGCAAGGCCAGGCATCTTCATGGTGC
TGGTGCCGCCGCCGATAGCGCTGGTGCTGTTGCTGGAGGTGGTAGTGGTA
GCGGTAGTGATGAATGGGTGTGGGAAAGAAGGTTTACAATGGGGATAAAC
ATACTTAGCACAGCAGACACGGCTCCATACAGAACAATGTATGTCGGGCT
GGCTCGCACTTGAAGGACGATTGATGATAGCACGACGCACGCGTAAACCC
AGGGATCCTCAAAAGGGGGGGGGAGGCGAGGTCACACATGTGCGGTTGCT
TGTATTCAGTCAAAGCCGCTTATGTGAGAAGCAAGGACTACGAGCTAGTC
GCTAGCAATGGAGAATTTTCAATTATAATAAACGCGTCAAATCCGAAAAG
CAGGCAGGAAAGCAAACAAGCAAGGACGCACCAATGTTTTGGTCACGACG
ATCCTGCGTTAACTAAGAGAACCCGAAGGAAATGCCATACCGGCTATCAC
TTTTTATCGCTACTGTTGGTATATTTGCTTGTTTGTTCTCCTTGTGGCAT
CAAGGCTTTAACATGTGCATCCAAGAGTAGGTTGCATCCCGCAGGGAACA
GAGCAGAGCTCGCTTCACTCACTTTGGTGTTTTTCAGGCCTTTTTCTTCG
CTAATTGGCAACCTTAAAAAAGGGATAAGTTTTGCGGGTAATCGATCCAT
ATTGTAAGTCCTCAGAAATGAGTCATCTCTAGAGCAAGCGGTGACAGTGC
AAGCATGACAAAAAACTAAGCAACAAATCAAGGAATTTCTTTTCCCCTGG
AGCTTTGCTGAAGATTCCAGGTGGTATTTGGGAGGATTAAGGCAGTCCAT
CTGTGTTGACCGAAAAATTGTATCTGTCGTTGCAAACACGTCGAAACACT
CACAAACACTGGGAGCCGAGGCATGTACACAAAAAATACACTGTCAATTT
GTTGCTTTACAAGTTCCAGAGGCCATCTCGCAGAATCTTTTTTTTTCTGA
GAAACGCC

protein sequence of jgi.p|Nanoce1779_2|600950

>mRNA_8014-protein ID=mRNA_8014-protein|Name=jgi.p|Nanoce1779_2|600950|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
ILKRGGEARSHMCGCLYSVKAAYVRSKDYELVASNGEFSIIINASNPKSR
QESKQARTHQCFGHDDPALTKRTRRKCHTGYHFLSLLLVYLLVCSPCGIK
ALTCASKSRLHPAGNRAELASLTLVFFRPFSSLIGNLKKGISFAGNRSIL
*

mRNA from alignment at scaffold_22:445126..446283-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8014 ID=mRNA_8014|Name=jgi.p|Nanoce1779_2|600950|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp|location=Sequence derived from alignment at scaffold_22:445126..446283- (Nannochloropsis oceanica)
GGGAGGGAAAAACGGGGGGGAGGTTAAGGGGTCAGGGATCCAAGAACAGC
ACGAACGCCATCTTCTTCACAAGTATGCAGACAGGCAAGTAGATCAAACC
GAATCGAACCCAACCATATTTGTGGTGGGTAGACCGAGATGTACGCACCC
GAAGAGGATTGCTGTCGCCGACGAGGCAAGGCCAGGCATCTTCATGGTGC
TGGTGCCGCCGCCGATAGCGCTGGTGCTGTTGCTGGAGGTGGTAGTGGTA
GCGGTAGTGATGAATGGGTGTGGGAAAGAAGGTTTACAATGGGGATAAAC
ATACTTAGCACAGCAGACACGGCTCCATACAGAACAATGTATGTCGGGCT
GGCTCGCACTTGAAGGACGATTGATGATAGCACGACGCACGCGTAAACCC
AGGGATCCTCAAAAGGGGGGGGGAGGCGAGGTCACACATGTGCGGTTGCT
TGTATTCAGTCAAAGCCGCTTATGTGAGAAGCAAGGACTACGAGCTAGTC
GCTAGCAATGGAGAATTTTCAATTATAATAAACGCGTCAAATCCGAAAAG
CAGGCAGGAAAGCAAACAAGCAAGGACGCACCAATGTTTTGGTCACGACG
ATCCTGCGTTAACTAAGAGAACCCGAAGGAAATGCCATACCGGCTATCAC
TTTTTATCGCTACTGTTGGTATATTTGCTTGTTTGTTCTCCTTGTGGCAT
CAAGGCTTTAACATGTGCATCCAAGAGTAGGTTGCATCCCGCAGGGAACA
GAGCAGAGCTCGCTTCACTCACTTTGGTGTTTTTCAGGCCTTTTTCTTCG
CTAATTGGCAACCTTAAAAAAGGGATAAGTTTTGCGGGTAATCGATCCAT
ATTGTAAGTCCTCAGAAATGAGTCATCTCTAGAGCAAGCGGTGACAGTGC
AAGCATGACAAAAAACTAAGCAACAAATCAAGGAATTTCTTTTCCCCTGG
AGCTTTGCTGAAGATTCCAGGTGGTATTTGGGAGGATTAAGGCAGTCCAT
CTGTGTTGACCGAAAAATTGTATCTGTCGTTGCAAACACGTCGAAACACT
CACAAACACTGGGAGCCGAGGCATGTACACAAAAAATACACTGTCAATTT
GTTGCTTTACAAGTTCCAGAGGCCATCTCGCAGAATCTTTTTTTTTCTGA
GAAACGCC

Coding sequence (CDS) from alignment at scaffold_22:445126..446283-

>mRNA_8014 ID=mRNA_8014|Name=jgi.p|Nanoce1779_2|600950|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_22:445126..446283- (Nannochloropsis oceanica)
ATCCTCAAAAGGGGGGGGGAGGCGAGGTCACACATGTGCGGTTGCTTGTA
TTCAGTCAAAGCCGCTTATGTGAGAAGCAAGGACTACGAGCTAGTCGCTA
GCAATGGAGAATTTTCAATTATAATAAACGCGTCAAATCCGAAAAGCAGG
CAGGAAAGCAAACAAGCAAGGACGCACCAATGTTTTGGTCACGACGATCC
TGCGTTAACTAAGAGAACCCGAAGGAAATGCCATACCGGCTATCACTTTT
TATCGCTACTGTTGGTATATTTGCTTGTTTGTTCTCCTTGTGGCATCAAG
GCTTTAACATGTGCATCCAAGAGTAGGTTGCATCCCGCAGGGAACAGAGC
AGAGCTCGCTTCACTCACTTTGGTGTTTTTCAGGCCTTTTTCTTCGCTAA
TTGGCAACCTTAAAAAAGGGATAAGTTTTGCGGGTAATCGATCCATATTG
TAA

Synonyms

Publications