jgi.p|Nanoce1779_2|632661, mRNA_8011 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632661
Unique NamemRNA_8011
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length879
Alignment locationscaffold_22:430621..431499 +

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Properties
Property NameValue
TranscriptId632747
TrackFilteredModels2
ProteinId632661
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:430621..431499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632661gene_8011Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632661mRNA_8011-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8011CDS_8011Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8011 ID=mRNA_8011|Name=jgi.p|Nanoce1779_2|632661|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGCGCCGTGCCTTCACGCTCACCGTCCTCGTGACCATTGCCAGCCTCTC
TGCCCTCTCATCCGCTGCCGACACCGACAAGACCATCTTTGACTCCAATC
CGAAGACTTTCACGTGTCCTGAATGTATTTGTGAGCCGGGTCCGAAAGGT
GATACCGGTCCTCAGGGTGAAACCGGTCCTCAGGGTGAGAAAGGTATGCA
GGGCGAGCAAGGTATCCAGGGCGACCAAGGTCCTGAGGGTCCAACAGGTC
CTATGGGTCCACGCGGGCCTCCTGGCAAGACCAAACACGAGTACTACTAC
GAGCCTCACCCCCACCAGGACAAGGAAGAGTACTACGGTGAGAAGAAGGG
ACACCATGATACCAGGAAGTACGCAAATGCGGAGAAGGGGCGCGAGGGGG
GGAAAGGCAACCACGGCTGGCACGAGGGGAATGGAGAGTACGAGCCTCAC
TACAGCTATGGCGACAAGAAGCACAAGAAGGGCTGGAAGCGCGATGATGT
TTACGATTCTTATGAAGCTGCCAAATACACGAAGGAGGGGAAGCACGAGC
GGGGCTATGGGGGAAAGGAGCACGGAACTGGTAGGAAGGGTGAATACCTG
CGCTAAAACGAGGACTAACTAAGCGTAAGCTCTGGGTGTGTGGGCCCAAG
GAACAAGAAATTTTCAAAGACTGACTGACTGTGATGTGGGAGGGAATAGA
GAACGGATCAATTATCAGAGACAGGGACTCCTATCGAGCTGCGAGGATGT
GATCTGCGAGCACTTATACGCAGCAGTCCATTCCGTTACAGGTAAAATCA
TCATTTCGCAGCGATTTTCTTCGACGTCATATTGTTGCTGTAGTAAGTAA
CCGAAGACAGCAAAGGAAACAAAAAAGCG
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protein sequence of jgi.p|Nanoce1779_2|632661

>mRNA_8011-protein ID=mRNA_8011-protein|Name=jgi.p|Nanoce1779_2|632661|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MRRAFTLTVLVTIASLSALSSAADTDKTIFDSNPKTFTCPECICEPGPKG
DTGPQGETGPQGEKGMQGEQGIQGDQGPEGPTGPMGPRGPPGKTKHEYYY
EPHPHQDKEEYYGEKKGHHDTRKYANAEKGREGGKGNHGWHEGNGEYEPH
YSYGDKKHKKGWKRDDVYDSYEAAKYTKEGKHERGYGGKEHGTGRKGEYL
R*
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mRNA from alignment at scaffold_22:430621..431499+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8011 ID=mRNA_8011|Name=jgi.p|Nanoce1779_2|632661|organism=Nannochloropsis oceanica|type=mRNA|length=879bp|location=Sequence derived from alignment at scaffold_22:430621..431499+ (Nannochloropsis oceanica)
ATGCGCCGTGCCTTCACGCTCACCGTCCTCGTGACCATTGCCAGCCTCTC
TGCCCTCTCATCCGCTGCCGACACCGACAAGACCATCTTTGACTCCAATC
CGAAGACTTTCACGTGTCCTGAATGTATTTGTGAGCCGGGTCCGAAAGGT
GATACCGGTCCTCAGGGTGAAACCGGTCCTCAGGGTGAGAAAGGTATGCA
GGGCGAGCAAGGTATCCAGGGCGACCAAGGTCCTGAGGGTCCAACAGGTC
CTATGGGTCCACGCGGGCCTCCTGGCAAGACCAAACACGAGTACTACTAC
GAGCCTCACCCCCACCAGGACAAGGAAGAGTACTACGGTGAGAAGAAGGG
ACACCATGATACCAGGAAGTACGCAAATGCGGAGAAGGGGCGCGAGGGGG
GGAAAGGCAACCACGGCTGGCACGAGGGGAATGGAGAGTACGAGCCTCAC
TACAGCTATGGCGACAAGAAGCACAAGAAGGGCTGGAAGCGCGATGATGT
TTACGATTCTTATGAAGCTGCCAAATACACGAAGGAGGGGAAGCACGAGC
GGGGCTATGGGGGAAAGGAGCACGGAACTGGTAGGAAGGGTGAATACCTG
CGCTAAAACGAGGACTAACTAAGCGTAAGCTCTGGGTGTGTGGGCCCAAG
GAACAAGAAATTTTCAAAGACTGACTGACTGTGATGTGGGAGGGAATAGA
GAACGGATCAATTATCAGAGACAGGGACTCCTATCGAGCTGCGAGGATGT
GATCTGCGAGCACTTATACGCAGCAGTCCATTCCGTTACAGGTAAAATCA
TCATTTCGCAGCGATTTTCTTCGACGTCATATTGTTGCTGTAGTAAGTAA
CCGAAGACAGCAAAGGAAACAAAAAAGCG
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Coding sequence (CDS) from alignment at scaffold_22:430621..431499+

>mRNA_8011 ID=mRNA_8011|Name=jgi.p|Nanoce1779_2|632661|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_22:430621..431499+ (Nannochloropsis oceanica)
ATGCGCCGTGCCTTCACGCTCACCGTCCTCGTGACCATTGCCAGCCTCTC
TGCCCTCTCATCCGCTGCCGACACCGACAAGACCATCTTTGACTCCAATC
CGAAGACTTTCACGTGTCCTGAATGTATTTGTGAGCCGGGTCCGAAAGGT
GATACCGGTCCTCAGGGTGAAACCGGTCCTCAGGGTGAGAAAGGTATGCA
GGGCGAGCAAGGTATCCAGGGCGACCAAGGTCCTGAGGGTCCAACAGGTC
CTATGGGTCCACGCGGGCCTCCTGGCAAGACCAAACACGAGTACTACTAC
GAGCCTCACCCCCACCAGGACAAGGAAGAGTACTACGGTGAGAAGAAGGG
ACACCATGATACCAGGAAGTACGCAAATGCGGAGAAGGGGCGCGAGGGGG
GGAAAGGCAACCACGGCTGGCACGAGGGGAATGGAGAGTACGAGCCTCAC
TACAGCTATGGCGACAAGAAGCACAAGAAGGGCTGGAAGCGCGATGATGT
TTACGATTCTTATGAAGCTGCCAAATACACGAAGGAGGGGAAGCACGAGC
GGGGCTATGGGGGAAAGGAGCACGGAACTGGTAGGAAGGGTGAATACCTG
CGCTAA
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Synonyms
Publications