jgi.p|Nanoce1779_2|574188, mRNA_801 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574188
Unique Name	mRNA_801
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2255
Alignment location	scaffold_2:462702..465118 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574274
Track	FilteredModels2
ProteinId	574188

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:462702..465118 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574188	gene_801	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574188	mRNA_801-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_801	CDS_801	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:462702..465118+
coding sequence from alignment at scaffold_2:462702..465118+

mRNA sequence

>mRNA_801 ID=mRNA_801|Name=jgi.p|Nanoce1779_2|574188|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp
AGGCCACTGTTTCGCCCTTACAACTACAATGGGTCTGCCAGGCTCGCAAC
GCCTTCGCCGCTGTCAAAAGCCTTCCACTATGCCTACCTCCTATCTGCTG
CAGGCCATGCTACTGCTCCTCTTGTGGCACACACCCCTGGCATTGGCCTT
CACCCTGCCTGCCTCGTCCTACCTCAAAATGGCCCTGAAGCCGGACTCCC
CCTCTCCCTTGACCGCCGTCTCACGCTCGGACCTGTTCAAGGGTGTGGGC
CTCGCTGGCTTGGGTGCGGCAGGAATCACTGGGGCAGGCATTACAGTTAA
GTCCGCCCAGGCTGAAGCTGACATGGTCGTGCGGCGTCCCATTTTGTCCG
AACGCATCTTCGACACGAAGCGGCGCTCGTTCTTGCCGGCCGAGATTAAT
CGCTTAATGCACAACAAGGCTCTGGACCAGCGGGTGGTTTGTATTGGGGA
GGTTCACAATGATGGGCTCCAGCACTACGCCGAGTACTCCATCTTGCAAG
CCGTCCACAAACGCCGAGGTGCTGCGGGTTTGACCGTGGGTCTGGAGATG
TTCTATCGACAACATCAGCCGATTCTGGATGAGTACGTCTTCGGGAAAGG
CACGCTGGCCTCGCTGAAGGAGGACACGAAATGGGATAAGACCTGGGGGC
ACAAAATGGCGTATTATGCGAAAATTTTTCAGTATGCAAAAGCGAATGGC
ATTCGTCTCTGCGGCCTTAATGTACCTCAGCCGGTGGTACAAGTGGTGAG
GCAGTTGGGTTTGGAGCACATCCCTGAGGATCTGCGACGGCGGTTGCCGG
CGGTGGTGGATTTGAGCAACGTTGCCCACCGCGAGGACTTCCTGGCGACG
ATGCGGTACTTTTCGCGTTTCCACGGGGGGGGCAGCAACGGGGGCGGGAT
CCCCGAGGAGGCATTGGAGCGACTCTACGAAGCCCAAACGCTGTGGGACG
AATATATGGCCGAAAGCGCCGTGCAAGTCCTGGAGGCCAATGCCGGTTCG
CGGATGATCGTCTTGGCGGGAACAAACCATATCCAGAACAGATATGGCGT
GCCTGATCGCATTACCCGCCGCTTGGGAGGGCAGCCGGTGTTCACCATTT
TGCCCGTATCGGTGGAGTTTGACGCGTTGACCTCCTTGCCGAAAATCGGG
GATGGGGAAAGTTTCTCCCCGAAGGTGGGGGATTGGATGTACTTCATTGA
GAAGGCCTGAAGGGGGGAGGGAAGGTGGCAAGGAGCGGAGGGAAGTTGAA
GAAGAGAAAGGCCAAGCTCTGTCTATGGTGTAGATATTTTGGAGGAAATC
TAGAATAAGGAATAGTTTCTATTTTTGTACCAGTGGTTTGTGTCCGTGCC
TAAGTGGAGAAATCATAGACCTGTTGGGAACCTGGTGAAATAATATTGCC
TTGGCCGAGAGAGGGAGGGAATAATGGAGAAGCGGGAGCGCTTCAACCTT
TGAGTTTTTCCGGTTGGCTGTAATGTGACGGACAGGAGGCAGGCTGAAGG
ATGAAGGGGGGTGTCGAGATGGCTTATGTGTCTCGACGGGTTAGATCAAG
AGTGTGAGTGTCAAGAAGAAGGGAGGACTTAAAATTTTCGGATAGGCAGG
TAATGTTATATGTATAAAAAAAAACATGATACGGGATGTTTTAAACAGAA
ATATCGCGGAAGCTCGGTAGTGTAAGCTTGAGGGAGAAGGAAGGATAGAT
GGACAGTGTACATGAAGGGCGTATTCTGTGAAATTATATTGACCACGCAG
GAAAGAAAATGAGTCGGGCGGTGATGGTTCGTGGAAAAAGAAGAGTAAGT
GTGTCTATACCAGCCTCGAAGTCATGTCATGACTGGGAGTTTTTCTGATT
TCTGTACGACGCAACAGAGACCTTTAACCACAGCGCTCAAGGATCTGGAT
CCGTCGTTATGCGCTCGGCACCAAGCAATGCATGTAGCCCACACCAAATG
CCCTATGCAAGGTACCAAAAGAAAGGAATTATAATCGTGCCGACGATTGT
TTGCAGTTCTTGATACGAGATATGCCCTGTGAGATTACCAATTTCATGAT
TATATGCATGTCGGGCTCGAATGTAGATGTAATATGTACAAAAATATGCC
CGAGCGCAAATTAAGGTTGCCTTGTTCGACGTAGAAATGAAAAGCGAAGG
TCGCTTTACGAGTACGGAGCTTTGACGTAGTTGAAAATGCTCCGCTTGCT
GCCACCAGCCAGGAAGTTGAAAGCTTCAGAGACCCATCGATTCCGGAAAA
TGTTG

protein sequence of jgi.p|Nanoce1779_2|574188

>mRNA_801-protein ID=mRNA_801-protein|Name=jgi.p|Nanoce1779_2|574188|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MGLPGSQRLRRCQKPSTMPTSYLLQAMLLLLLWHTPLALAFTLPASSYLK
MALKPDSPSPLTAVSRSDLFKGVGLAGLGAAGITGAGITVKSAQAEADMV
VRRPILSERIFDTKRRSFLPAEINRLMHNKALDQRVVCIGEVHNDGLQHY
AEYSILQAVHKRRGAAGLTVGLEMFYRQHQPILDEYVFGKGTLASLKEDT
KWDKTWGHKMAYYAKIFQYAKANGIRLCGLNVPQPVVQVVRQLGLEHIPE
DLRRRLPAVVDLSNVAHREDFLATMRYFSRFHGGGSNGGGIPEEALERLY
EAQTLWDEYMAESAVQVLEANAGSRMIVLAGTNHIQNRYGVPDRITRRLG
GQPVFTILPVSVEFDALTSLPKIGDGESFSPKVGDWMYFIEKA*

mRNA from alignment at scaffold_2:462702..465118+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_801 ID=mRNA_801|Name=jgi.p|Nanoce1779_2|574188|organism=Nannochloropsis oceanica|type=mRNA|length=2417bp|location=Sequence derived from alignment at scaffold_2:462702..465118+ (Nannochloropsis oceanica)
AGGCCACTGTTTCGCCCTTACAACTACAATGGGTCTGCCAGGCTCGCAAC
GCCTTCGCCGCTGTCAAAAGCCTTCCACTATGCCTACCTCCTATCTGCTG
CAGGCCATGCTACTGCTCCTCTTGTGGCACACACCCCTGGCATTGGCCTT
CACCCTGCCTGCCTCGTCCTACCTCAAAATGGCCCTGAAGCCGGACTCCC
CCTCTCCCTTGACCGCCGTCTCACGCTCGGACCTGTTCAAGGGTGTGGGC
CTCGCTGGCTTGGGTGCGGCAGGAATCACTGGGGCAGGCATTACAGTTAA
GTCCGCCCAGGCTGAAGCTGACATGGTCGTGCGGCGTCCCATTTTGTCCG
AACGCATCTTCGACACGAAGCGGCGCTCGTTCTTGCCGGCCGAGATTAAT
CGCTTAATGCACAACAAGGCTCTGGACCAGCGGGTGGTTTGTATTGGGGA
GGTTCACAATGATGGGCTCCAGCACTACGCCGAGTACTCCATCTTGCAAG
CCGTCCACAAACGCCGAGGTGCTGCGGGTTTGACCGTGGGTCTGGAGATG
TTCTATCGACAACATCAGCCGATTCTGGATGAGTACGTCTTCGGGAAAGG
CACGCTGGCCTCGCTGAAGGAGGACACGAAATGGGATAAGACCTGGGGGC
ACAAAATGGCGTATTATGCGAAAATTTTTCAGTATGCAAAAGCGAATGGC
ATTCGTCTCTGCGGCCTTAATGTACCTCAGCCGGTGGTACAAGTGGTGAG
GCAGTTGGGTTTGGAGCACATCCCTGAGGATCTGCGACGGCGGTTGCCGG
CGGTGGTGGATTTGAGGTACATAATGGAGGGAGGAGAGAGAGAGGGAATG
CATTAGGAAAGGATTGGAGGGTTGAATCGTGTGTCCCATGCTATTGTCTT
ACTACTCCCAGCGAGCCCAATCATTTCACCCGGCCCTCCCTTCATCTCAT
TCATACCCACCCACCCACACTCACACAGCAACGTTGCCCACCGCGAGGAC
TTCCTGGCGACGATGCGGTACTTTTCGCGTTTCCACGGGGGGGGCAGCAA
CGGGGGCGGGATCCCCGAGGAGGCATTGGAGCGACTCTACGAAGCCCAAA
CGCTGTGGGACGAATATATGGCCGAAAGCGCCGTGCAAGTCCTGGAGGCC
AATGCCGGTTCGCGGATGATCGTCTTGGCGGGAACAAACCATATCCAGAA
CAGATATGGCGTGCCTGATCGCATTACCCGCCGCTTGGGAGGGCAGCCGG
TGTTCACCATTTTGCCCGTATCGGTGGAGTTTGACGCGTTGACCTCCTTG
CCGAAAATCGGGGATGGGGAAAGTTTCTCCCCGAAGGTGGGGGATTGGAT
GTACTTCATTGAGAAGGCCTGAAGGGGGGAGGGAAGGTGGCAAGGAGCGG
AGGGAAGTTGAAGAAGAGAAAGGCCAAGCTCTGTCTATGGTGTAGATATT
TTGGAGGAAATCTAGAATAAGGAATAGTTTCTATTTTTGTACCAGTGGTT
TGTGTCCGTGCCTAAGTGGAGAAATCATAGACCTGTTGGGAACCTGGTGA
AATAATATTGCCTTGGCCGAGAGAGGGAGGGAATAATGGAGAAGCGGGAG
CGCTTCAACCTTTGAGTTTTTCCGGTTGGCTGTAATGTGACGGACAGGAG
GCAGGCTGAAGGATGAAGGGGGGTGTCGAGATGGCTTATGTGTCTCGACG
GGTTAGATCAAGAGTGTGAGTGTCAAGAAGAAGGGAGGACTTAAAATTTT
CGGATAGGCAGGTAATGTTATATGTATAAAAAAAAACATGATACGGGATG
TTTTAAACAGAAATATCGCGGAAGCTCGGTAGTGTAAGCTTGAGGGAGAA
GGAAGGATAGATGGACAGTGTACATGAAGGGCGTATTCTGTGAAATTATA
TTGACCACGCAGGAAAGAAAATGAGTCGGGCGGTGATGGTTCGTGGAAAA
AGAAGAGTAAGTGTGTCTATACCAGCCTCGAAGTCATGTCATGACTGGGA
GTTTTTCTGATTTCTGTACGACGCAACAGAGACCTTTAACCACAGCGCTC
AAGGATCTGGATCCGTCGTTATGCGCTCGGCACCAAGCAATGCATGTAGC
CCACACCAAATGCCCTATGCAAGGTACCAAAAGAAAGGAATTATAATCGT
GCCGACGATTGTTTGCAGTTCTTGATACGAGATATGCCCTGTGAGATTAC
CAATTTCATGATTATATGCATGTCGGGCTCGAATGTAGATGTAATATGTA
CAAAAATATGCCCGAGCGCAAATTAAGGTTGCCTTGTTCGACGTAGAAAT
GAAAAGCGAAGGTCGCTTTACGAGTACGGAGCTTTGACGTAGTTGAAAAT
GCTCCGCTTGCTGCCACCAGCCAGGAAGTTGAAAGCTTCAGAGACCCATC
GATTCCGGAAAATGTTG

Coding sequence (CDS) from alignment at scaffold_2:462702..465118+

>mRNA_801 ID=mRNA_801|Name=jgi.p|Nanoce1779_2|574188|organism=Nannochloropsis oceanica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_2:462702..465118+ (Nannochloropsis oceanica)
ATGGGTCTGCCAGGCTCGCAACGCCTTCGCCGCTGTCAAAAGCCTTCCAC
TATGCCTACCTCCTATCTGCTGCAGGCCATGCTACTGCTCCTCTTGTGGC
ACACACCCCTGGCATTGGCCTTCACCCTGCCTGCCTCGTCCTACCTCAAA
ATGGCCCTGAAGCCGGACTCCCCCTCTCCCTTGACCGCCGTCTCACGCTC
GGACCTGTTCAAGGGTGTGGGCCTCGCTGGCTTGGGTGCGGCAGGAATCA
CTGGGGCAGGCATTACAGTTAAGTCCGCCCAGGCTGAAGCTGACATGGTC
GTGCGGCGTCCCATTTTGTCCGAACGCATCTTCGACACGAAGCGGCGCTC
GTTCTTGCCGGCCGAGATTAATCGCTTAATGCACAACAAGGCTCTGGACC
AGCGGGTGGTTTGTATTGGGGAGGTTCACAATGATGGGCTCCAGCACTAC
GCCGAGTACTCCATCTTGCAAGCCGTCCACAAACGCCGAGGTGCTGCGGG
TTTGACCGTGGGTCTGGAGATGTTCTATCGACAACATCAGCCGATTCTGG
ATGAGTACGTCTTCGGGAAAGGCACGCTGGCCTCGCTGAAGGAGGACACG
AAATGGGATAAGACCTGGGGGCACAAAATGGCGTATTATGCGAAAATTTT
TCAGTATGCAAAAGCGAATGGCATTCGTCTCTGCGGCCTTAATGTACCTC
AGCCGGTGGTACAAGTGGTGAGGCAGTTGGGTTTGGAGCACATCCCTGAG
GATCTGCGACGGCGGTTGCCGGCGGTGGTGGATTTGAGCAACGTTGCCCA
CCGCGAGGACTTCCTGGCGACGATGCGGTACTTTTCGCGTTTCCACGGGG
GGGGCAGCAACGGGGGCGGGATCCCCGAGGAGGCATTGGAGCGACTCTAC
GAAGCCCAAACGCTGTGGGACGAATATATGGCCGAAAGCGCCGTGCAAGT
CCTGGAGGCCAATGCCGGTTCGCGGATGATCGTCTTGGCGGGAACAAACC
ATATCCAGAACAGATATGGCGTGCCTGATCGCATTACCCGCCGCTTGGGA
GGGCAGCCGGTGTTCACCATTTTGCCCGTATCGGTGGAGTTTGACGCGTT
GACCTCCTTGCCGAAAATCGGGGATGGGGAAAGTTTCTCCCCGAAGGTGG
GGGATTGGATGTACTTCATTGAGAAGGCCTGAATGGGTCTGCCAGGCTCG
CAACGCCTTCGCCGCTGTCAAAAGCCTTCCACTATGCCTACCTCCTATCT
GCTGCAGGCCATGCTACTGCTCCTCTTGTGGCACACACCCCTGGCATTGG
CCTTCACCCTGCCTGCCTCGTCCTACCTCAAAATGGCCCTGAAGCCGGAC
TCCCCCTCTCCCTTGACCGCCGTCTCACGCTCGGACCTGTTCAAGGGTGT
GGGCCTCGCTGGCTTGGGTGCGGCAGGAATCACTGGGGCAGGCATTACAG
TTAAGTCCGCCCAGGCTGAAGCTGACATGGTCGTGCGGCGTCCCATTTTG
TCCGAACGCATCTTCGACACGAAGCGGCGCTCGTTCTTGCCGGCCGAGAT
TAATCGCTTAATGCACAACAAGGCTCTGGACCAGCGGGTGGTTTGTATTG
GGGAGGTTCACAATGATGGGCTCCAGCACTACGCCGAGTACTCCATCTTG
CAAGCCGTCCACAAACGCCGAGGTGCTGCGGGTTTGACCGTGGGTCTGGA
GATGTTCTATCGACAACATCAGCCGATTCTGGATGAGTACGTCTTCGGGA
AAGGCACGCTGGCCTCGCTGAAGGAGGACACGAAATGGGATAAGACCTGG
GGGCACAAAATGGCGTATTATGCGAAAATTTTTCAGTATGCAAAAGCGAA
TGGCATTCGTCTCTGCGGCCTTAATGTACCTCAGCCGGTGGTACAAGTGG
TGAGGCAGTTGGGTTTGGAGCACATCCCTGAGGATCTGCGACGGCGGTTG
CCGGCGGTGGTGGATTTGAGCAACGTTGCCCACCGCGAGGACTTCCTGGC
GACGATGCGGTACTTTTCGCGTTTCCACGGGGGGGGCAGCAACGGGGGCG
GGATCCCCGAGGAGGCATTGGAGCGACTCTACGAAGCCCAAACGCTGTGG
GACGAATATATGGCCGAAAGCGCCGTGCAAGTCCTGGAGGCCAATGCCGG
TTCGCGGATGATCGTCTTGGCGGGAACAAACCATATCCAGAACAGATATG
GCGTGCCTGATCGCATTACCCGCCGCTTGGGAGGGCAGCCGGTGTTCACC
ATTTTGCCCGTATCGGTGGAGTTTGACGCGTTGACCTCCTTGCCGAAAAT
CGGGGATGGGGAAAGTTTCTCCCCGAAGGTGGGGGATTGGATGTACTTCA
TTGAGAAGGCCTGA

Synonyms

Publications