jgi.p|Nanoce1779_2|600924, mRNA_8009 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600924
Unique Name	mRNA_8009
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1229
Alignment location	scaffold_22:426610..428855 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601010
Track	FilteredModels2
ProteinId	600924

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:426610..428855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600924	gene_8009	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600924	mRNA_8009-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8009	CDS_8009	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:426610..428855+
coding sequence from alignment at scaffold_22:426610..428855+

mRNA sequence

>mRNA_8009 ID=mRNA_8009|Name=jgi.p|Nanoce1779_2|600924|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
ATGGCAGTTGATGACTTGATCGGTAGGGAGGAGGGAGGGGGAAAGAAAGA
GAGGGAAAGAAGGACGGAGGTAGAGGGATGATTGGGAAGGGAAGGAGAGG
GGGGAAGGCAAAAAGGGGAGGGAGAGGGAAGGAGGGAAAAAAGAGTGAGC
ATCTGAGGCAGCAAATGGATGACTTGATCGGTAGGGAGGTGGGTGAAGAG
TGAGAGAGGGAGAAAGGAAGAGAGGGAGATGATGGAAAAGGAGGCGGTGA
GAGAGAGCTGCAAGGACGATTACTCAATCTCTTTGGCCTTGCTTATCCTG
CTGCTGCTGCTCCTACTTCTACTGGTCCACTGTCACCACGCACCACTCAC
TGTATTCCTCGTTTTACACCTCGACCACTGGGCCATACAATGATATCTGT
AATAACAGGCGCGGACGTGGAGACGGGCGGCATTTTCGACCCCCTCAACT
TCAGCAAGGATGCCGACAAGCTCGACAAATTCCGCGCCGTTGAGCTCAAG
CACGGCCGCATTGCCATGCTCGGTGTGCTGGGCATCTGGATTCAGGCCGC
GGGCCTCCACCTCCCTGACCCCGTTTTTTCCAACCCCCGCCCCCTCGCTG
CCCTGGTCCAGGTATCGACCGAGCGCCCTCTGGCCCTTGTCCAGCTCTTG
GCTGCCATCACCTGGATCGAGCTCGTGGCCGGGAAGCAGAGCGAGAGCCA
GGCTCCGGGGGATCTCGCGAAATTCGGCAACCAGTTCAAGCCCGAGGATG
AGGAGGAGTACGCTGCCCTGCAGTTGAAGGAGCTCAAGAATGGCCGCCTG
GCCATGATTGCAAGCATGGGCCTTCTGGTCCAGGAGCTTGTCACGGGCCA
GGGCATTTGGGAGCAGCTGTCTTCCGGTAACGTCTGGGCTATCGGCGACG
GCAAGGGCCTCCTCTAAACGGTCGCTTGTTCTTTCGCTCTCAGTGTCCCT
CCCCCTCTCCTTCGTAAAGGCTGAGGAGGAGAGAGGAAAAGGGAGGGGAA
GAAGTGATTGCCTTGGGTGTGTTTTGTGGGTTCGAAGCGGGGGAGCGAGG
AAGGAGAGAGGGAGGGATGGCGTGCTTTTACTCTCTGCGGAGAGGATGGG
TGGCGCGCATCCTTCCAGATCCTAGTTTGGAGGAGGGAGGACAATAGAAA
GAAAAAAAGAAGAAAAGAAAATGACGTTCATAAGACACACATCATGTGTT
GAACTACTTTTCTTCTGTGTGTGATTTGA

protein sequence of jgi.p|Nanoce1779_2|600924

>mRNA_8009-protein ID=mRNA_8009-protein|Name=jgi.p|Nanoce1779_2|600924|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MISVITGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIW
IQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQ
SESQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQEL
VTGQGIWEQLSSGNVWAIGDGKGLL*

mRNA from alignment at scaffold_22:426610..428855+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8009 ID=mRNA_8009|Name=jgi.p|Nanoce1779_2|600924|organism=Nannochloropsis oceanica|type=mRNA|length=2246bp|location=Sequence derived from alignment at scaffold_22:426610..428855+ (Nannochloropsis oceanica)
ATGGCAGTTGATGACTTGATCGGTAGGGAGGAGGGAGGGGGAAAGAAAGA
GAGGGAAAGAAGGACGGAGGTAGAGGGATGATTGGGAAGGGAAGGAGAGG
GGGGAAGGCAAAAAGGGGAGGGAGAGGGAAGGAGGGAAAAAAGAGTGAGC
ATCTGAGGCAGCAAATGGATGACTTGATCGGTAGGGAGGTGGGTGAAGAG
TGAGAGAGGGAGAAAGGAAGAGAGGGAGATGATGGAAAAGGAGGCGGTGA
GAGAGAGCTGCAAGGACGATTACTCAATCTCTTTGGCCTTGCTTATCCTG
CTGCTGCTGCTCCTACTTCTACTGGTCCACTGTCACCACGCACCACTCAC
TGTATTCCTCGTTTTACACCTCGACCACTGGGCCATACAATGATATCTGT
AATAACAGGCGCGGACGTGGAGACGGGCGGCATTTTCGACCCCCTCAACT
TCAGCAAGGATGCCGACAAGCTCGACAAATTCCGCGCCGTTGAGCTCAAG
CACGGTGCGTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTC
TCTCCCTCCCTCCCTCCCCCCCTTCCTTCCTTCCTGGCGGGGGCCACTGG
ACAACAATGTCATCACCTGGGCTTCGAGACACGCATAGACTGACGACAAA
AGAATCAAACACCTTCTTGGCCTCTTCCTCCCCCTAATCTCCCCCATCCC
CCCCCTCCCTCAGGCCGCATTGCCATGCTCGGTGTGCTGGGCATCTGGAT
TCAGGCCGCGGGCCTCCACCTCCCTGACCCCGTTTTTTCCAACCCCCGCC
CCCTCGCTGCCCTGGTCCAGGTGAGGAGAGGGAGGGAGGGATGGATGGAT
GGAGGGAGGGAATAGAGGACTGTTGAGCCATACCTCTTGATTCTGCTGCT
GCTGCTGCTGCTGATGATGATGATGATGATGATGATGATGGTGATGATGA
GATGTTTGTCGTACTGCTGCTACTGCTGCTTCCCTCTTCGCCTCGTCCAG
CCTATTTTTGGGACGTCCTTATCCCCACTACCTCCTCTCGTACATCCAAT
GACCGACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCAGGTATCGACCGAGCGCCCTCTGGCCCTTGTCCAGCTCTTGGC
TGCCATCACCTGGATCGAGCTCGTGGCCGGGAAGCAGAGCGAGAGCCAGG
CTCCGGGGGATCTCGGTAGGGAGGGAGGGAGGGAGGGAGGGGATGTTGAC
GGGTGGGGGTCGAGGAGACGGGAAGAAGAGATCGGCACAAGATTATAGAG
AGTGTCAATAGAAGCTCATCAAACCGATACAGCCACCATTTTCACTCACC
CGCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCAGCGAAATTCGGC
AACCAGTTCAAGCCCGAGGATGAGGAGGAGTACGCTGCCCTGCAGGTAGG
AAGAGGGAGGGACGGAAGTGGAGAAGGAAAATCGTCACGGACTCTCATTC
GTCCTTTTTTTAATTTTCTCATCGATCCCTCATTCCCTCCTTCTGTCCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCC
CTCCTTAGTTGAAGGAGCTCAAGAATGGCCGCCTGGCCATGATTGCAAGC
ATGGGCCTTCTGGTCCAGGTGCGTTCCCTCCTCCCTCCCTCCCTCCCTCC
CTGCCTCCCTCCCTCCCCTTCTGCCCTCCTGCCCTTCCCTCCCCCTCTTG
CGTGCCTTTCCTTCCATCAAGCCCTCAAGTTATGACACTCATACATCTCT
ACTTCGCACGTCCACACGTCGCTCGCTCCCTTCCCGCCTCCCTCCTGCAG
GAGCTTGTCACGGGCCAGGGCATTTGGGAGCAGCTGTCTTCCGGTAACGT
CTGGGCTATCGGCGACGGCAAGGGCCTCCTCTAAACGGTCGCTTGTTCTT
TCGCTCTCAGTGTCCCTCCCCCTCTCCTTCGTAAAGGCTGAGGAGGAGAG
AGGAAAAGGGAGGGGAAGAAGTGATTGCCTTGGGTGTGTTTTGTGGGTTC
GAAGCGGGGGAGCGAGGAAGGAGAGAGGGAGGGATGGCGTGCTTTTACTC
TCTGCGGAGAGGATGGGTGGCGCGCATCCTTCCAGATCCTAGTTTGGAGG
AGGGAGGACAATAGAAAGAAAAAAAGAAGAAAAGAAAATGACGTTCATAA
GACACACATCATGTGTTGAACTACTTTTCTTCTGTGTGTGATTTGA

Coding sequence (CDS) from alignment at scaffold_22:426610..428855+

>mRNA_8009 ID=mRNA_8009|Name=jgi.p|Nanoce1779_2|600924|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_22:426610..428855+ (Nannochloropsis oceanica)
ATGATATCTGTAATAACAGGCGCGGACGTGGAGACGGGCGGCATTTTCGA
CCCCCTCAACTTCAGCAAGGATGCCGACAAGCTCGACAAATTCCGCGCCG
TTGAGCTCAAGCACGGCCGCATTGCCATGCTCGGTGTGCTGGGCATCTGG
ATTCAGGCCGCGGGCCTCCACCTCCCTGACCCCGTTTTTTCCAACCCCCG
CCCCCTCGCTGCCCTGGTCCAGGTATCGACCGAGCGCCCTCTGGCCCTTG
TCCAGCTCTTGGCTGCCATCACCTGGATCGAGCTCGTGGCCGGGAAGCAG
AGCGAGAGCCAGGCTCCGGGGGATCTCGCGAAATTCGGCAACCAGTTCAA
GCCCGAGGATGAGGAGGAGTACGCTGCCCTGCAGTTGAAGGAGCTCAAGA
ATGGCCGCCTGGCCATGATTGCAAGCATGGGCCTTCTGGTCCAGGAGCTT
GTCACGGGCCAGGGCATTTGGGAGCAGCTGTCTTCCGGTAACGTCTGGGC
TATCGGCGACGGCAAGGGCCTCCTCTAAATGATATCTGTAATAACAGGCG
CGGACGTGGAGACGGGCGGCATTTTCGACCCCCTCAACTTCAGCAAGGAT
GCCGACAAGCTCGACAAATTCCGCGCCGTTGAGCTCAAGCACGGCCGCAT
TGCCATGCTCGGTGTGCTGGGCATCTGGATTCAGGCCGCGGGCCTCCACC
TCCCTGACCCCGTTTTTTCCAACCCCCGCCCCCTCGCTGCCCTGGTCCAG
GTATCGACCGAGCGCCCTCTGGCCCTTGTCCAGCTCTTGGCTGCCATCAC
CTGGATCGAGCTCGTGGCCGGGAAGCAGAGCGAGAGCCAGGCTCCGGGGG
ATCTCGCGAAATTCGGCAACCAGTTCAAGCCCGAGGATGAGGAGGAGTAC
GCTGCCCTGCAGTTGAAGGAGCTCAAGAATGGCCGCCTGGCCATGATTGC
AAGCATGGGCCTTCTGGTCCAGGAGCTTGTCACGGGCCAGGGCATTTGGG
AGCAGCTGTCTTCCGGTAACGTCTGGGCTATCGGCGACGGCAAGGGCCTC
CTCTAAATGATATCTGTAATAACAGGCGCGGACGTGGAGACGGGCGGCAT
TTTCGACCCCCTCAACTTCAGCAAGGATGCCGACAAGCTCGACAAATTCC
GCGCCGTTGAGCTCAAGCACGGCCGCATTGCCATGCTCGGTGTGCTGGGC
ATCTGGATTCAGGCCGCGGGCCTCCACCTCCCTGACCCCGTTTTTTCCAA
CCCCCGCCCCCTCGCTGCCCTGGTCCAGGTATCGACCGAGCGCCCTCTGG
CCCTTGTCCAGCTCTTGGCTGCCATCACCTGGATCGAGCTCGTGGCCGGG
AAGCAGAGCGAGAGCCAGGCTCCGGGGGATCTCGCGAAATTCGGCAACCA
GTTCAAGCCCGAGGATGAGGAGGAGTACGCTGCCCTGCAGTTGAAGGAGC
TCAAGAATGGCCGCCTGGCCATGATTGCAAGCATGGGCCTTCTGGTCCAG
GAGCTTGTCACGGGCCAGGGCATTTGGGAGCAGCTGTCTTCCGGTAACGT
CTGGGCTATCGGCGACGGCAAGGGCCTCCTCTAAATGATATCTGTAATAA
CAGGCGCGGACGTGGAGACGGGCGGCATTTTCGACCCCCTCAACTTCAGC
AAGGATGCCGACAAGCTCGACAAATTCCGCGCCGTTGAGCTCAAGCACGG
CCGCATTGCCATGCTCGGTGTGCTGGGCATCTGGATTCAGGCCGCGGGCC
TCCACCTCCCTGACCCCGTTTTTTCCAACCCCCGCCCCCTCGCTGCCCTG
GTCCAGGTATCGACCGAGCGCCCTCTGGCCCTTGTCCAGCTCTTGGCTGC
CATCACCTGGATCGAGCTCGTGGCCGGGAAGCAGAGCGAGAGCCAGGCTC
CGGGGGATCTCGCGAAATTCGGCAACCAGTTCAAGCCCGAGGATGAGGAG
GAGTACGCTGCCCTGCAGTTGAAGGAGCTCAAGAATGGCCGCCTGGCCAT
GATTGCAAGCATGGGCCTTCTGGTCCAGGAGCTTGTCACGGGCCAGGGCA
TTTGGGAGCAGCTGTCTTCCGGTAACGTCTGGGCTATCGGCGACGGCAAG
GGCCTCCTCTAAATGATATCTGTAATAACAGGCGCGGACGTGGAGACGGG
CGGCATTTTCGACCCCCTCAACTTCAGCAAGGATGCCGACAAGCTCGACA
AATTCCGCGCCGTTGAGCTCAAGCACGGCCGCATTGCCATGCTCGGTGTG
CTGGGCATCTGGATTCAGGCCGCGGGCCTCCACCTCCCTGACCCCGTTTT
TTCCAACCCCCGCCCCCTCGCTGCCCTGGTCCAGGTATCGACCGAGCGCC
CTCTGGCCCTTGTCCAGCTCTTGGCTGCCATCACCTGGATCGAGCTCGTG
GCCGGGAAGCAGAGCGAGAGCCAGGCTCCGGGGGATCTCGCGAAATTCGG
CAACCAGTTCAAGCCCGAGGATGAGGAGGAGTACGCTGCCCTGCAGTTGA
AGGAGCTCAAGAATGGCCGCCTGGCCATGATTGCAAGCATGGGCCTTCTG
GTCCAGGAGCTTGTCACGGGCCAGGGCATTTGGGAGCAGCTGTCTTCCGG
TAACGTCTGGGCTATCGGCGACGGCAAGGGCCTCCTCTAAATGATATCTG
TAATAACAGGCGCGGACGTGGAGACGGGCGGCATTTTCGACCCCCTCAAC
TTCAGCAAGGATGCCGACAAGCTCGACAAATTCCGCGCCGTTGAGCTCAA
GCACGGCCGCATTGCCATGCTCGGTGTGCTGGGCATCTGGATTCAGGCCG
CGGGCCTCCACCTCCCTGACCCCGTTTTTTCCAACCCCCGCCCCCTCGCT
GCCCTGGTCCAGGTATCGACCGAGCGCCCTCTGGCCCTTGTCCAGCTCTT
GGCTGCCATCACCTGGATCGAGCTCGTGGCCGGGAAGCAGAGCGAGAGCC
AGGCTCCGGGGGATCTCGCGAAATTCGGCAACCAGTTCAAGCCCGAGGAT
GAGGAGGAGTACGCTGCCCTGCAGTTGAAGGAGCTCAAGAATGGCCGCCT
GGCCATGATTGCAAGCATGGGCCTTCTGGTCCAGGAGCTTGTCACGGGCC
AGGGCATTTGGGAGCAGCTGTCTTCCGGTAACGTCTGGGCTATCGGCGAC
GGCAAGGGCCTCCTCTAA

Synonyms

Publications