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Properties
| Property Name | Value |
|---|
| TranscriptId | 601003 |
| Track | FilteredModels2 |
| ProteinId | 600917 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:422652..424763 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8008 ID=mRNA_8008|Name=jgi.p|Nanoce1779_2|600917|organism=Nannochloropsis oceanica|type=mRNA|length=883bp
AGAGAACGAACGTTTAGCACCAGCGACAGTACGGGCAGCAGCAGTACCAG
CAATAGCGGCAGCAATCGCAGCACCAGCACGGCACGACGATGGCGGCAGC
AGTAGCGACTAGAGGCCACGAGTCCATGACTGCCCCACCTCTGGCGTCCT
CTTTCGAATCACACAAAGACAAGGGCGGCTTCATGCGGCGTGCCATGGTT
GAAGTGGGTTTCCTGGCTCTCTGCCTGGCAGCAGAGCTAGGCTGGTGGCA
TTTTCGGAGCCGTTACTCCCTCGCTCCCGAGGGGAGTGAGAAGGAAGACG
GGCTGCTCCTCGTCTCGCTGGTGTCGAAAGTGTACGTAGGCGCACGCCTT
GTCCTGTGGGTCACCGGGAAAGGCTTTCAAACCGTGCAACGACAGCATGC
CGTTACCCGCGCCCTGTCCTACCTCCTCCTCTTCCTCGCCGGGGGCTTTG
CCTTCCACGCCTTAGAGGGCGGCAAGCTCCTGCTGGGCCTGATCAAGCAG
AACCACATGCTCTTCATTCTCTACAACCACTTGATCTCCGCCCCTCAACA
AGCCTACTTCAAAGGAGAAGCATTCTTCTTCCTGCGTATACTCGCAGCGT
TGCTGAGCTGGCAGATCCTCCTCACAGTCAGCTTCTGGCTACTGACCACC
CTCCTCCTCATCCCAGTTGCCCTCCTCTCCCTTCTTCCTTCCTCCTCCAC
CGCCTCCTCCTCCGCCTCCAGCATGTCCTCCCCCCCTTCCTCCTCCTCGT
CCTCGTCCTCCCCTGAAGGGACGCCGGTTAAAGGTGCGAGAGGATGGGGA
GGGAAGAAGGGAAGGAGGGAGGGAGGAAAAGGCGTGTGCCATCGTCCTTT
ACTGGTGTGTTTGTGTGTTTAGGATGGAACGGG back to topprotein sequence of jgi.p|Nanoce1779_2|600917 >mRNA_8008-protein ID=mRNA_8008-protein|Name=jgi.p|Nanoce1779_2|600917|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MAAAVATRGHESMTAPPLASSFESHKDKGGFMRRAMVEVGFLALCLAAEL
GWWHFRSRYSLAPEGSEKEDGLLLVSLVSKVYVGARLVLWVTGKGFQTVQ
RQHAVTRALSYLLLFLAGGFAFHALEGGKLLLGLIKQNHMLFILYNHLIS
APQQAYFKGEAFFFLRILAALLSWQILLTVSFWLLTTLLLIPVALLSLLP
SSSTASSSASSMSSPPSSSSSSSSPEGTPVKGARGWGGKKGRREGGKGVC
HRPLLVCLCV* back to topmRNA from alignment at scaffold_22:422652..424763+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8008 ID=mRNA_8008|Name=jgi.p|Nanoce1779_2|600917|organism=Nannochloropsis oceanica|type=mRNA|length=2112bp|location=Sequence derived from alignment at scaffold_22:422652..424763+ (Nannochloropsis oceanica)
AGAGAACGAACGTTTAGCACCAGCGACAGTACGGGCAGCAGCAGTACCAG
CAATAGCGGCAGCAATCGCAGCACCAGCACGGCACGACGATGGCGGCAGC
AGTAGCGACTAGGTAAGCCTCTTTTTCCCTTCAGGTCATAGCGGACAAGC
CAAACTATCACCTACTCCTTCTCATGCCTCCCTTTCTTCCTTTCTCACGC
CCTCCTTCCTTCCATCTCTTTCCACCCACCTGCCTTTGTGCCCCTTCCTG
TGTGCCACACAGAGGCCACGAGTCCATGACTGCCCCACCTCTGGCGTCCT
CTTTCGAATCACACAAAGACAAGGGCGGCTTCATGCGGGTAGAAAAGGGA
GGGGAGAGTAAAAGAGGGACGAAGGCGCGTTTTCGCATATCTCATACAAA
TTACATTCTCTCCTGTCCCACTCCCTCGTCCTCACTCTTTTCCTCGTCCG
TCATTCTGACATACCATCGACCATCCCGACAATCAACGAAATAGCGTGCC
ATGGTTGAAGTGGGTTTCCTGGCTCTCTGCCTGGCAGCAGAGCTAGGCTG
GTGGCATGTACGTGAGGAGGAAGGAAGGGGAGGGAGGGATACGCATTTAA
GGGTTTTCTGCACAATCGTATCGTCTTGATGTATGTGAATGAAATGCGAT
CATTCGACAAGGTGCAGTGGAGTTATTTGATTTTCGTTCTACAACTGACA
ACCCTATCCATCCCTTCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCC
TCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCTCGGCAGTTTCGGAGC
CGTTACTCCCTCGCTCCCGAGGGGAGTGAGAAGGAAGACGGGCTGCTCCT
CGTCTCGCTGGTGTCGAAAGTGTACGTAGGCGCACGCCTTGTCCTGTGGG
TCACCGGGAAAGGTGAGGAGGAGGGAAGGGAGGGAGGGAAGGAAAGAGGC
GAAAGCAGACGGGCGTGTGTATGATAATATCGTGATTGATTGAGGCGTGC
TTATTTATGTATTACATCTTTTCTTTTGTTTTATTTGCCTCCTCTTATAA
ACTTTTATTTGAATTGACCACACAGGCTTTCAAACCGTGCAACGACAGCA
TGCCGTTACCCGTACGTTGGCAGGAGGGGAGGGAGGGAGGGATAGAGGTA
GCGATAGACGGACAGGGATGCCGTAAGTTGCTTGCTTCAAGCCCATGTTA
ATACTTATTCCCTCCGCACCTCCCTCCCTCCCTCCCTCCTTCAGGCGCCC
TGTCCTACCTCCTCCTCTTCCTCGCCGGGGGCTTTGCCTTCCACGCCTTA
GAGGGCGGCAAGCTCCTGCTGGGCCTGATCAAGCAGAACCACATGCTCTT
CATTCTCTACAAGTACGTTCCGTTCATCCCCTCCCTCCCTCCCTCCCTCT
CTCCCTCTCTCCCTCCTCGTCGCCTTCGCCTCCTCCAACCCGTCATCCTA
ATACCTCTCTTCACTTTCTCCACCCCTCCCTCCCTCCCTTCCTCCCTCCC
TCCCTCCCTCCCTCCATCCATCCCTAGCCACTTGATCTCCGCCCCTCAAC
AAGCCTACTTCAAAGGAGAAGCATTCTTCTTCCTGCGTATACTCGCAGCG
TTGCTGAGCTGGCAGGTGAGGCGGCACGCTCCTTCCTCCCCTCCCCCTCC
CCCTCCCTCGAGTCCCGACTTGATTGCCACTGATGCCGTCTGCCCTGAAA
AACGTCTTTCCCTCCCTCACCCCCCCCCCCCTCCCTTCCCTCCCTCCTTC
CCTCCCTTCCTTCTCCTCCTTTCTTTTTGGTCACCGTCCTCCCTCATTTC
CTTTTTCAATCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGATCCTCC
TCACAGTCAGCTTCTGGCTACTGACCACCCTCCTCCTCATCCCAGTTGCC
CTCCTCTCCCTTCTTCCTTCCTCCTCCACCGCCTCCTCCTCCGCCTCCAG
CATGTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGTCCTCCCCTGAAGGGA
CGCCGGTTAAAGGTGCGAGAGGATGGGGAGGGAAGAAGGGAAGGAGGGAG
GGAGGAAAAGGCGTGTGCCATCGTCCTTTACTGGTGTGTTTGTGTGTTTA
GGATGGAACGGG back to topCoding sequence (CDS) from alignment at scaffold_22:422652..424763+ >mRNA_8008 ID=mRNA_8008|Name=jgi.p|Nanoce1779_2|600917|organism=Nannochloropsis oceanica|type=CDS|length=6264bp|location=Sequence derived from alignment at scaffold_22:422652..424763+ (Nannochloropsis oceanica)
ATGGCGGCAGCAGTAGCGACTAGAGGCCACGAGTCCATGACTGCCCCACC
TCTGGCGTCCTCTTTCGAATCACACAAAGACAAGGGCGGCTTCATGCGGC
GTGCCATGGTTGAAGTGGGTTTCCTGGCTCTCTGCCTGGCAGCAGAGCTA
GGCTGGTGGCATTTTCGGAGCCGTTACTCCCTCGCTCCCGAGGGGAGTGA
GAAGGAAGACGGGCTGCTCCTCGTCTCGCTGGTGTCGAAAGTGTACGTAG
GCGCACGCCTTGTCCTGTGGGTCACCGGGAAAGGCTTTCAAACCGTGCAA
CGACAGCATGCCGTTACCCGCGCCCTGTCCTACCTCCTCCTCTTCCTCGC
CGGGGGCTTTGCCTTCCACGCCTTAGAGGGCGGCAAGCTCCTGCTGGGCC
TGATCAAGCAGAACCACATGCTCTTCATTCTCTACAACCACTTGATCTCC
GCCCCTCAACAAGCCTACTTCAAAGGAGAAGCATTCTTCTTCCTGCGTAT
ACTCGCAGCGTTGCTGAGCTGGCAGATCCTCCTCACAGTCAGCTTCTGGC
TACTGACCACCCTCCTCCTCATCCCAGTTGCCCTCCTCTCCCTTCTTCCT
TCCTCCTCCACCGCCTCCTCCTCCGCCTCCAGCATGTCCTCCCCCCCTTC
CTCCTCCTCGTCCTCGTCCTCCCCTGAAGGGACGCCGGTTAAAGGTGCGA
GAGGATGGGGAGGGAAGAAGGGAAGGAGGGAGGGAGGAAAAGGCGTGTGC
CATCGTCCTTTACTGGTGTGTTTGTGTGTTTAGATGGCGGCAGCAGTAGC
GACTAGAGGCCACGAGTCCATGACTGCCCCACCTCTGGCGTCCTCTTTCG
AATCACACAAAGACAAGGGCGGCTTCATGCGGCGTGCCATGGTTGAAGTG
GGTTTCCTGGCTCTCTGCCTGGCAGCAGAGCTAGGCTGGTGGCATTTTCG
GAGCCGTTACTCCCTCGCTCCCGAGGGGAGTGAGAAGGAAGACGGGCTGC
TCCTCGTCTCGCTGGTGTCGAAAGTGTACGTAGGCGCACGCCTTGTCCTG
TGGGTCACCGGGAAAGGCTTTCAAACCGTGCAACGACAGCATGCCGTTAC
CCGCGCCCTGTCCTACCTCCTCCTCTTCCTCGCCGGGGGCTTTGCCTTCC
ACGCCTTAGAGGGCGGCAAGCTCCTGCTGGGCCTGATCAAGCAGAACCAC
ATGCTCTTCATTCTCTACAACCACTTGATCTCCGCCCCTCAACAAGCCTA
CTTCAAAGGAGAAGCATTCTTCTTCCTGCGTATACTCGCAGCGTTGCTGA
GCTGGCAGATCCTCCTCACAGTCAGCTTCTGGCTACTGACCACCCTCCTC
CTCATCCCAGTTGCCCTCCTCTCCCTTCTTCCTTCCTCCTCCACCGCCTC
CTCCTCCGCCTCCAGCATGTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGT
CCTCCCCTGAAGGGACGCCGGTTAAAGGTGCGAGAGGATGGGGAGGGAAG
AAGGGAAGGAGGGAGGGAGGAAAAGGCGTGTGCCATCGTCCTTTACTGGT
GTGTTTGTGTGTTTAGATGGCGGCAGCAGTAGCGACTAGAGGCCACGAGT
CCATGACTGCCCCACCTCTGGCGTCCTCTTTCGAATCACACAAAGACAAG
GGCGGCTTCATGCGGCGTGCCATGGTTGAAGTGGGTTTCCTGGCTCTCTG
CCTGGCAGCAGAGCTAGGCTGGTGGCATTTTCGGAGCCGTTACTCCCTCG
CTCCCGAGGGGAGTGAGAAGGAAGACGGGCTGCTCCTCGTCTCGCTGGTG
TCGAAAGTGTACGTAGGCGCACGCCTTGTCCTGTGGGTCACCGGGAAAGG
CTTTCAAACCGTGCAACGACAGCATGCCGTTACCCGCGCCCTGTCCTACC
TCCTCCTCTTCCTCGCCGGGGGCTTTGCCTTCCACGCCTTAGAGGGCGGC
AAGCTCCTGCTGGGCCTGATCAAGCAGAACCACATGCTCTTCATTCTCTA
CAACCACTTGATCTCCGCCCCTCAACAAGCCTACTTCAAAGGAGAAGCAT
TCTTCTTCCTGCGTATACTCGCAGCGTTGCTGAGCTGGCAGATCCTCCTC
ACAGTCAGCTTCTGGCTACTGACCACCCTCCTCCTCATCCCAGTTGCCCT
CCTCTCCCTTCTTCCTTCCTCCTCCACCGCCTCCTCCTCCGCCTCCAGCA
TGTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGTCCTCCCCTGAAGGGACG
CCGGTTAAAGGTGCGAGAGGATGGGGAGGGAAGAAGGGAAGGAGGGAGGG
AGGAAAAGGCGTGTGCCATCGTCCTTTACTGGTGTGTTTGTGTGTTTAGA
TGGCGGCAGCAGTAGCGACTAGAGGCCACGAGTCCATGACTGCCCCACCT
CTGGCGTCCTCTTTCGAATCACACAAAGACAAGGGCGGCTTCATGCGGCG
TGCCATGGTTGAAGTGGGTTTCCTGGCTCTCTGCCTGGCAGCAGAGCTAG
GCTGGTGGCATTTTCGGAGCCGTTACTCCCTCGCTCCCGAGGGGAGTGAG
AAGGAAGACGGGCTGCTCCTCGTCTCGCTGGTGTCGAAAGTGTACGTAGG
CGCACGCCTTGTCCTGTGGGTCACCGGGAAAGGCTTTCAAACCGTGCAAC
GACAGCATGCCGTTACCCGCGCCCTGTCCTACCTCCTCCTCTTCCTCGCC
GGGGGCTTTGCCTTCCACGCCTTAGAGGGCGGCAAGCTCCTGCTGGGCCT
GATCAAGCAGAACCACATGCTCTTCATTCTCTACAACCACTTGATCTCCG
CCCCTCAACAAGCCTACTTCAAAGGAGAAGCATTCTTCTTCCTGCGTATA
CTCGCAGCGTTGCTGAGCTGGCAGATCCTCCTCACAGTCAGCTTCTGGCT
ACTGACCACCCTCCTCCTCATCCCAGTTGCCCTCCTCTCCCTTCTTCCTT
CCTCCTCCACCGCCTCCTCCTCCGCCTCCAGCATGTCCTCCCCCCCTTCC
TCCTCCTCGTCCTCGTCCTCCCCTGAAGGGACGCCGGTTAAAGGTGCGAG
AGGATGGGGAGGGAAGAAGGGAAGGAGGGAGGGAGGAAAAGGCGTGTGCC
ATCGTCCTTTACTGGTGTGTTTGTGTGTTTAGATGGCGGCAGCAGTAGCG
ACTAGAGGCCACGAGTCCATGACTGCCCCACCTCTGGCGTCCTCTTTCGA
ATCACACAAAGACAAGGGCGGCTTCATGCGGCGTGCCATGGTTGAAGTGG
GTTTCCTGGCTCTCTGCCTGGCAGCAGAGCTAGGCTGGTGGCATTTTCGG
AGCCGTTACTCCCTCGCTCCCGAGGGGAGTGAGAAGGAAGACGGGCTGCT
CCTCGTCTCGCTGGTGTCGAAAGTGTACGTAGGCGCACGCCTTGTCCTGT
GGGTCACCGGGAAAGGCTTTCAAACCGTGCAACGACAGCATGCCGTTACC
CGCGCCCTGTCCTACCTCCTCCTCTTCCTCGCCGGGGGCTTTGCCTTCCA
CGCCTTAGAGGGCGGCAAGCTCCTGCTGGGCCTGATCAAGCAGAACCACA
TGCTCTTCATTCTCTACAACCACTTGATCTCCGCCCCTCAACAAGCCTAC
TTCAAAGGAGAAGCATTCTTCTTCCTGCGTATACTCGCAGCGTTGCTGAG
CTGGCAGATCCTCCTCACAGTCAGCTTCTGGCTACTGACCACCCTCCTCC
TCATCCCAGTTGCCCTCCTCTCCCTTCTTCCTTCCTCCTCCACCGCCTCC
TCCTCCGCCTCCAGCATGTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGTC
CTCCCCTGAAGGGACGCCGGTTAAAGGTGCGAGAGGATGGGGAGGGAAGA
AGGGAAGGAGGGAGGGAGGAAAAGGCGTGTGCCATCGTCCTTTACTGGTG
TGTTTGTGTGTTTAGATGGCGGCAGCAGTAGCGACTAGAGGCCACGAGTC
CATGACTGCCCCACCTCTGGCGTCCTCTTTCGAATCACACAAAGACAAGG
GCGGCTTCATGCGGCGTGCCATGGTTGAAGTGGGTTTCCTGGCTCTCTGC
CTGGCAGCAGAGCTAGGCTGGTGGCATTTTCGGAGCCGTTACTCCCTCGC
TCCCGAGGGGAGTGAGAAGGAAGACGGGCTGCTCCTCGTCTCGCTGGTGT
CGAAAGTGTACGTAGGCGCACGCCTTGTCCTGTGGGTCACCGGGAAAGGC
TTTCAAACCGTGCAACGACAGCATGCCGTTACCCGCGCCCTGTCCTACCT
CCTCCTCTTCCTCGCCGGGGGCTTTGCCTTCCACGCCTTAGAGGGCGGCA
AGCTCCTGCTGGGCCTGATCAAGCAGAACCACATGCTCTTCATTCTCTAC
AACCACTTGATCTCCGCCCCTCAACAAGCCTACTTCAAAGGAGAAGCATT
CTTCTTCCTGCGTATACTCGCAGCGTTGCTGAGCTGGCAGATCCTCCTCA
CAGTCAGCTTCTGGCTACTGACCACCCTCCTCCTCATCCCAGTTGCCCTC
CTCTCCCTTCTTCCTTCCTCCTCCACCGCCTCCTCCTCCGCCTCCAGCAT
GTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGTCCTCCCCTGAAGGGACGC
CGGTTAAAGGTGCGAGAGGATGGGGAGGGAAGAAGGGAAGGAGGGAGGGA
GGAAAAGGCGTGTGCCATCGTCCTTTACTGGTGTGTTTGTGTGTTTAGAT
GGCGGCAGCAGTAGCGACTAGAGGCCACGAGTCCATGACTGCCCCACCTC
TGGCGTCCTCTTTCGAATCACACAAAGACAAGGGCGGCTTCATGCGGCGT
GCCATGGTTGAAGTGGGTTTCCTGGCTCTCTGCCTGGCAGCAGAGCTAGG
CTGGTGGCATTTTCGGAGCCGTTACTCCCTCGCTCCCGAGGGGAGTGAGA
AGGAAGACGGGCTGCTCCTCGTCTCGCTGGTGTCGAAAGTGTACGTAGGC
GCACGCCTTGTCCTGTGGGTCACCGGGAAAGGCTTTCAAACCGTGCAACG
ACAGCATGCCGTTACCCGCGCCCTGTCCTACCTCCTCCTCTTCCTCGCCG
GGGGCTTTGCCTTCCACGCCTTAGAGGGCGGCAAGCTCCTGCTGGGCCTG
ATCAAGCAGAACCACATGCTCTTCATTCTCTACAACCACTTGATCTCCGC
CCCTCAACAAGCCTACTTCAAAGGAGAAGCATTCTTCTTCCTGCGTATAC
TCGCAGCGTTGCTGAGCTGGCAGATCCTCCTCACAGTCAGCTTCTGGCTA
CTGACCACCCTCCTCCTCATCCCAGTTGCCCTCCTCTCCCTTCTTCCTTC
CTCCTCCACCGCCTCCTCCTCCGCCTCCAGCATGTCCTCCCCCCCTTCCT
CCTCCTCGTCCTCGTCCTCCCCTGAAGGGACGCCGGTTAAAGGTGCGAGA
GGATGGGGAGGGAAGAAGGGAAGGAGGGAGGGAGGAAAAGGCGTGTGCCA
TCGTCCTTTACTGGTGTGTTTGTGTGTTTAGATGGCGGCAGCAGTAGCGA
CTAGAGGCCACGAGTCCATGACTGCCCCACCTCTGGCGTCCTCTTTCGAA
TCACACAAAGACAAGGGCGGCTTCATGCGGCGTGCCATGGTTGAAGTGGG
TTTCCTGGCTCTCTGCCTGGCAGCAGAGCTAGGCTGGTGGCATTTTCGGA
GCCGTTACTCCCTCGCTCCCGAGGGGAGTGAGAAGGAAGACGGGCTGCTC
CTCGTCTCGCTGGTGTCGAAAGTGTACGTAGGCGCACGCCTTGTCCTGTG
GGTCACCGGGAAAGGCTTTCAAACCGTGCAACGACAGCATGCCGTTACCC
GCGCCCTGTCCTACCTCCTCCTCTTCCTCGCCGGGGGCTTTGCCTTCCAC
GCCTTAGAGGGCGGCAAGCTCCTGCTGGGCCTGATCAAGCAGAACCACAT
GCTCTTCATTCTCTACAACCACTTGATCTCCGCCCCTCAACAAGCCTACT
TCAAAGGAGAAGCATTCTTCTTCCTGCGTATACTCGCAGCGTTGCTGAGC
TGGCAGATCCTCCTCACAGTCAGCTTCTGGCTACTGACCACCCTCCTCCT
CATCCCAGTTGCCCTCCTCTCCCTTCTTCCTTCCTCCTCCACCGCCTCCT
CCTCCGCCTCCAGCATGTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGTCC
TCCCCTGAAGGGACGCCGGTTAAAGGTGCGAGAGGATGGGGAGGGAAGAA
GGGAAGGAGGGAGGGAGGAAAAGGCGTGTGCCATCGTCCTTTACTGGTGT
GTTTGTGTGTTTAG back to top
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