|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 600967 |
| Track | FilteredModels2 |
| ProteinId | 600881 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:406673..411509 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8005 ID=mRNA_8005|Name=jgi.p|Nanoce1779_2|600881|organism=Nannochloropsis oceanica|type=mRNA|length=2650bp
TGCAGGTCGAGGGGAGGGAGGGTGGAGGAGGAGGAGGAGGAGGAGGAGCT
GGTGGTGGTGGTGGTTGAAGTGGAGGTGGTGGAGATGGCGGAGGAGGAGG
AGGAGGAGGAAGGGAGGGAGGAGGTGTTTTGGGCGGCCGCCTCCCCTTCC
TCGCCGGCAATGGTCGTAATATTTGCGACTACTTGCTCGCCTTTCAGGTG
CTTGTAGACAAGGCGGTGTGTGTGCATCCCCTGGTAAGAAGGACGGGAGC
GGCCCGAGAGATACCGAGAGGGAGGCGCGGGCTCGACGAGGAGGGCGAAG
GCGGGACGGAGGGAGGGAGGGAGGGAGAGGGGCCGGTGGGTGAAGAGGAA
GAGGGAGATGTCCCCTTGTTTGTCGAAGCACTTGAAGACGTAGGTGCAGG
TGGTGTTGAGATTCGTGAAAAAAGCTTTGACGAGGTAGAGGAAGAGGAGG
AGGCGGTCCTCTGGTGCGATGAAACTGGCCATGAGGAGCTCCTGCATTGT
CTGCCTTCTCATCACATCTCGGTGGCTTTCTTCCACTCCGCGGAAGATCT
TGTCATAGAGCCCATTACTGGCCTGAATTAGTCGGGAGCCGTCCATGCTA
GTGAGAAGGAAGCCGACCTTTCCCACTCCCAGGGCGCCCTGATCCAAACT
TTGAAAGGTGGGAGTCTCCTTCAGCTCCGACACCGAATGCAACATCCCGT
CAGCTTCTTCTTTCGCTCGTTGGTTTCTTGTGTAGTCGGGGAGGCTGCTG
CTGCTGCTGCTGCCACCTCCCTCTACTTCGAAGGCGGTGATGGCCAGGAT
ATGGGCCACCTGGTGGGCGATGCCCCACGTGATATCCCGCCCGACGAGGA
GGGAGAGCGAATGCCACGTCCGTAGCATGCACACTGCTTTCTGTCGCTCG
ATCTTTCCCTCGCTCTGCACCTGGCGGAACGCCCGGAGATAGAGCTCAGT
CAGGGCTGTTGGGTCAGTTCTTTCAATGACCATGTCGACGGTAGAAAGGT
GTTCCGTGCCCTTGCCCTTTTGGATCCGGCAAGGGAGGGACAGGCGCCAA
CAACGGTGACAAGGATAGGTGCCATCACATTTCATCTTCCCCACACGGCA
GCGAACGCATGTGTGAAGGAGCTTCGGGGCGCGGCTCTGCTTTTGCCACG
GATGAGACCAGAGTGTAGGGAGATTTATGGGTCGGGGCGGTTGGGAGCCC
ACGCCGCTCAATCCCCTTCCCCCTGATACGGAGAGCTCCATGTAGGTTGG
CCGTGGTCGGTAGGGGTGTCTTCACGCGTAGCTACGACGCCTGTTTGACC
AACACCTGTCGTTGTATTGCCTGCGAACGCAGGGCCATCCCCTTGGGTGG
CTAAATGGGAAGGGGGAAGTGAAAAGGAATCGTGTCTTCATACTTCATGC
GGTCGCCGGTGCAACCGCCGGGCGGCACTACTTTATGCCCGGACCAAGTA
AATTAGCGACCCACATGACATATAAAAGAGTCCACCCACGAAGCAAACAT
ACCCCATACCCACAAGAAAGGGGGAGACCGGAAGAATCTCGTAAGCCGAC
GCCCTGAAGGTTGACATCGATTGTCGATGACCTCATCTCTATATGATCTC
GATGTACTTGAGTGCCCTAACGTGTTTGTGTGTTGCGCATGACATTCCGA
GGGTTTCGGCACGTCTGCGAGTCACCTTCCACTCCCAGAGAGAGAAGACC
AAACACACCGCGACCTTCATGAGCAAAACCCGTGCAAATACTCAACTAAG
TCGGTTTGGAAGCAGTGACAAGCTCGTTGGAAGAGTTACAGAAGCCCATC
GGCAGCAGGCATGTAGCTCTCTCGAAAGGCGCGAAAAGAAGAGACATGAC
GGAGAGCAATCACGAGACATGAAGTCATGCACAACATATGATATCAGCTT
AGCTGGCACACCTCGAACATGCAAACACCCATTGACCATCCAATTTAACC
ATGACATTTCCATCCTATTCCCCTCCGTCGACAAAGAAACACAGGGAATG
GAGCAAAAATGTGTCAACTATGACGCAGTCATCTCCCTCCTCAATCGAAA
AAACCAAAGCACAATAGCATGTGATTACACTTACCTACACCGCACGAGAC
AGAATTTTTCAGCGTTTATGTCCCACGGCTTTTCCCTGGATAATAGAGAA
ACGTATGTCTCAACACCCCTCGAAAATAGAGCGGGGGAGGAAAGACTCGA
CTGATTTGATGGTTTTTGATGACAGAGGCACCCGACGAACATGGTGATAG
GTTACCGGTGTGATGCACGGCAAGGAAAGCCCCCCCAAAAATCAAAGAAG
CCTCAGAAAAAGTGCGGCGCACTTAACATGTCTTCCTCATGCCCAAGGCT
ACCACCGTGGGGAAAAAGATGCAAGCAATTGTTGCCGCTCCGGCTGACAT
TTCACACGGATTGATCGCGCCGATGTAAGCGGTCCTGCCCACCTTTTATC
TCAAGGCCTCCCTCGCCAGCCAAGCATATTTATGCCTGCTCGACTTTCAA
ATCGGCCACAAAATAATTAAGACGCGTTCCCGAAGACGACTAAAACAGCA
CACAGCTTGTATTGTCTTTACCTGGCAAACGGCATAGGGGCCATCTCGAC
ACCATGGGGAAAAGTACGGGCTAAATCGGGCTCTCTCACCCTGTTGGAGA back to topprotein sequence of jgi.p|Nanoce1779_2|600881 >mRNA_8005-protein ID=mRNA_8005-protein|Name=jgi.p|Nanoce1779_2|600881|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MISMYLSALTCLCVAHDIPRVSARLRVTFHSQREKTKHTATFMSKTRANT
QLSRFGSSDKLVGRVTEAHRQQACSSLERREKKRHDGEQSRDMKSCTTYD
ISLAGTPRTCKHPLTIQFNHDISILFPSVDKETQGMEQKCVNYDAVISLL
NRKNQSTIACDYTYLHRTRQNFSAFMSHGFSLDNRETYVSTPLENRAGEE
RLD* back to topmRNA from alignment at scaffold_22:406673..411509- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8005 ID=mRNA_8005|Name=jgi.p|Nanoce1779_2|600881|organism=Nannochloropsis oceanica|type=mRNA|length=4837bp|location=Sequence derived from alignment at scaffold_22:406673..411509- (Nannochloropsis oceanica)
TGCAGGTCGAGGGGAGGGAGGGTGGAGGAGGAGGAGGAGGAGGAGGAGCT
GGTGGTGGTGGTGGTTGAAGTGGAGGTGGTGGAGATGGCGGAGGAGGAGG
AGGAGGAGGAAGGGAGGGAGGAGGTGTTTTGGGCGGCCGCCTCCCCTTCC
TCGCCGGCAATGGTCGTAATATTTGCGACTACTTGCTCGCCTTTCAGGTG
CTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTCA
GTGACTTGCTAGAAGGAGGGAGGAAGAGAAAGAGGAAGGGGGAGAGGGAG
GGAAGGAGGGGAGCGACTAGAGAGGTGACGAGGAGGGAGGGAAGGAGGAA
GGGAGGGAGGGAGGGTGTTTGTCGTACCTTGTAGACAAGGCGGTGTGTGT
GCATCCCCTGGTAAGAAGGACGGGAGCGGCCCGAGAGATACCGAGAGGGA
GGCGCGGGCTCGACGAGGAGGGCGAAGGCGGGACGGAGGGAGGGAGGGAG
GGAGAGGGGCCGGTGGGTGAAGAGGAAGAGGGAGATGTCCCCTTGTTTGT
CGAAGCACTGAGGAAGGGGGGGGGGAGGGAGGGGGGGAGTGACGAGTGGA
TTTCGTCGGCCGAGAGCCAATAATGGAGGGAGGGAGGGAGAGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGAGTACGTACCTTGAAGACGTAGGT
GCAGGTGGTGTTGAGATTCGTGAAAAAAGCTTTGACGAGGTAGAGGAAGA
GGAGGAGGCGGTCCTCTGGTGCGATGAAACTGAAGGGGGAGGGAGGGCGG
GCGGGAGGGAGGGTGGGATGGAGGGCCGTGATTGAATGGACGTTGGCGGC
TTGACATGGAATAGAATCAGAGGGGGGAGGGAGGAAGGTAGAGAGGGAAG
GAGGGAGGGAGGCAGGGAGGGAGGCAGGGAGGGAGGGAGGGGACGCACCT
GGCCATGAGGAGCTCCTGCATTGTCTGCCTTCTCATCACATCTCGGTGGC
TTTCTTCCACTCCGCGGAAGATCTAGAGGGAGGTAGGGAGGGAAGGAAGG
AGGGAGGGAGGGAGGGAGAGGAAACAATTCAAAACTCGTGTCACTGGCCA
ACAGTCCACCGCGGGCCTCCCTCCTTCCTTCGCTCCTTCCCTCCTGCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCTTCC
TGACCTCCCTCCCTCCCTCCCTCCCGCCCGCCCGCCCTCCCTCCCTCCCT
CCCTCCCTTCCTCTCCACCTTGTCATAGAGCCCATTACTGGCCTGAATTA
GTCGGGAGCCGTCCATGCTAGTGAGAAGGAAGCCGACCTTTCCCACTCCC
AGGGCGCCTGTCGGAGGGAGGGAGGGCGGGAGGAAGGGCAGGTAAGTGCA
GTGCGAGGACGTGAAGGTAGGCCTCTCGTTTTCCCCCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTACCCTGATCCAAACTTTGAAAGGTGGGA
GTCTCCTTCAGCTCCGACACCGAATGCAACATCCCGTCAGCTTCTTCTTT
CGCTCGTTGGTTTCTGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGGTCTGCCTTTTCTTTCGCACCTCATTTCCCTAGAGGGGAGAAGA
AGGGGGGGGGAGGGAGGGAGGAAAGACAGAAGAACAACGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGTACCTTGTGTAGTCGGGG
AGGCTGCTGCTGCTGCTGCTGCCACCTCCCTCTACTTCGAAGGCGGTGAT
GGCCAGGATATGGGCCACCTGGTGGGCGATGCCCCACGTGATATCCCGCC
CGACGAGGAGGGAGAGCGAATGCCACGTCCGTCTGGTAAAAAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGTGAGTAAGGGAGTGGTACGGGTGAGTCTAT
CCGTCCAAAAGGAAGAAAGGAAGAAGGCAGGGAGGGAAAGTTGTACGATT
GAGAAGGAAGGGAGAGATGTATGGGCCGCATGCCGTGTCCCTTCGTGTCG
CTGACCGTCAGAATAAGAGGGCGAGGTGAGGGAGGGAGGGAGGGGCGGCT
AGGGCGCAGTGGCCGAGCGTGTCTCTTTTTATTCGCTTCCCTCTCTCCCT
CCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTATCTACTCACAGCA
TGCACACTGCTTTCTGTCGCTCGATCTTTCCCTCGCTCTGCACCTGGCGG
AACGCCCGGAGATAGAGCTCAGTCAGGGCTGTGGAAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGTTTAATGCAAGGTCTCTTTCTTCCC
GCCTCTCGCTTCCCCTTTGGCATTGACCCTCCCTCCCTCTCCCTTTTATG
GAACCCTCCTATCTCCGTCCCTCCCTTCCTCCCTGCCATTCGTGCGGTCG
ACTCGGTCCACAATCCTCTCGAGTGGACAAGATTGACAGGAAGCGAGGGA
GGGAGGAAGGGAGGAAGGGAAGGAGGGCAAGCGTACCTGTTGGGTCAGTT
CTTTCAATGACCATGTCGACGGTAGAAAGGTGTTCCGTGCCCTTGCCCTT
TTGGATCCGGCAAGGGAGGGACAGGCGCCAACAACGGTGACAAGGATAGG
TGCCATCACCTGATGGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
GTTGGGAAACCTGGAGGTAGGATTTCATTGCCCTTGCTGCAAAAGTAGGG
GGGTATTTTATCCCTGGGATTGTAAGGAGGGGGGAAGGAGGAGGGAGGGA
GTGTGAGGTGGAGGGAGGAGGGATGGGAGGGAGGAAGTGAAGGAGGGGGG
AAGTGAAGGAGGTAGGGAGAAAGGGGGGGGAGTATACAGGATAAATTGAT
GGAATTGATGTTGAAATGACGTAATTGTAGCTGAGATGGAAGATGGGATG
GGATCGATGTATGTGAGGTCTGTTGAGAGTGAGGAGGGAGCGAAGGGGAG
GCCCCATGAGGGTGGGGGCACGCGATGCGAACGAGACACTAAGAACGTCA
ATAAGACTGTGTGTGAGAGGTAGGTACAGGTACACTCTCCCAAAGAGCTA
TCGTGTGAGGGGGTAAGGATTAGACATGGTTGGATGGAGGGGATGCTGGG
GTTGCAACAGAGGGGCATGACCGGGAGAAATCGTCTGGATGAAGGGTAAC
TAATTGGTGGCGTCACCACTTATCACCTACTGGAATACAAACACAAGTCA
AGCGGGCGCACGTACATTTCATCTTCCCCACACGGCAGCGAACGCATGTG
TGAAGGAGCTTCGGGGCGCGGCTCTGCTTTTGCCACGGATGAGACCAGAG
TGTAGGGAGATTTATGGGTCGGGGCGGTTGGGAGCCCACGCCGCTCAATC
CCCTTCCCCCTGATACGGAGAGCTCCATGTAGGTTGGCCGTGGTCGGTAG
GGGTGTCTTCACGCGTAGCTACGACGCCTGTTTGACCAACACCTGTCGTT
GTATTGCCTGCGAACGCAGGGCCATCCCCTTGGGTGGCTAAATGGGAAGG
GGGAAGTGAAAAGGAATCGTGTCTTCATACTTCATGCGGTCGCCGGTGCA
ACCGCCGGGCGGCACTACTTTATGCCCGGACCAAGTAAATTAGCGACCCA
CATGACATATAAAAGAGTCCACCCACGAAGCAAACATACCCCATACCCAC
AAGAAAGGGGGAGACCGGAAGAATCTCGTAAGCCGACGCCCTGAAGGTTG
ACATCGATTGTCGATGACCTCATCTCTATATGATCTCGATGTACTTGAGT
GCCCTAACGTGTTTGTGTGTTGCGCATGACATTCCGAGGGTTTCGGCACG
TCTGCGAGTCACCTTCCACTCCCAGAGAGAGAAGACCAAACACACCGCGA
CCTTCATGAGCAAAACCCGTGCAAATACTCAACTAAGTCGGTTTGGAAGC
AGTGACAAGCTCGTTGGAAGAGTTACAGAAGCCCATCGGCAGCAGGCATG
TAGCTCTCTCGAAAGGCGCGAAAAGAAGAGACATGACGGAGAGCAATCAC
GAGACATGAAGTCATGCACAACATATGATATCAGCTTAGCTGGCACACCT
CGAACATGCAAACACCCATTGACCATCCAATTTAACCATGACATTTCCAT
CCTATTCCCCTCCGTCGACAAAGAAACACAGGGAATGGAGCAAAAATGTG
TCAACTATGACGCAGTCATCTCCCTCCTCAATCGAAAAAACCAAAGCACA
ATAGCATGTGATTACACTTACCTACACCGCACGAGACAGAATTTTTCAGC
GTTTATGTCCCACGGCTTTTCCCTGGATAATAGAGAAACGTATGTCTCAA
CACCCCTCGAAAATAGAGCGGGGGAGGAAAGACTCGACTGATTTGATGGT
TTTTGATGACAGAGGCACCCGACGAACATGGTGATAGGTTACCGGTGTGA
TGCACGGCAAGGAAAGCCCCCCCAAAAATCAAAGAAGCCTCAGAAAAAGT
GCGGCGCACTTAACATGTCTTCCTCATGCCCAAGGCTACCACCGTGGGGA
AAAAGATGCAAGCAATTGTTGCCGCTCCGGCTGACATTTCACACGGATTG
ATCGCGCCGATGTAAGCGGTCCTGCCCACCTTTTATCTCAAGGCCTCCCT
CGCCAGCCAAGCATATTTATGCCTGCTCGACTTTCAAATCGGCCACAAAA
TAATTAAGACGCGTTCCCGAAGACGACTAAAACAGCACACAGCTTGTATT
GTCTTTACCTGGCAAACGGCATAGGGGCCATCTCGACACCATGGGGAAAA
GTACGGGCTAAATCGGGCTCTCTCACCCTGTTGGAGA back to topCoding sequence (CDS) from alignment at scaffold_22:406673..411509- >mRNA_8005 ID=mRNA_8005|Name=jgi.p|Nanoce1779_2|600881|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_22:406673..411509- (Nannochloropsis oceanica)
ATGATCTCGATGTACTTGAGTGCCCTAACGTGTTTGTGTGTTGCGCATGA
CATTCCGAGGGTTTCGGCACGTCTGCGAGTCACCTTCCACTCCCAGAGAG
AGAAGACCAAACACACCGCGACCTTCATGAGCAAAACCCGTGCAAATACT
CAACTAAGTCGGTTTGGAAGCAGTGACAAGCTCGTTGGAAGAGTTACAGA
AGCCCATCGGCAGCAGGCATGTAGCTCTCTCGAAAGGCGCGAAAAGAAGA
GACATGACGGAGAGCAATCACGAGACATGAAGTCATGCACAACATATGAT
ATCAGCTTAGCTGGCACACCTCGAACATGCAAACACCCATTGACCATCCA
ATTTAACCATGACATTTCCATCCTATTCCCCTCCGTCGACAAAGAAACAC
AGGGAATGGAGCAAAAATGTGTCAACTATGACGCAGTCATCTCCCTCCTC
AATCGAAAAAACCAAAGCACAATAGCATGTGATTACACTTACCTACACCG
CACGAGACAGAATTTTTCAGCGTTTATGTCCCACGGCTTTTCCCTGGATA
ATAGAGAAACGTATGTCTCAACACCCCTCGAAAATAGAGCGGGGGAGGAA
AGACTCGACTGA back to top
|