jgi.p|Nanoce1779_2|600877, mRNA_8003 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600877
Unique NamemRNA_8003
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length794
Alignment locationscaffold_22:400224..401101 +

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Properties
Property NameValue
TranscriptId600963
TrackFilteredModels2
ProteinId600877
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:400224..401101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600877gene_8003Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600877mRNA_8003-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8003CDS_8003Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8003 ID=mRNA_8003|Name=jgi.p|Nanoce1779_2|600877|organism=Nannochloropsis oceanica|type=mRNA|length=794bp
GTATCGTCTTCTCTGATTTGTTTTTCATTACCTTTAATTACCATTCGCCC
ACATCGGGATTTGCTTTCATTACCTTTAATTACCATTCGCCCAAATCGGG
ATTTGCTGTGAAGTGAATCAATCGATCAATTTACCATTCATTTATTCTTC
CATTTCAGTGATTTCTGTTGTTACTGATGTTACTGCTGTTGCTGCTGCTT
TTGTTCTTATGGTGATGATGGTACTGTTGTCAATGTTGTCGCACTTGTTG
TCATATTGTTGTGATTGTTGGGGTTATTTATCGCTGTTTCTGCTGCTAGA
AGTTTGCGAGCTGCTGCTGCTGCTGCTGCTACTGCTACCATGTGCACAGA
AACGAGAGTGTTGTCGTCACGACCCTTCCCCCACTCCTACTCTTTCTCCT
TGACAGCCTCATATGTAATTCAAATGTTTCATCCTCTCTCTATTCTGTGT
GTGTGTGTGTATGTGTCTCTTTCCATTCATCTTCCAAATCCTTCATTCTT
CGTCTTTCCTAACCTCCCTCCCTCTCTCGCTCTCATTCTCAGTCATTTAG
GTCTGATTTCTTCATTCTCTCTCTTATTTTTCGTTTATAAGTAGACTCTT
TCCCTCCGTCTTTCCCTCACTTTCTCTTTCTCGCCGCCTCGTTCATGAGA
GCCAAGAGCGCCTGTACTGCACGTCCTTCTCCTCCAGTAGGAAGTCGAGA
ACAAGAGGGGGGAAGGGAGGGAGAGAGGGGAGGCGAAGCAGCAGAAGCAA
CCACAGCAGCAGCAGCAGCAGCACCAGTACCACTACCACCACCA
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protein sequence of jgi.p|Nanoce1779_2|600877

>mRNA_8003-protein ID=mRNA_8003-protein|Name=jgi.p|Nanoce1779_2|600877|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MCTETRVLSSRPFPHSYSFSLTASYVIQMFHPLSILCVCVYVSLSIHLPN
PSFFVFPNLPPSLALILSHLGLISSFSLLFFVYK*
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mRNA from alignment at scaffold_22:400224..401101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8003 ID=mRNA_8003|Name=jgi.p|Nanoce1779_2|600877|organism=Nannochloropsis oceanica|type=mRNA|length=878bp|location=Sequence derived from alignment at scaffold_22:400224..401101+ (Nannochloropsis oceanica)
GTATCGTCTTCTCTGATTTGTTTTTCATTACCTTTAATTACCATTCGCCC
AAATCGGGATTTGTTTTCATTTTCTTTAATTACCATTCGCCCAAATCGGG
ATTTGTTTTCATTACCTTTAATTACCATTCGCCCACATCGGGATTTGCTT
TCATTACCTTTAATTACCATTCGCCCAAATCGGGATTTGCTGTGAAGTGA
ATCAATCGATCAATTTACCATTCATTTATTCTTCCATTTCAGTGATTTCT
GTTGTTACTGATGTTACTGCTGTTGCTGCTGCTTTTGTTCTTATGGTGAT
GATGGTACTGTTGTCAATGTTGTCGCACTTGTTGTCATATTGTTGTGATT
GTTGGGGTTATTTATCGCTGTTTCTGCTGCTAGAAGTTTGCGAGCTGCTG
CTGCTGCTGCTGCTACTGCTACCATGTGCACAGAAACGAGAGTGTTGTCG
TCACGACCCTTCCCCCACTCCTACTCTTTCTCCTTGACAGCCTCATATGT
AATTCAAATGTTTCATCCTCTCTCTATTCTGTGTGTGTGTGTGTATGTGT
CTCTTTCCATTCATCTTCCAAATCCTTCATTCTTCGTCTTTCCTAACCTC
CCTCCCTCTCTCGCTCTCATTCTCAGTCATTTAGGTCTGATTTCTTCATT
CTCTCTCTTATTTTTCGTTTATAAGTAGACTCTTTCCCTCCGTCTTTCCC
TCACTTTCTCTTTCTCGCCGCCTCGTTCATGAGAGCCAAGAGCGCCTGTA
CTGCACGTCCTTCTCCTCCAGTAGGAAGTCGAGAACAAGAGGGGGGAAGG
GAGGGAGAGAGGGGAGGCGAAGCAGCAGAAGCAACCACAGCAGCAGCAGC
AGCAGCACCAGTACCACTACCACCACCA
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Coding sequence (CDS) from alignment at scaffold_22:400224..401101+

>mRNA_8003 ID=mRNA_8003|Name=jgi.p|Nanoce1779_2|600877|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_22:400224..401101+ (Nannochloropsis oceanica)
ATGTGCACAGAAACGAGAGTGTTGTCGTCACGACCCTTCCCCCACTCCTA
CTCTTTCTCCTTGACAGCCTCATATGTAATTCAAATGTTTCATCCTCTCT
CTATTCTGTGTGTGTGTGTGTATGTGTCTCTTTCCATTCATCTTCCAAAT
CCTTCATTCTTCGTCTTTCCTAACCTCCCTCCCTCTCTCGCTCTCATTCT
CAGTCATTTAGGTCTGATTTCTTCATTCTCTCTCTTATTTTTCGTTTATA
AGTAG
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Synonyms
Publications