jgi.p|Nanoce1779_2|600869, mRNA_8001 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600869
Unique Name	mRNA_8001
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1786
Alignment location	scaffold_22:395045..397478 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600955
Track	FilteredModels2
ProteinId	600869

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:395045..397478 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600869	gene_8001	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600869	mRNA_8001-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8001	CDS_8001	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:395045..397478+
coding sequence from alignment at scaffold_22:395045..397478+

mRNA sequence

>mRNA_8001 ID=mRNA_8001|Name=jgi.p|Nanoce1779_2|600869|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp
ACAGTAACCATGATCATCCGATCGAGACGAAGGCCACGGCGACAACAGCA
GCAACAACAATATCTACAACAAGGACAGCAACCACACTACTCCATTCTCC
TCCTCTCCCTCGTCCTCCTCGCTTGCCAAGTCTCCTCCTTCGTCCTCCCC
TTCCCCGCCCTTCCCTCCCCCTCCTCCTCAAGAAGAACAGCCTCTACATC
CTCCCCTCGCCCTCCCTCCTCCTCGACCTTGCCCCTCACCAGCGTCACAA
TCAGGAGGAATAGAATAGGAGATGGCCGTCGACCCTCATCATGCCTTTCA
CGAGGCCTACCTCAAGCCATGTTCGGGACCGCGGAAGGGGGGGATGCTGG
GACGGAGGAAGACCGACGAGCCGAAGGAGCACGAAGATTGGCGGCGGAGC
TGGAAAAGGAGAGGGTGCAAGTGGACGCCGCGAATGCCATGGAGAGAATG
AAGAAGGAACTTGCCCAAGAGAAAAGGCAGAAAATCATCACGGCGGTGGG
TTCTGTCCTAGGTGCGGTCGCCCTTTTCTTCTACCAGCATACACACCCAG
TGGAGGCCATTACTATTCTAAGAAAAATGCAGTCGGAAAGTCCCACCATC
CAGATGGTCGTTGGAAACGGCCGACCAACCGTTGTGGATTTTTATGCCGA
GTGGTGCGAAAACTGCAAGGAGATGGCTCCCGTGCTTCGGGCCGTCGAGA
GCAAGTACAAGGACAAAGTAAACTTCGTGGTCATCGACGGGGATGGCCGC
GATCAGGCTTCTGCCGGCCTAGTGGAACGGTTTCGAGTCGATGGCATCCC
CCATCTCGCCCTCATGACAAATGAGGGGGAGGTCAAGACCGCCCTGATAG
GTGCGTGTCTTTCCCTCCCTCTCTCCCTTCCTTCCTCCCTCCCTCCCTCC
CTCCTTCCTTCCCTTTCTACTGACTTTGCAAAGGCGCCATTTCGGAGAAA
TGGAAGATCAGATGCCGGCACCCATTCCAGCCTTCCCTCCCTACCTTGTT
TCTACCTCCCTTCTTTTTCTTCCCTACCCTCCCTCGCCCTTTCCCGCCTG
CTCATCCCTCTCCCCCTCCCCTTCCCTTCCCCCCTCCCCTCTCTCCCTCT
TCTCAGGCAAGGTCCCAAAGAAGGTTCTAGAAGCGGACATTGATTCGTTG
ATAGCCGGGCGTGCCCTCCCTTATGAAGGCTACGATGCCTTCGAGGACGA
CAATCACTTTGTCACCTTTTGATCAATCAATTTTATTTATAGAGGAGGAC
GATGGGGAAGGAAGGCATAGTCTTAAAGGTTAACCTGTTGAGGACATGAA
TGAGGAAGGGGCAGGACACCGCTCTCCTCCCTTTCTTTATTTGTTTGTGT
CTTATCGTTTGATATGAGAGGGGAGAGAGGGAGAGGTATAGAGTGGGGGA
GGAGAAGAGGGAGAGGTAGGCGTGAAGAACAACTTCAAAATGATGGGGAA
GGTATGAGTAAGACGTAAGCATAAAAAGTAGCGACGGTGAAAGAGAAAAG
GCACCAGCGGTAGCAGCAGCCGCGACAGCAGTAGCAGTAGAGAACCACCA
GCATTAACATGAAGAAAGGAGAAAAAAGGATGAGGGAGGAGGGAGGGAGG
GAGGCTGACTAGGACAATGAAAGTGAACAAAATATTGATTTTGGGGAGGC
AATGGTTTATGACAAGGAGAATGACAGGGAATAGAGGAGGAGGAGAAATA
GGAGGAGGAGGAGGATGAGGAGGAGGATGAGGAGGATGAGCGACAAGCAT
AGTTTTCCCTTTTATTCGAGTTTATTTAAACCGAGC

protein sequence of jgi.p|Nanoce1779_2|600869

>mRNA_8001-protein ID=mRNA_8001-protein|Name=jgi.p|Nanoce1779_2|600869|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MIIRSRRRPRRQQQQQQYLQQGQQPHYSILLLSLVLLACQVSSFVLPFPA
LPSPSSSRRTASTSSPRPPSSSTLPLTSVTIRRNRIGDGRRPSSCLSRGL
PQAMFGTAEGGDAGTEEDRRAEGARRLAAELEKERVQVDAANAMERMKKE
LAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMV
VGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQA
SAGLVERFRVDGIPHLALMTNEGEVKTALIGACLSLPLSLPSSLPPSLLP
SLSTDFAKAPFRRNGRSDAGTHSSLPSLPCFYLPSFSSLPSLALSRLLIP
LPLPFPSPLPSLPLLRQGPKEGSRSGH*

mRNA from alignment at scaffold_22:395045..397478+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8001 ID=mRNA_8001|Name=jgi.p|Nanoce1779_2|600869|organism=Nannochloropsis oceanica|type=mRNA|length=2434bp|location=Sequence derived from alignment at scaffold_22:395045..397478+ (Nannochloropsis oceanica)
ACAGTAACCATGATCATCCGATCGAGACGAAGGCCACGGCGACAACAGCA
GCAACAACAATATCTACAACAAGGACAGCAACCACACTACTCCATTCTCC
TCCTCTCCCTCGTCCTCCTCGCTTGCCAAGTCTCCTCCTTCGTCCTCCCC
TTCCCCGCCCTTCCCTCCCCCTCCTCCTCAAGAAGAACAGCCTCTACATC
CTCCCCTCGCCCTCCCTCCTCCTCGACCTTGCCCCTCACCAGCGTCACAA
TCAGGAGGAATAGAATAGGAGATGGCCGTCGACCCTCATCATGCCTTTCA
CGAGGCCTACCTCAAGCCATGTTCGGGACCGCGGAAGGGGGGGATGCTGG
GACGGAGGAAGACCGACGAGCCGAAGGAGCACGAAGATTGGCGGCGGAGC
TGGAAAAGGAGAGGGTGCAAGTGGACGCCGCGAATGCCATGGAGAGAATG
AAGAAGGTAGGTGGGTAAGGAGTAGAAGGGAGGGAGGGAGTTGCACCTGC
TGCTGCTGTTCCTGCACATTTCTTCATGATCTTGTCCGCGCCTGTCTGCC
GCCTTACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTC
TTTTCAGGAACTTGCCCAAGAGAAAAGGCAGAAAATCATCACGGCGGTGG
GTTCTGTCCTAGGTGCGGTCGCCCTTTTCTTCTACCAGCATACACACCCA
GGCACGTCTCCATCTTGCCTCCCTTCCTCCCTCCCTCCCTCCCTACTTAT
CCCCCTTCCGTCCTCCTTCTTCATCGTGTCAGCTTCGGCAAGACTGACAT
CTCCCTCCAAAAAAAACACCCATTTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCACTCTCTTCCTCCCTCCCTTCCTCTTTCCCTCAGTGGAGGCCA
TTACTATTCTAAGAAAAATGCAGTCGGAAAGTCCCACCATCCAGATGGTC
GTTGGAAACGGCCGACCAACCGTTGTGGATTTTTATGCCGAGTGGTGCGA
AAACTGCAAGGAGATGGCTCCCGTGCTTCGGGCCGTCGAGAGCAAGGTGA
GGGGGAATTAGGAAGATACGGATGCACCGAGGGATGGAGGGACGTGTGTT
TCCGCCGTTAACGACCCACCAACCGTTGAGTATCTGGGGGTGAATCCGTC
GATGCCGAGGATGAGGAAATGGATTCCGTCCGTCTTGAGAGCGGTGGAAG
GAAACAAGGAAACGAAAGCGCTGCTCTTCTCTCCCTCCCTCCCTTCTTCC
CAACCTCTAATTTTATTCTGGAACACGCGTTTCACATTTCCCGGTCTCGC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTCCCTCCCTCCCTCCCT
CAGTACAAGGACAAAGTAAACTTCGTGGTCATCGACGGGGATGGCCGCGA
TCAGGCTTCTGCCGGCCTAGTGGAACGGTTTCGAGTCGATGGCATCCCCC
ATCTCGCCCTCATGACAAATGAGGGGGAGGTCAAGACCGCCCTGATAGGT
GCGTGTCTTTCCCTCCCTCTCTCCCTTCCTTCCTCCCTCCCTCCCTCCCT
CCTTCCTTCCCTTTCTACTGACTTTGCAAAGGCGCCATTTCGGAGAAATG
GAAGATCAGATGCCGGCACCCATTCCAGCCTTCCCTCCCTACCTTGTTTC
TACCTCCCTTCTTTTTCTTCCCTACCCTCCCTCGCCCTTTCCCGCCTGCT
CATCCCTCTCCCCCTCCCCTTCCCTTCCCCCCTCCCCTCTCTCCCTCTTC
TCAGGCAAGGTCCCAAAGAAGGTTCTAGAAGCGGACATTGATTCGTTGAT
AGCCGGGCGTGCCCTCCCTTATGAAGGCTACGATGCCTTCGAGGACGACA
ATCACTTTGTCACCTTTTGATCAATCAATTTTATTTATAGAGGAGGACGA
TGGGGAAGGAAGGCATAGTCTTAAAGGTTAACCTGTTGAGGACATGAATG
AGGAAGGGGCAGGACACCGCTCTCCTCCCTTTCTTTATTTGTTTGTGTCT
TATCGTTTGATATGAGAGGGGAGAGAGGGAGAGGTATAGAGTGGGGGAGG
AGAAGAGGGAGAGGTAGGCGTGAAGAACAACTTCAAAATGATGGGGAAGG
TATGAGTAAGACGTAAGCATAAAAAGTAGCGACGGTGAAAGAGAAAAGGC
ACCAGCGGTAGCAGCAGCCGCGACAGCAGTAGCAGTAGAGAACCACCAGC
ATTAACATGAAGAAAGGAGAAAAAAGGATGAGGGAGGAGGGAGGGAGGGA
GGCTGACTAGGACAATGAAAGTGAACAAAATATTGATTTTGGGGAGGCAA
TGGTTTATGACAAGGAGAATGACAGGGAATAGAGGAGGAGGAGAAATAGG
AGGAGGAGGAGGATGAGGAGGAGGATGAGGAGGATGAGCGACAAGCATAG
TTTTCCCTTTTATTCGAGTTTATTTAAACCGAGC

Coding sequence (CDS) from alignment at scaffold_22:395045..397478+

>mRNA_8001 ID=mRNA_8001|Name=jgi.p|Nanoce1779_2|600869|organism=Nannochloropsis oceanica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_22:395045..397478+ (Nannochloropsis oceanica)
ATGATCATCCGATCGAGACGAAGGCCACGGCGACAACAGCAGCAACAACA
ATATCTACAACAAGGACAGCAACCACACTACTCCATTCTCCTCCTCTCCC
TCGTCCTCCTCGCTTGCCAAGTCTCCTCCTTCGTCCTCCCCTTCCCCGCC
CTTCCCTCCCCCTCCTCCTCAAGAAGAACAGCCTCTACATCCTCCCCTCG
CCCTCCCTCCTCCTCGACCTTGCCCCTCACCAGCGTCACAATCAGGAGGA
ATAGAATAGGAGATGGCCGTCGACCCTCATCATGCCTTTCACGAGGCCTA
CCTCAAGCCATGTTCGGGACCGCGGAAGGGGGGGATGCTGGGACGGAGGA
AGACCGACGAGCCGAAGGAGCACGAAGATTGGCGGCGGAGCTGGAAAAGG
AGAGGGTGCAAGTGGACGCCGCGAATGCCATGGAGAGAATGAAGAAGGAA
CTTGCCCAAGAGAAAAGGCAGAAAATCATCACGGCGGTGGGTTCTGTCCT
AGGTGCGGTCGCCCTTTTCTTCTACCAGCATACACACCCAGTGGAGGCCA
TTACTATTCTAAGAAAAATGCAGTCGGAAAGTCCCACCATCCAGATGGTC
GTTGGAAACGGCCGACCAACCGTTGTGGATTTTTATGCCGAGTGGTGCGA
AAACTGCAAGGAGATGGCTCCCGTGCTTCGGGCCGTCGAGAGCAAGTACA
AGGACAAAGTAAACTTCGTGGTCATCGACGGGGATGGCCGCGATCAGGCT
TCTGCCGGCCTAGTGGAACGGTTTCGAGTCGATGGCATCCCCCATCTCGC
CCTCATGACAAATGAGGGGGAGGTCAAGACCGCCCTGATAGGTGCGTGTC
TTTCCCTCCCTCTCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCTTCCT
TCCCTTTCTACTGACTTTGCAAAGGCGCCATTTCGGAGAAATGGAAGATC
AGATGCCGGCACCCATTCCAGCCTTCCCTCCCTACCTTGTTTCTACCTCC
CTTCTTTTTCTTCCCTACCCTCCCTCGCCCTTTCCCGCCTGCTCATCCCT
CTCCCCCTCCCCTTCCCTTCCCCCCTCCCCTCTCTCCCTCTTCTCAGGCA
AGGTCCCAAAGAAGGTTCTAGAAGCGGACATTGAATGATCATCCGATCGA
GACGAAGGCCACGGCGACAACAGCAGCAACAACAATATCTACAACAAGGA
CAGCAACCACACTACTCCATTCTCCTCCTCTCCCTCGTCCTCCTCGCTTG
CCAAGTCTCCTCCTTCGTCCTCCCCTTCCCCGCCCTTCCCTCCCCCTCCT
CCTCAAGAAGAACAGCCTCTACATCCTCCCCTCGCCCTCCCTCCTCCTCG
ACCTTGCCCCTCACCAGCGTCACAATCAGGAGGAATAGAATAGGAGATGG
CCGTCGACCCTCATCATGCCTTTCACGAGGCCTACCTCAAGCCATGTTCG
GGACCGCGGAAGGGGGGGATGCTGGGACGGAGGAAGACCGACGAGCCGAA
GGAGCACGAAGATTGGCGGCGGAGCTGGAAAAGGAGAGGGTGCAAGTGGA
CGCCGCGAATGCCATGGAGAGAATGAAGAAGGAACTTGCCCAAGAGAAAA
GGCAGAAAATCATCACGGCGGTGGGTTCTGTCCTAGGTGCGGTCGCCCTT
TTCTTCTACCAGCATACACACCCAGTGGAGGCCATTACTATTCTAAGAAA
AATGCAGTCGGAAAGTCCCACCATCCAGATGGTCGTTGGAAACGGCCGAC
CAACCGTTGTGGATTTTTATGCCGAGTGGTGCGAAAACTGCAAGGAGATG
GCTCCCGTGCTTCGGGCCGTCGAGAGCAAGTACAAGGACAAAGTAAACTT
CGTGGTCATCGACGGGGATGGCCGCGATCAGGCTTCTGCCGGCCTAGTGG
AACGGTTTCGAGTCGATGGCATCCCCCATCTCGCCCTCATGACAAATGAG
GGGGAGGTCAAGACCGCCCTGATAGGTGCGTGTCTTTCCCTCCCTCTCTC
CCTTCCTTCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTTTCTACTGACT
TTGCAAAGGCGCCATTTCGGAGAAATGGAAGATCAGATGCCGGCACCCAT
TCCAGCCTTCCCTCCCTACCTTGTTTCTACCTCCCTTCTTTTTCTTCCCT
ACCCTCCCTCGCCCTTTCCCGCCTGCTCATCCCTCTCCCCCTCCCCTTCC
CTTCCCCCCTCCCCTCTCTCCCTCTTCTCAGGCAAGGTCCCAAAGAAGGT
TCTAGAAGCGGACATTGAATGATCATCCGATCGAGACGAAGGCCACGGCG
ACAACAGCAGCAACAACAATATCTACAACAAGGACAGCAACCACACTACT
CCATTCTCCTCCTCTCCCTCGTCCTCCTCGCTTGCCAAGTCTCCTCCTTC
GTCCTCCCCTTCCCCGCCCTTCCCTCCCCCTCCTCCTCAAGAAGAACAGC
CTCTACATCCTCCCCTCGCCCTCCCTCCTCCTCGACCTTGCCCCTCACCA
GCGTCACAATCAGGAGGAATAGAATAGGAGATGGCCGTCGACCCTCATCA
TGCCTTTCACGAGGCCTACCTCAAGCCATGTTCGGGACCGCGGAAGGGGG
GGATGCTGGGACGGAGGAAGACCGACGAGCCGAAGGAGCACGAAGATTGG
CGGCGGAGCTGGAAAAGGAGAGGGTGCAAGTGGACGCCGCGAATGCCATG
GAGAGAATGAAGAAGGAACTTGCCCAAGAGAAAAGGCAGAAAATCATCAC
GGCGGTGGGTTCTGTCCTAGGTGCGGTCGCCCTTTTCTTCTACCAGCATA
CACACCCAGTGGAGGCCATTACTATTCTAAGAAAAATGCAGTCGGAAAGT
CCCACCATCCAGATGGTCGTTGGAAACGGCCGACCAACCGTTGTGGATTT
TTATGCCGAGTGGTGCGAAAACTGCAAGGAGATGGCTCCCGTGCTTCGGG
CCGTCGAGAGCAAGTACAAGGACAAAGTAAACTTCGTGGTCATCGACGGG
GATGGCCGCGATCAGGCTTCTGCCGGCCTAGTGGAACGGTTTCGAGTCGA
TGGCATCCCCCATCTCGCCCTCATGACAAATGAGGGGGAGGTCAAGACCG
CCCTGATAGGTGCGTGTCTTTCCCTCCCTCTCTCCCTTCCTTCCTCCCTC
CCTCCCTCCCTCCTTCCTTCCCTTTCTACTGACTTTGCAAAGGCGCCATT
TCGGAGAAATGGAAGATCAGATGCCGGCACCCATTCCAGCCTTCCCTCCC
TACCTTGTTTCTACCTCCCTTCTTTTTCTTCCCTACCCTCCCTCGCCCTT
TCCCGCCTGCTCATCCCTCTCCCCCTCCCCTTCCCTTCCCCCCTCCCCTC
TCTCCCTCTTCTCAGGCAAGGTCCCAAAGAAGGTTCTAGAAGCGGACATT
GAATGATCATCCGATCGAGACGAAGGCCACGGCGACAACAGCAGCAACAA
CAATATCTACAACAAGGACAGCAACCACACTACTCCATTCTCCTCCTCTC
CCTCGTCCTCCTCGCTTGCCAAGTCTCCTCCTTCGTCCTCCCCTTCCCCG
CCCTTCCCTCCCCCTCCTCCTCAAGAAGAACAGCCTCTACATCCTCCCCT
CGCCCTCCCTCCTCCTCGACCTTGCCCCTCACCAGCGTCACAATCAGGAG
GAATAGAATAGGAGATGGCCGTCGACCCTCATCATGCCTTTCACGAGGCC
TACCTCAAGCCATGTTCGGGACCGCGGAAGGGGGGGATGCTGGGACGGAG
GAAGACCGACGAGCCGAAGGAGCACGAAGATTGGCGGCGGAGCTGGAAAA
GGAGAGGGTGCAAGTGGACGCCGCGAATGCCATGGAGAGAATGAAGAAGG
AACTTGCCCAAGAGAAAAGGCAGAAAATCATCACGGCGGTGGGTTCTGTC
CTAGGTGCGGTCGCCCTTTTCTTCTACCAGCATACACACCCAGTGGAGGC
CATTACTATTCTAAGAAAAATGCAGTCGGAAAGTCCCACCATCCAGATGG
TCGTTGGAAACGGCCGACCAACCGTTGTGGATTTTTATGCCGAGTGGTGC
GAAAACTGCAAGGAGATGGCTCCCGTGCTTCGGGCCGTCGAGAGCAAGTA
CAAGGACAAAGTAAACTTCGTGGTCATCGACGGGGATGGCCGCGATCAGG
CTTCTGCCGGCCTAGTGGAACGGTTTCGAGTCGATGGCATCCCCCATCTC
GCCCTCATGACAAATGAGGGGGAGGTCAAGACCGCCCTGATAGGTGCGTG
TCTTTCCCTCCCTCTCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCTTC
CTTCCCTTTCTACTGACTTTGCAAAGGCGCCATTTCGGAGAAATGGAAGA
TCAGATGCCGGCACCCATTCCAGCCTTCCCTCCCTACCTTGTTTCTACCT
CCCTTCTTTTTCTTCCCTACCCTCCCTCGCCCTTTCCCGCCTGCTCATCC
CTCTCCCCCTCCCCTTCCCTTCCCCCCTCCCCTCTCTCCCTCTTCTCAGG
CAAGGTCCCAAAGAAGGTTCTAGAAGCGGACATTGA

Synonyms

Publications