jgi.p|Nanoce1779_2|600850, mRNA_8000 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600850
Unique NamemRNA_8000
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length780
Alignment locationscaffold_22:382217..383746 +

Link to JBrowse

Properties
Property NameValue
TranscriptId600936
TrackFilteredModels2
ProteinId600850
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:382217..383746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600850gene_8000Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600850mRNA_8000-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8000CDS_8000Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8000 ID=mRNA_8000|Name=jgi.p|Nanoce1779_2|600850|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
AGTACGGTTACAATGAAACTCTCCCTTCTTCTCCTCGTGGCCCTGGCCAG
CGCCTCCCAAGCTTTCCTTCTGCCTTCCTACTCCTACTCCTCCTCCCGGC
CCTTGACAACATGCCGTCGGGCGACCGAGGGCGACGCCCCTGCCAGCGAT
GATGCCGCCGCAGCTCCCGCATCCGCCCCTGCCCCTACCAAATCCTTTAA
GGGCTTCGGGGAGAAACCGACGAAGAAAGCCCCCCCCCCAAAGACAAAAG
GGCAGTTGGAGAGGGAAAAGTATGCGTCGGCCTACGACACACTGGCCTCC
AAGGGCGTGCCCGAATACGCCGTCTACATCAAAGAAGCAGAGGCCGGAGA
GAAGGATTGGAAGTTCGTGGGCTCCATGGCCGTGCCCCGTAACGCCAAGG
TGGATCAAGCCATTTATGAGAACGAGCCCAACCTCGTCAAGGGCGCCTTC
AAGCTTCACCCCAAGCTGGTGGGCAAGGAGAAGGCCGGCTTCACCTACGG
CTACAACCTCAAGAAATTCCCCGACGAACCCATCAAGGTGGCCGTCAAGC
CCGTGGAAGGCAGTGGCCCCAAGAACCCTGTCATTGGCTGGCTCGAGAAT
GTTATGAGTCCCCTCGACGCCTCGAACTTGAAGGGGAATTAAGGGATTGA
TGGGAGAAAGGAAGGAAGCGATGGAAGGTGACAGGGGGTGGGCAATGGGA
GAAAAGAGGGGTTCAGAATGAAGGAAGCAATGGAATCGTTTTCAGTGTCA
TCGGCACGGGAGAGGATAGGAAGGAGATAG
back to top

protein sequence of jgi.p|Nanoce1779_2|600850

>mRNA_8000-protein ID=mRNA_8000-protein|Name=jgi.p|Nanoce1779_2|600850|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MKLSLLLLVALASASQAFLLPSYSYSSSRPLTTCRRATEGDAPASDDAAA
APASAPAPTKSFKGFGEKPTKKAPPPKTKGQLEREKYASAYDTLASKGVP
EYAVYIKEAEAGEKDWKFVGSMAVPRNAKVDQAIYENEPNLVKGAFKLHP
KLVGKEKAGFTYGYNLKKFPDEPIKVAVKPVEGSGPKNPVIGWLENVMSP
LDASNLKGN*
back to top

mRNA from alignment at scaffold_22:382217..383746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8000 ID=mRNA_8000|Name=jgi.p|Nanoce1779_2|600850|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at scaffold_22:382217..383746+ (Nannochloropsis oceanica)
AGTACGGTTACAATGAAACTCTCCCTTCTTCTCCTCGTGGCCCTGGCCAG
CGCCTCCCAAGCTTTCCTTCTGCCTTCCTACTCCTACTCCTCCTCCCGGC
CCTTGACAACATGCCGTCGGGCGACCGGTATGTATATTGCGTCCTCGGTG
CCCTATAGCCCCCCCCTCCTTCCCTTCTCCTTATGCATGTTGACACTAGC
CGCAGCTCCCATTTGTGCTTCCCATTTGCACTCTCTCGGTGGATGAGGGA
CGGCTGCGTGCCTCGATCTAATCCTCCCATCCTTCCTCACCCGTACCCTC
CCACATGCAGAGGGCGACGCCCCTGCCAGCGATGATGCCGCCGCAGCTCC
CGCATCCGCCCCTGCCCCTACCAAATCCTTTAAGGGCTTCGGGGAGAAAC
CGACGAAGAAAGCCCCCCCCCCAAAGACAAAAGGGCAGTTGGAGAGGGAA
AAGTATGCGTCGGCCTACGACACACTGGCCTCCAAGGGCGTGCCCGAATA
CGCCGTCTACATCAAAGAAGCAGAGGCCGGAGAGAAGGATTGGAAGTTCG
TGGGCTCCATGGCCGTGCCCCGTAACGCCAAGGTGGATCAAGCCATTTAT
GAGAACGAGGTGCGTCTTCGTCCGATCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCGTCCTCCCACTGGGTGATT
CCGTGGAACAGACTGTCCTTCTCCTCCCCCTCCTCCCCTTCCCCCTCCTC
CCCCTCCTCCTCTTCCTCCTTTTCCTCCTCGTTTGCACACCGTCTACTTC
TCATTATTCCCGCCGGCTTGGATCACCAAAGGCACCTCACACCTCACACC
TCCCTTCTTCCCTCCCTATTCTCCTTCTCCTCCCTCCCCCCAGCCCAACC
TCGTCAAGGGCGCCTTCAAGCTTCACCCCAAGCTGGTGGGCAAGGAGAAG
GCCGGCTTCACCTACGGCTACAACCTCAAGAAATTCCCCGACGAACCCAT
CAAGGTACCTACCTACCTTCCTCCCTCTCCCCCTCCCTCCCTTCCTATTT
CCATTCGTTGCCTACCACCTATCTCCCTCTCTGCACGCCATGCCTCCCCT
GCTTCCCTCCCTCCCTGCTTCCCTTCCTCCCTGCTCAGTACCGGGGCCAG
TAATCCCACTATTGGCTGAGGCTCCCTCTTCCCCTCCTTCCCTCCTTCCC
TCCCTCCCTCCCTCTTTGGCTTGACTTCAACCTTACTTCCCTTTCTCCCC
CCCCCCTCTCCCTCACTCCCTTCACCCCTCCCGGCAGGTGGCCGTCAAGC
CCGTGGAAGGCAGTGGCCCCAAGAACCCTGTCATTGGCTGGCTCGAGAAT
GTTATGAGTCCCCTCGACGCCTCGAACTTGAAGGGGAATTAAGGGATTGA
TGGGAGAAAGGAAGGAAGCGATGGAAGGTGACAGGGGGTGGGCAATGGGA
GAAAAGAGGGGTTCAGAATGAAGGAAGCAATGGAATCGTTTTCAGTGTCA
TCGGCACGGGAGAGGATAGGAAGGAGATAG
back to top

Coding sequence (CDS) from alignment at scaffold_22:382217..383746+

>mRNA_8000 ID=mRNA_8000|Name=jgi.p|Nanoce1779_2|600850|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_22:382217..383746+ (Nannochloropsis oceanica)
ATGAAACTCTCCCTTCTTCTCCTCGTGGCCCTGGCCAGCGCCTCCCAAGC
TTTCCTTCTGCCTTCCTACTCCTACTCCTCCTCCCGGCCCTTGACAACAT
GCCGTCGGGCGACCGAGGGCGACGCCCCTGCCAGCGATGATGCCGCCGCA
GCTCCCGCATCCGCCCCTGCCCCTACCAAATCCTTTAAGGGCTTCGGGGA
GAAACCGACGAAGAAAGCCCCCCCCCCAAAGACAAAAGGGCAGTTGGAGA
GGGAAAAGTATGCGTCGGCCTACGACACACTGGCCTCCAAGGGCGTGCCC
GAATACGCCGTCTACATCAAAGAAGCAGAGGCCGGAGAGAAGGATTGGAA
GTTCGTGGGCTCCATGGCCGTGCCCCGTAACGCCAAGGTGGATCAAGCCA
TTTATGAGAACGAGCCCAACCTCGTCAAGGGCGCCTTCAAGCTTCACCCC
AAGCTGGTGGGCAAGGAGAAGGCCGGCTTCACCTACGGCTACAACCTCAA
GAAATTCCCCGACGAACCCATCAAGGTGGCCGTCAAGCCCGTGGAAGGCA
GTGGCCCCAAGAACCCTGTCATTGGCTGGCTCGAGAATGTTATGAGTCCC
CTCGACGCCTCGAACTTGAAGGGGAATTAAATGAAACTCTCCCTTCTTCT
CCTCGTGGCCCTGGCCAGCGCCTCCCAAGCTTTCCTTCTGCCTTCCTACT
CCTACTCCTCCTCCCGGCCCTTGACAACATGCCGTCGGGCGACCGAGGGC
GACGCCCCTGCCAGCGATGATGCCGCCGCAGCTCCCGCATCCGCCCCTGC
CCCTACCAAATCCTTTAAGGGCTTCGGGGAGAAACCGACGAAGAAAGCCC
CCCCCCCAAAGACAAAAGGGCAGTTGGAGAGGGAAAAGTATGCGTCGGCC
TACGACACACTGGCCTCCAAGGGCGTGCCCGAATACGCCGTCTACATCAA
AGAAGCAGAGGCCGGAGAGAAGGATTGGAAGTTCGTGGGCTCCATGGCCG
TGCCCCGTAACGCCAAGGTGGATCAAGCCATTTATGAGAACGAGCCCAAC
CTCGTCAAGGGCGCCTTCAAGCTTCACCCCAAGCTGGTGGGCAAGGAGAA
GGCCGGCTTCACCTACGGCTACAACCTCAAGAAATTCCCCGACGAACCCA
TCAAGGTGGCCGTCAAGCCCGTGGAAGGCAGTGGCCCCAAGAACCCTGTC
ATTGGCTGGCTCGAGAATGTTATGAGTCCCCTCGACGCCTCGAACTTGAA
GGGGAATTAAATGAAACTCTCCCTTCTTCTCCTCGTGGCCCTGGCCAGCG
CCTCCCAAGCTTTCCTTCTGCCTTCCTACTCCTACTCCTCCTCCCGGCCC
TTGACAACATGCCGTCGGGCGACCGAGGGCGACGCCCCTGCCAGCGATGA
TGCCGCCGCAGCTCCCGCATCCGCCCCTGCCCCTACCAAATCCTTTAAGG
GCTTCGGGGAGAAACCGACGAAGAAAGCCCCCCCCCCAAAGACAAAAGGG
CAGTTGGAGAGGGAAAAGTATGCGTCGGCCTACGACACACTGGCCTCCAA
GGGCGTGCCCGAATACGCCGTCTACATCAAAGAAGCAGAGGCCGGAGAGA
AGGATTGGAAGTTCGTGGGCTCCATGGCCGTGCCCCGTAACGCCAAGGTG
GATCAAGCCATTTATGAGAACGAGCCCAACCTCGTCAAGGGCGCCTTCAA
GCTTCACCCCAAGCTGGTGGGCAAGGAGAAGGCCGGCTTCACCTACGGCT
ACAACCTCAAGAAATTCCCCGACGAACCCATCAAGGTGGCCGTCAAGCCC
GTGGAAGGCAGTGGCCCCAAGAACCCTGTCATTGGCTGGCTCGAGAATGT
TATGAGTCCCCTCGACGCCTCGAACTTGAAGGGGAATTAAATGAAACTCT
CCCTTCTTCTCCTCGTGGCCCTGGCCAGCGCCTCCCAAGCTTTCCTTCTG
CCTTCCTACTCCTACTCCTCCTCCCGGCCCTTGACAACATGCCGTCGGGC
GACCGAGGGCGACGCCCCTGCCAGCGATGATGCCGCCGCAGCTCCCGCAT
CCGCCCCTGCCCCTACCAAATCCTTTAAGGGCTTCGGGGAGAAACCGACG
AAGAAAGCCCCCCCCCCAAAGACAAAAGGGCAGTTGGAGAGGGAAAAGTA
TGCGTCGGCCTACGACACACTGGCCTCCAAGGGCGTGCCCGAATACGCCG
TCTACATCAAAGAAGCAGAGGCCGGAGAGAAGGATTGGAAGTTCGTGGGC
TCCATGGCCGTGCCCCGTAACGCCAAGGTGGATCAAGCCATTTATGAGAA
CGAGCCCAACCTCGTCAAGGGCGCCTTCAAGCTTCACCCCAAGCTGGTGG
GCAAGGAGAAGGCCGGCTTCACCTACGGCTACAACCTCAAGAAATTCCCC
GACGAACCCATCAAGGTGGCCGTCAAGCCCGTGGAAGGCAGTGGCCCCAA
GAACCCTGTCATTGGCTGGCTCGAGAATGTTATGAGTCCCCTCGACGCCT
CGAACTTGAAGGGGAATTAA
back to top
Synonyms
Publications