jgi.p|Nanoce1779_2|574187, mRNA_800 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574187
Unique NamemRNA_800
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length829
Alignment locationscaffold_2:461294..462122 -

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Properties
Property NameValue
TranscriptId574273
TrackFilteredModels2
ProteinId574187
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:461294..462122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574187gene_800Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574187mRNA_800-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_800CDS_800Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_800 ID=mRNA_800|Name=jgi.p|Nanoce1779_2|574187|organism=Nannochloropsis oceanica|type=mRNA|length=829bp
ACAGTTTGACTTGACGCTGTGGACGCCAGAAAGCATCGTCTCGAACACCT
TTCCAGCAGTGCCCGCCACAACCTAATCGTCCCGCGGCAAGCCCCAGTCG
TATCTCCCATCTCCCTCCTTCCAGCCCACGACTCCCTCTCCACCACCCCC
GGCCCCCCCAAAGTAAACATGAGCGGTCCTTTTGTACGGATGCTAGTCAA
CATCGCCGTCATGTCTGCATCCGTCTTTTCCCGTGCATTTGTGGCAGCAT
ATCATCAGGCCTTGCAAAATGCCAAGCAAGGTGGGGGCACGGCCGCCAAG
GCCGCCTCCCGGACTTATGGAGGGATGGCCCCGGACGAAGCCCTCAAGGT
CCTGAATTTGCAAAAGACAGATATGAAAAACCCAGCACGATTGATCGAGC
AATTTGACAAGTACTTTATGCAGAATGAGCCGGGTAAGGGGGGATCGTTT
TATTTGCAGTCAAAGGTGTATCGGGCGAAAGAGTGCTTGGAGAAGGCGAT
CGAGGAAGAGCGGGGGAAGGCCGCCAAGGCCAAAGCGGAAGCAGATGATG
CCCGGAAAGCAAACAAAAGTAAAGTGGGAGGGAAGTCACCATGAGGAGAT
GCAGAGAAGGATAGAAGGGTAGTCGAGGTAAAAGAAACGGCAAATGTATA
AATGAAATTTTTAATTTTCTGACCACGGAGGAAAAATTGCCACTTTTGCT
TCGAGATTCCCTCTCTGCTTTGATTTACACATGTGCTTATGGGTGGATGT
GTGGTTGTGCGCCCACATACATAGGGGAATGGACCAAACTGCGCCGTAAA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAG
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protein sequence of jgi.p|Nanoce1779_2|574187

>mRNA_800-protein ID=mRNA_800-protein|Name=jgi.p|Nanoce1779_2|574187|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTY
GGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKV
YRAKECLEKAIEEERGKAAKAKAEADDARKANKSKVGGKSP*
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mRNA from alignment at scaffold_2:461294..462122-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_800 ID=mRNA_800|Name=jgi.p|Nanoce1779_2|574187|organism=Nannochloropsis oceanica|type=mRNA|length=829bp|location=Sequence derived from alignment at scaffold_2:461294..462122- (Nannochloropsis oceanica)
ACAGTTTGACTTGACGCTGTGGACGCCAGAAAGCATCGTCTCGAACACCT
TTCCAGCAGTGCCCGCCACAACCTAATCGTCCCGCGGCAAGCCCCAGTCG
TATCTCCCATCTCCCTCCTTCCAGCCCACGACTCCCTCTCCACCACCCCC
GGCCCCCCCAAAGTAAACATGAGCGGTCCTTTTGTACGGATGCTAGTCAA
CATCGCCGTCATGTCTGCATCCGTCTTTTCCCGTGCATTTGTGGCAGCAT
ATCATCAGGCCTTGCAAAATGCCAAGCAAGGTGGGGGCACGGCCGCCAAG
GCCGCCTCCCGGACTTATGGAGGGATGGCCCCGGACGAAGCCCTCAAGGT
CCTGAATTTGCAAAAGACAGATATGAAAAACCCAGCACGATTGATCGAGC
AATTTGACAAGTACTTTATGCAGAATGAGCCGGGTAAGGGGGGATCGTTT
TATTTGCAGTCAAAGGTGTATCGGGCGAAAGAGTGCTTGGAGAAGGCGAT
CGAGGAAGAGCGGGGGAAGGCCGCCAAGGCCAAAGCGGAAGCAGATGATG
CCCGGAAAGCAAACAAAAGTAAAGTGGGAGGGAAGTCACCATGAGGAGAT
GCAGAGAAGGATAGAAGGGTAGTCGAGGTAAAAGAAACGGCAAATGTATA
AATGAAATTTTTAATTTTCTGACCACGGAGGAAAAATTGCCACTTTTGCT
TCGAGATTCCCTCTCTGCTTTGATTTACACATGTGCTTATGGGTGGATGT
GTGGTTGTGCGCCCACATACATAGGGGAATGGACCAAACTGCGCCGTAAA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAG
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Coding sequence (CDS) from alignment at scaffold_2:461294..462122-

>mRNA_800 ID=mRNA_800|Name=jgi.p|Nanoce1779_2|574187|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_2:461294..462122- (Nannochloropsis oceanica)
ATGAGCGGTCCTTTTGTACGGATGCTAGTCAACATCGCCGTCATGTCTGC
ATCCGTCTTTTCCCGTGCATTTGTGGCAGCATATCATCAGGCCTTGCAAA
ATGCCAAGCAAGGTGGGGGCACGGCCGCCAAGGCCGCCTCCCGGACTTAT
GGAGGGATGGCCCCGGACGAAGCCCTCAAGGTCCTGAATTTGCAAAAGAC
AGATATGAAAAACCCAGCACGATTGATCGAGCAATTTGACAAGTACTTTA
TGCAGAATGAGCCGGGTAAGGGGGGATCGTTTTATTTGCAGTCAAAGGTG
TATCGGGCGAAAGAGTGCTTGGAGAAGGCGATCGAGGAAGAGCGGGGGAA
GGCCGCCAAGGCCAAAGCGGAAGCAGATGATGCCCGGAAAGCAAACAAAA
GTAAAGTGGGAGGGAAGTCACCATGA
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Synonyms
Publications