jgi.p|Nanoce1779_2|627611, mRNA_80 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627611
Unique NamemRNA_80
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length626
Alignment locationscaffold_3:213294..213919 -

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Properties
Property NameValue
TranscriptId627697
TrackFilteredModels2
ProteinId627611
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:213294..213919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627611gene_80Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627611mRNA_80-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_80CDS_80Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_80 ID=mRNA_80|Name=jgi.p|Nanoce1779_2|627611|organism=Nannochloropsis oceanica|type=mRNA|length=626bp
ATGTCCCGCCCTTCTCCCGCTTTTGCCACAACTCCCGCAGCCGCCGCCGC
TGCCACCTTCACAGTGCCCAATGTCTTGTCCACATCTTCTCCAGCCTTGC
GAAATATTGCGGTTTCTGTCAACAAACCGAGCCGCGCTTTCTTTAATATT
GCACGAAAGGCTATGTTGGAAGGGGTGGACGTTGTGCAGCTCTCAGCTTT
GGAATCTGCTATTGCTATTGCCATTGACACAACCTTCCTTCTGACTAGCG
CTACTATGGCCGAGATTGAAAGCATCGAGACGGCCTTTGTCGACGTCCCT
TATTACCACCTTGGTCCTAGGCAGCAGCAGGAGCATCACCACCACCACAT
GGCCCGTAAGGCCCGCATGACGATCCGTTTGCGCAAGACGGACACTTTCC
GAGAGTACGCACGGATACGTCAAGAGCAATTTATTGGAATCGAAGAATTC
GAGGAAGATGATTGAAGAAATTGGGAGGGGAATGTGAAAACACGTGGCCG
AAAGAAAAAAAGGACCGAGAAAGACAAATGAGGCAAGATCTACATCTCAA
TAACAATAAAGTCCGGCTCCAAGGAGCATGAATCTCCTTACACCACTCTT
GAAGACAATTCATCACGACGTTGTGG
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protein sequence of jgi.p|Nanoce1779_2|627611

>mRNA_80-protein ID=mRNA_80-protein|Name=jgi.p|Nanoce1779_2|627611|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MSRPSPAFATTPAAAAAATFTVPNVLSTSSPALRNIAVSVNKPSRAFFNI
ARKAMLEGVDVVQLSALESAIAIAIDTTFLLTSATMAEIESIETAFVDVP
YYHLGPRQQQEHHHHHMARKARMTIRLRKTDTFREYARIRQEQFIGIEEF
EEDD*
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mRNA from alignment at scaffold_3:213294..213919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_80 ID=mRNA_80|Name=jgi.p|Nanoce1779_2|627611|organism=Nannochloropsis oceanica|type=mRNA|length=626bp|location=Sequence derived from alignment at scaffold_3:213294..213919- (Nannochloropsis oceanica)
ATGTCCCGCCCTTCTCCCGCTTTTGCCACAACTCCCGCAGCCGCCGCCGC
TGCCACCTTCACAGTGCCCAATGTCTTGTCCACATCTTCTCCAGCCTTGC
GAAATATTGCGGTTTCTGTCAACAAACCGAGCCGCGCTTTCTTTAATATT
GCACGAAAGGCTATGTTGGAAGGGGTGGACGTTGTGCAGCTCTCAGCTTT
GGAATCTGCTATTGCTATTGCCATTGACACAACCTTCCTTCTGACTAGCG
CTACTATGGCCGAGATTGAAAGCATCGAGACGGCCTTTGTCGACGTCCCT
TATTACCACCTTGGTCCTAGGCAGCAGCAGGAGCATCACCACCACCACAT
GGCCCGTAAGGCCCGCATGACGATCCGTTTGCGCAAGACGGACACTTTCC
GAGAGTACGCACGGATACGTCAAGAGCAATTTATTGGAATCGAAGAATTC
GAGGAAGATGATTGAAGAAATTGGGAGGGGAATGTGAAAACACGTGGCCG
AAAGAAAAAAAGGACCGAGAAAGACAAATGAGGCAAGATCTACATCTCAA
TAACAATAAAGTCCGGCTCCAAGGAGCATGAATCTCCTTACACCACTCTT
GAAGACAATTCATCACGACGTTGTGG
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Coding sequence (CDS) from alignment at scaffold_3:213294..213919-

>mRNA_80 ID=mRNA_80|Name=jgi.p|Nanoce1779_2|627611|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_3:213294..213919- (Nannochloropsis oceanica)
ATGTCCCGCCCTTCTCCCGCTTTTGCCACAACTCCCGCAGCCGCCGCCGC
TGCCACCTTCACAGTGCCCAATGTCTTGTCCACATCTTCTCCAGCCTTGC
GAAATATTGCGGTTTCTGTCAACAAACCGAGCCGCGCTTTCTTTAATATT
GCACGAAAGGCTATGTTGGAAGGGGTGGACGTTGTGCAGCTCTCAGCTTT
GGAATCTGCTATTGCTATTGCCATTGACACAACCTTCCTTCTGACTAGCG
CTACTATGGCCGAGATTGAAAGCATCGAGACGGCCTTTGTCGACGTCCCT
TATTACCACCTTGGTCCTAGGCAGCAGCAGGAGCATCACCACCACCACAT
GGCCCGTAAGGCCCGCATGACGATCCGTTTGCGCAAGACGGACACTTTCC
GAGAGTACGCACGGATACGTCAAGAGCAATTTATTGGAATCGAAGAATTC
GAGGAAGATGATTGA
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Synonyms
Publications