jgi.p|Nanoce1779_2|575836, mRNA_8 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575836
Unique NamemRNA_8
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length788
Alignment locationscaffold_3:18392..19179 -

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Properties
Property NameValue
TranscriptId575922
TrackFilteredModels2
ProteinId575836
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:18392..19179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575836gene_8Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8CDS_8Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575836mRNA_8-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8 ID=mRNA_8|Name=jgi.p|Nanoce1779_2|575836|organism=Nannochloropsis oceanica|type=mRNA|length=788bp
ATGCCAGTGTCGGACGGTGGTCGCGGCAAAGCCGGGGCAGGCGGAGCGAC
AGAAGGTAAGGAGGACGGGGGAAGGGGGGGGGAGCTCGCTCGCCAGGTGA
CGGAGCGGCCTGCTGATGGTGGCGGGTGGGGTGACTGGGGAGAGGACGGT
GGAAGAGGAGGATTGTGGTGGCTGCTTTTTGATTCTTCTTGGTCACCGTG
CGACAATCCCGTCTCGATTTCTTGGAGCGTGGTAGAAGATGACGAAAAAT
CCTTTTGTTCATCGCTTCTGTTTGGTTGGGGACGCGCTGTAGTAGAGGAG
GAGGAGGACATGGCAGCTAAACCCCCTGCATCTTCGTCCTGCTGCTTCCT
GCTTTGTTGGACGAGGGGTCTTGGCATACCCATGTGCATGCTGACACTTG
ATACACTATCGTTGCTGCTGTTCTTCTTGAGAAACGCCAAAGGCATGACG
CGGGGAGTTGTGGAAGGGGAGGAAAAGGAAGGAGCAAGAGTAGGAGAGGA
CGCGTCTCCGTCCTGCTCCTCAGCGGAGACGGACGAGATCAAGGCCCTCC
CCGTATCCACATCCTCACCTCCTGCTCCTCCTGCTATCGAGCGTTCATTT
CCTCCTGCTCCTGTTTCTCTTCCTACCTCTGCATGGGCATCGTGGACTCC
TCCATCGGCGTTGTCGGGGGTGTCCAGTGCCGTCGCTGCAGCTGGCAATT
GCCGCTGTGGGCTGCAAGCATGGGGACTGTCGAATGGCGGTTTTTCCTCG
TTGTTACCTTCCATTAAAAAATGCACCGTGCTGTGGCT
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protein sequence of jgi.p|Nanoce1779_2|575836

>mRNA_8-protein ID=mRNA_8-protein|Name=jgi.p|Nanoce1779_2|575836|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MPVSDGGRGKAGAGGATEGKEDGGRGGELARQVTERPADGGGWGDWGEDG
GRGGLWWLLFDSSWSPCDNPVSISWSVVEDDEKSFCSSLLFGWGRAVVEE
EEDMAAKPPASSSCCFLLCWTRGLGIPMCMLTLDTLSLLLFFLRNAKGMT
RGVVEGEEKEGARVGEDASPSCSSAETDEIKALPVSTSSPPAPPAIERSF
PPAPVSLPTSAWASWTPPSALSGVSSAVAAAGNCRCGLQAWGLSNGGFSS
LLPSIKKCTVLW
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mRNA from alignment at scaffold_3:18392..19179-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8 ID=mRNA_8|Name=jgi.p|Nanoce1779_2|575836|organism=Nannochloropsis oceanica|type=mRNA|length=788bp|location=Sequence derived from alignment at scaffold_3:18392..19179- (Nannochloropsis oceanica)
ATGCCAGTGTCGGACGGTGGTCGCGGCAAAGCCGGGGCAGGCGGAGCGAC
AGAAGGTAAGGAGGACGGGGGAAGGGGGGGGGAGCTCGCTCGCCAGGTGA
CGGAGCGGCCTGCTGATGGTGGCGGGTGGGGTGACTGGGGAGAGGACGGT
GGAAGAGGAGGATTGTGGTGGCTGCTTTTTGATTCTTCTTGGTCACCGTG
CGACAATCCCGTCTCGATTTCTTGGAGCGTGGTAGAAGATGACGAAAAAT
CCTTTTGTTCATCGCTTCTGTTTGGTTGGGGACGCGCTGTAGTAGAGGAG
GAGGAGGACATGGCAGCTAAACCCCCTGCATCTTCGTCCTGCTGCTTCCT
GCTTTGTTGGACGAGGGGTCTTGGCATACCCATGTGCATGCTGACACTTG
ATACACTATCGTTGCTGCTGTTCTTCTTGAGAAACGCCAAAGGCATGACG
CGGGGAGTTGTGGAAGGGGAGGAAAAGGAAGGAGCAAGAGTAGGAGAGGA
CGCGTCTCCGTCCTGCTCCTCAGCGGAGACGGACGAGATCAAGGCCCTCC
CCGTATCCACATCCTCACCTCCTGCTCCTCCTGCTATCGAGCGTTCATTT
CCTCCTGCTCCTGTTTCTCTTCCTACCTCTGCATGGGCATCGTGGACTCC
TCCATCGGCGTTGTCGGGGGTGTCCAGTGCCGTCGCTGCAGCTGGCAATT
GCCGCTGTGGGCTGCAAGCATGGGGACTGTCGAATGGCGGTTTTTCCTCG
TTGTTACCTTCCATTAAAAAATGCACCGTGCTGTGGCT
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Coding sequence (CDS) from alignment at scaffold_3:18392..19179-

>mRNA_8 ID=mRNA_8|Name=jgi.p|Nanoce1779_2|575836|organism=Nannochloropsis oceanica|type=CDS|length=788bp|location=Sequence derived from alignment at scaffold_3:18392..19179- (Nannochloropsis oceanica)
ATGCCAGTGTCGGACGGTGGTCGCGGCAAAGCCGGGGCAGGCGGAGCGAC
AGAAGGTAAGGAGGACGGGGGAAGGGGGGGGGAGCTCGCTCGCCAGGTGA
CGGAGCGGCCTGCTGATGGTGGCGGGTGGGGTGACTGGGGAGAGGACGGT
GGAAGAGGAGGATTGTGGTGGCTGCTTTTTGATTCTTCTTGGTCACCGTG
CGACAATCCCGTCTCGATTTCTTGGAGCGTGGTAGAAGATGACGAAAAAT
CCTTTTGTTCATCGCTTCTGTTTGGTTGGGGACGCGCTGTAGTAGAGGAG
GAGGAGGACATGGCAGCTAAACCCCCTGCATCTTCGTCCTGCTGCTTCCT
GCTTTGTTGGACGAGGGGTCTTGGCATACCCATGTGCATGCTGACACTTG
ATACACTATCGTTGCTGCTGTTCTTCTTGAGAAACGCCAAAGGCATGACG
CGGGGAGTTGTGGAAGGGGAGGAAAAGGAAGGAGCAAGAGTAGGAGAGGA
CGCGTCTCCGTCCTGCTCCTCAGCGGAGACGGACGAGATCAAGGCCCTCC
CCGTATCCACATCCTCACCTCCTGCTCCTCCTGCTATCGAGCGTTCATTT
CCTCCTGCTCCTGTTTCTCTTCCTACCTCTGCATGGGCATCGTGGACTCC
TCCATCGGCGTTGTCGGGGGTGTCCAGTGCCGTCGCTGCAGCTGGCAATT
GCCGCTGTGGGCTGCAAGCATGGGGACTGTCGAATGGCGGTTTTTCCTCG
TTGTTACCTTCCATTAAAAAATGCACCGTGCTGTGGCT
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Synonyms
Publications