jgi.p|Nanoce1779_2|600840, mRNA_7998 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600840
Unique NamemRNA_7998
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_22:377901..379086 -

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Properties
Property NameValue
TranscriptId600926
TrackFilteredModels2
ProteinId600840
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:377901..379086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600840gene_7998Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600840mRNA_7998-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7998CDS_7998Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7998 ID=mRNA_7998|Name=jgi.p|Nanoce1779_2|600840|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
CAGGCTTTCCGGGGGTACGTGGCTGTCCAGAGAAAGTTCAAGCACGCCAC
TCGGGGACAATCAGAGCATCAGCGACCATGTCCTTCCTCCATGCGTCACC
CAGCAGTACTTCCGCGGCAACAGCTGCTGCTGTGGCCGCGACAGGGGGTG
CTCGAGCAGCACGGTCTCGTCTCCGCCAGCTGGCGGCATCTCTTCAATCG
TCCTCGTACATCACTGAGTCGCCACGAGGAAGCACCACGAACTGCAGTCC
CACCAGAAGCAGCAGCAGTAGCAGCAGGAGCCCAGCCCCTGCTTCTCCTC
CTCTTCCTCCTGCCCCACATTCCTCCTCCTCCTACCCCTTCTCACCCACC
GAGTGGCGCCATTTCCCCCTCCTTTCCTCTACCCCCCACACCCACGACAC
CAAGATCCTCCGCTTTGCCCTCCCCACCCCCGACACCTTGCCTAACCTCC
CCGTCACCTCCTGCGTTCTCCTCACCCTCGACCCCTCCCCTCCTTCCTCC
TCGTCCTCCGCTCCCTCCGCCCTGCTCGCCCGTCCTTACACCCCCATTTC
CCCTCCCACCACCCCTGGCTCTCTCTCCTTCCTCATCAAAGCCTACCCGC
ACGGCGCCCTCTCTCCCTCTCTTCACGCCCTTGTACCCAATAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTGGTGTGTGGATAAAGGGACCATT
CCCCAAATTCCCTTATTCCAAGAACCAATTTAAGTCCATATTAATGCTTG
CAGGAGGGACAGGGATCACCCCTATGGTCCAATGCCTGCATGCTCTTCTC
TCTGACTCAGGTACGTCACTCTCCCTCCCTCTGTCCCTCTTTCCGTCCCT
CCCTCCGTTTTCCCCTCCTTTCCATGTATCAGCCATCGGCTGAAGAAGAC
CTTTCCCTCCCTCCCTCCCTCCCTCCCGTCATGCGCCTCCGGGGCCGGAT
AGACGAAGAAGCGATTCGGAAGGTGGGGGGAGAGAGGGAGGGAGGGAGGG
AGGAAGGATTCGG
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protein sequence of jgi.p|Nanoce1779_2|600840

>mRNA_7998-protein ID=mRNA_7998-protein|Name=jgi.p|Nanoce1779_2|600840|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MSFLHASPSSTSAATAAAVAATGGARAARSRLRQLAASLQSSSYITESPR
GSTTNCSPTRSSSSSSRSPAPASPPLPPAPHSSSSYPFSPTEWRHFPLLS
STPHTHDTKILRFALPTPDTLPNLPVTSCVLLTLDPSPPSSSSSAPSALL
ARPYTPISPPTTPGSLSFLIKAYPHGALSPSLHALVPNNSSSSSSSSSSS
GVWIKGPFPKFPYSKNQFKSILMLAGGTGITPMVQCLHALLSDSGTSLSL
PLSLFPSLPPFSPPFHVSAIG*
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mRNA from alignment at scaffold_22:377901..379086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7998 ID=mRNA_7998|Name=jgi.p|Nanoce1779_2|600840|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at scaffold_22:377901..379086- (Nannochloropsis oceanica)
CAGGCTTTCCGGGGGTACGTGGCTGTCCAGAGAAAGTTCAAGCACGCCAC
TCGGGGACAATCAGAGCATCAGCGACCATGTCCTTCCTCCATGCGTCACC
CAGCAGTACTTCCGCGGCAACAGCTGCTGCTGTGGCCGCGACAGGGGGTG
CTCGAGCAGCACGGTCTCGTCTCCGCCAGCTGGCGGCATCTCTTCAATCG
TCCTCGTACATCACTGAGTCGCCACGAGGAAGCACCACGAACTGCAGTCC
CACCAGAAGCAGCAGCAGTAGCAGCAGGAGCCCAGCCCCTGCTTCTCCTC
CTCTTCCTCCTGCCCCACATTCCTCCTCCTCCTACCCCTTCTCACCCACC
GAGTGGCGCCATTTCCCCCTCCTTTCCTCTACCCCCCACACCCACGACAC
CAAGATCCTCCGCTTTGCCCTCCCCACCCCCGACACCTTGCCTAACCTCC
CCGTCACCTCCTGCGTTCTCCTCACCCTCGACCCCTCCCCTCCTTCCTCC
TCGTCCTCCGCTCCCTCCGCCCTGCTCGCCCGTCCTTACACCCCCATTTC
CCCTCCCACCACCCCTGGCTCTCTCTCCTTCCTCATCAAAGCCTACCCGC
ACGGCGCCCTCTCTCCCTCTCTTCACGCCCTTGTACCCAATAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTGGTGTGTGGATAAAGGGACCATT
CCCCAAATTCCCTTATTCCAAGAACCAATTTAAGTCCATATTAATGCTTG
CAGGAGGGACAGGGATCACCCCTATGGTCCAATGCCTGCATGCTCTTCTC
TCTGACTCAGGTACGTCACTCTCCCTCCCTCTGTCCCTCTTTCCGTCCCT
CCCTCCGTTTTCCCCTCCTTTCCATGTATCAGCCATCGGCTGAAGAAGAC
CTTTCCCTCCCTCCCTCCCTCCCCCCCCTCCCTCCCTAGAGGACCACACC
CGCGTGACGCTCCTCTTCGGCAGCCGCAGCGAGGATGACGTCCTTCTCAG
GGACTGGCTGCAGGGACAGGCCCTCCTCCACCCCCACCGACTCCAGATCC
ATCACTACCTCGAAGACGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
GTCATGCGCCTCCGGGGCCGGATAGACGAAGAAGCGATTCGGAAGGTGGG
GGGAGAGAGGGAGGGAGGGAGGGAGGAAGGATTCGG
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Coding sequence (CDS) from alignment at scaffold_22:377901..379086-

>mRNA_7998 ID=mRNA_7998|Name=jgi.p|Nanoce1779_2|600840|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_22:377901..379086- (Nannochloropsis oceanica)
ATGTCCTTCCTCCATGCGTCACCCAGCAGTACTTCCGCGGCAACAGCTGC
TGCTGTGGCCGCGACAGGGGGTGCTCGAGCAGCACGGTCTCGTCTCCGCC
AGCTGGCGGCATCTCTTCAATCGTCCTCGTACATCACTGAGTCGCCACGA
GGAAGCACCACGAACTGCAGTCCCACCAGAAGCAGCAGCAGTAGCAGCAG
GAGCCCAGCCCCTGCTTCTCCTCCTCTTCCTCCTGCCCCACATTCCTCCT
CCTCCTACCCCTTCTCACCCACCGAGTGGCGCCATTTCCCCCTCCTTTCC
TCTACCCCCCACACCCACGACACCAAGATCCTCCGCTTTGCCCTCCCCAC
CCCCGACACCTTGCCTAACCTCCCCGTCACCTCCTGCGTTCTCCTCACCC
TCGACCCCTCCCCTCCTTCCTCCTCGTCCTCCGCTCCCTCCGCCCTGCTC
GCCCGTCCTTACACCCCCATTTCCCCTCCCACCACCCCTGGCTCTCTCTC
CTTCCTCATCAAAGCCTACCCGCACGGCGCCCTCTCTCCCTCTCTTCACG
CCCTTGTACCCAATAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
GGTGTGTGGATAAAGGGACCATTCCCCAAATTCCCTTATTCCAAGAACCA
ATTTAAGTCCATATTAATGCTTGCAGGAGGGACAGGGATCACCCCTATGG
TCCAATGCCTGCATGCTCTTCTCTCTGACTCAGGTACGTCACTCTCCCTC
CCTCTGTCCCTCTTTCCGTCCCTCCCTCCGTTTTCCCCTCCTTTCCATGT
ATCAGCCATCGGCTGA
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Synonyms
Publications