jgi.p|Nanoce1779_2|181059, mRNA_7996 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|181059
Unique Name	mRNA_7996
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	929
Alignment location	scaffold_22:369983..371781 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	181145
Track	FilteredModels2
ProteinId	181059

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:369983..371781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|181059	gene_7996	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|181059	mRNA_7996-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7996	CDS_7996	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:369983..371781+
coding sequence from alignment at scaffold_22:369983..371781+

mRNA sequence

>mRNA_7996 ID=mRNA_7996|Name=jgi.p|Nanoce1779_2|181059|organism=Nannochloropsis oceanica|type=mRNA|length=929bp
GAGTGAAGGATAGAGGGACAGAGAGGAGATTGTGCAGTCGTTGAAAATGG
AATGATGAGGGAAAGCGAAGTGCTATCTCAACCTCCTACCCCTCTCTTCC
TCTCCCGCTCCCTCCCTCCCTCTTTCCTTCTTCTCCCACACTTTCCCTCC
TTCCCTCATTCCCTCCCTCCCTTGCTCTCTCCCTCCCTCCCTCCCTCCTG
GGAAAACACCAGCCGCCGCAGTCGCAGTCCTCCGAACGACATTCCCCCTC
CTCTTCCCCCCACATCCCACGCCGGCTCTTCCTCCTCCTCCCGTGATACC
AAGCTGACAGAGAAGGAGCGGAAAGAAGATGCTGCCAAACGCGCCAAGCT
CGATGCAGAATATGCGCGGCGGAAGAGAATGGAAGTGCTGCGACAGATCC
AGGGTGACTCGTACCAGGACGAGGAGGAGGAAGGAAGGGAGGAAGCGGCC
GAGTACCAGGCACTGTTTGAACGGCGGAGGGAGGGGCTGGAGGAGGAGGG
GGAGGAGGAGATGGACGAAGATGACGAGGCAAAGATGATGCAAACCCTTC
TCGGCTTCTCCCATTTCGACACCACCCATGAGAAGCCGGTGGAGGATAAC
CAGAAGGGTGCCGCCAAGGGGGCCGTGGCCAAGAGCGGGAGACGCACCTA
CCGGCAATACATGAATCGACGAGGGGGCTTCAACCGGGCACTGGACAAGG
TAAAGCAAACGTGAGGAAGGGAGAGAGGGAAGGGAGGCTGGGAGGGCGAG
AGAAAGGGTGGAGAAGGGCATTATTTTTTGTATACAAGAAAAGGGAAAGA
GTGAGCGAGGAAAGAGGATGGGAAGGGATTACAAGAGGAAACAAAAGCAC
CACAAACGAAGAGAAGAAAAAGAAAAAAGAGAGAAGAGAAAGAAAAAGGA
ATGAAGAACAAAAACAACATGTAAGCCTT

protein sequence of jgi.p|Nanoce1779_2|181059

>mRNA_7996-protein ID=mRNA_7996-protein|Name=jgi.p|Nanoce1779_2|181059|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MMRESEVLSQPPTPLFLSRSLPPSFLLLPHFPSFPHSLPPLLSPSLPPSW
ENTSRRSRSPPNDIPPPLPPTSHAGSSSSSRDTKLTEKERKEDAAKRAKL
DAEYARRKRMEVLRQIQGDSYQDEEEEGREEAAEYQALFERRREGLEEEG
EEEMDEDDEAKMMQTLLGFSHFDTTHEKPVEDNQKGAAKGAVAKSGRRTY
RQYMNRRGGFNRALDKVKQT*

mRNA from alignment at scaffold_22:369983..371781+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7996 ID=mRNA_7996|Name=jgi.p|Nanoce1779_2|181059|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at scaffold_22:369983..371781+ (Nannochloropsis oceanica)
GAGTGAAGGATAGAGGGACAGAGAGGAGATTGTGCAGTCGTTGAAAATGG
AATGATGAGGGAAAGCGAAGTGCTATCTCAACCTCCTACCCCTCTCTTCC
TCTCCCGCTCCCTCCCTCCCTCTTTCCTTCTTCTCCCACACTTTCCCTCC
TTCCCTCATTCCCTCCCTCCCTTGCTCTCTCCCTCCCTCCCTCCCTCCTG
GGAAAACACCAGCCGCCGCAGTCGCAGTCCTCCGAACGACATTCCCCCTC
CTCTTCCCCCCACATCCCACGCCGGCTCTTCCTCCTCCTCCCGTGATACC
AAGCTGACAGAGAAGGAGCGGAAGTACGTTGTCGTGGGGAAAAGGGAGGG
AGGGAAGGGAGGAAGGAAAACATGGACAGCATGACCTAGAGGCGGAAGTG
GCAGCTGTGAAGCTTGCTCAATCTCAAATCCCCTTCCCTCCCTCCCTCCT
TTCCTCTCTTCCTCCCTCCCTCTCACACACACAGAGAAGATGCTGCCAAA
CGCGCCAAGCTCGATGCAGAATATGCGCGGCGGAAGAGGTGAGAGAGGGA
GGGAGGGAGGGGGAGTGGGACTGAGAGAACGTCATCAGAAGGAGACACTA
ACGTGAGGAGGAGAGAGGGTGAGTGGGACAGGAAGCAGGCAGCAGCAGAG
TAGCGGTAGGAGGAGAAAGAAGGAGGATGAGAAGGCGGAGGAGGAAGAGG
AAGAAGAAGAGGAAGAGGAACGGGGCTTTATCACCATACACTTCCTCAAT
CCACACCACCCTCCCTCCCTCCCTCCTTCACTCACTCAGAATGGAAGTGC
TGCGACAGATCCAGGGTGACTCGTACCAGGACGAGGAGGAGGAAGGAAGG
GAGGAAGCGGCCGAGTACCAGGCACTGTTTGAACGGCGGAGGGAGGGGCT
GGAGGAGGAGGGGGAGGAGGAGATGGACGAAGATGACGAGGTAAGGAGGG
AGGGAGGATCGTGACTAATCGATTTCATGTGTCGATAGCACTATTCACTA
AAGGTACCATTTGTTTAGTTTATTTCATCCTTTACTAGTCCCATAATTTC
CCGAGCCCATGATTTATTGATTTCAAAGTTTCCTCCTCTCACTGTCTATC
AATCGCACAGGCAAAGATGATGCAAACCCTTCTCGGCTTCTCCCATTTCG
ACACCACCCATGTACGACCCTCCCTCCCTCCCTCCCTCCCGCCTACCGTC
CTTCCTTCCTTGGAAAGACTCACCTGCCCTCCCTCCCTCCCTCCTTCCCT
CCCTCCCCCTTTCTCACAGGAGAAGCCGGTGGAGGATAACCAGAAGGGTG
CCGCCAAGGGGGCCGTGGCCAAGAGCGGGAGACGCACCTACCGGCAATAC
ATGAATCGACGAGGTGATGAGGAGGGAGGGAGGGAGGGAGAGAGGGAGAG
AAATGGAGGGAGGGAAGGAAGGAAGAAATGGGAGGGGGCAAGAAATCGGC
CAAACGAAAGGATTTATTCGCCCATATCCTTGTCCTTCCTTTACACTGAT
ATCCCTCCCTCCCTCTCTTCCTCCCTCTTTTTCTTCCACACAGGGGGCTT
CAACCGGGCACTGGACAAGGTAAAGCAAACGTGAGGAAGGGAGAGAGGGA
AGGGAGGCTGGGAGGGCGAGAGAAAGGGTGGAGAAGGGCATTATTTTTTG
TATACAAGAAAAGGGAAAGAGTGAGCGAGGAAAGAGGATGGGAAGGGATT
ACAAGAGGAAACAAAAGCACCACAAACGAAGAGAAGAAAAAGAAAAAAGA
GAGAAGAGAAAGAAAAAGGAATGAAGAACAAAAACAACATGTAAGCCTT

Coding sequence (CDS) from alignment at scaffold_22:369983..371781+

>mRNA_7996 ID=mRNA_7996|Name=jgi.p|Nanoce1779_2|181059|organism=Nannochloropsis oceanica|type=CDS|length=3978bp|location=Sequence derived from alignment at scaffold_22:369983..371781+ (Nannochloropsis oceanica)
ATGATGAGGGAAAGCGAAGTGCTATCTCAACCTCCTACCCCTCTCTTCCT
CTCCCGCTCCCTCCCTCCCTCTTTCCTTCTTCTCCCACACTTTCCCTCCT
TCCCTCATTCCCTCCCTCCCTTGCTCTCTCCCTCCCTCCCTCCCTCCTGG
GAAAACACCAGCCGCCGCAGTCGCAGTCCTCCGAACGACATTCCCCCTCC
TCTTCCCCCCACATCCCACGCCGGCTCTTCCTCCTCCTCCCGTGATACCA
AGCTGACAGAGAAGGAGCGGAAAGAAGATGCTGCCAAACGCGCCAAGCTC
GATGCAGAATATGCGCGGCGGAAGAGAATGGAAGTGCTGCGACAGATCCA
GGGTGACTCGTACCAGGACGAGGAGGAGGAAGGAAGGGAGGAAGCGGCCG
AGTACCAGGCACTGTTTGAACGGCGGAGGGAGGGGCTGGAGGAGGAGGGG
GAGGAGGAGATGGACGAAGATGACGAGGCAAAGATGATGCAAACCCTTCT
CGGCTTCTCCCATTTCGACACCACCCATGAGAAGCCGGTGGAGGATAACC
AGAAGGGTGCCGCCAAGGGGGCCGTGGCCAAGAGCGGGAGACGCACCTAC
CGGCAATACATGAATCGACGAGGGGGCTTCAACCGGGCACTGGACAAGGT
AAAGCAAACGTGAATGATGAGGGAAAGCGAAGTGCTATCTCAACCTCCTA
CCCCTCTCTTCCTCTCCCGCTCCCTCCCTCCCTCTTTCCTTCTTCTCCCA
CACTTTCCCTCCTTCCCTCATTCCCTCCCTCCCTTGCTCTCTCCCTCCCT
CCCTCCCTCCTGGGAAAACACCAGCCGCCGCAGTCGCAGTCCTCCGAACG
ACATTCCCCCTCCTCTTCCCCCCACATCCCACGCCGGCTCTTCCTCCTCC
TCCCGTGATACCAAGCTGACAGAGAAGGAGCGGAAAGAAGATGCTGCCAA
ACGCGCCAAGCTCGATGCAGAATATGCGCGGCGGAAGAGAATGGAAGTGC
TGCGACAGATCCAGGGTGACTCGTACCAGGACGAGGAGGAGGAAGGAAGG
GAGGAAGCGGCCGAGTACCAGGCACTGTTTGAACGGCGGAGGGAGGGGCT
GGAGGAGGAGGGGGAGGAGGAGATGGACGAAGATGACGAGGCAAAGATGA
TGCAAACCCTTCTCGGCTTCTCCCATTTCGACACCACCCATGAGAAGCCG
GTGGAGGATAACCAGAAGGGTGCCGCCAAGGGGGCCGTGGCCAAGAGCGG
GAGACGCACCTACCGGCAATACATGAATCGACGAGGGGGCTTCAACCGGG
CACTGGACAAGGTAAAGCAAACGTGAATGATGAGGGAAAGCGAAGTGCTA
TCTCAACCTCCTACCCCTCTCTTCCTCTCCCGCTCCCTCCCTCCCTCTTT
CCTTCTTCTCCCACACTTTCCCTCCTTCCCTCATTCCCTCCCTCCCTTGC
TCTCTCCCTCCCTCCCTCCCTCCTGGGAAAACACCAGCCGCCGCAGTCGC
AGTCCTCCGAACGACATTCCCCCTCCTCTTCCCCCCACATCCCACGCCGG
CTCTTCCTCCTCCTCCCGTGATACCAAGCTGACAGAGAAGGAGCGGAAAG
AAGATGCTGCCAAACGCGCCAAGCTCGATGCAGAATATGCGCGGCGGAAG
AGAATGGAAGTGCTGCGACAGATCCAGGGTGACTCGTACCAGGACGAGGA
GGAGGAAGGAAGGGAGGAAGCGGCCGAGTACCAGGCACTGTTTGAACGGC
GGAGGGAGGGGCTGGAGGAGGAGGGGGAGGAGGAGATGGACGAAGATGAC
GAGGCAAAGATGATGCAAACCCTTCTCGGCTTCTCCCATTTCGACACCAC
CCATGAGAAGCCGGTGGAGGATAACCAGAAGGGTGCCGCCAAGGGGGCCG
TGGCCAAGAGCGGGAGACGCACCTACCGGCAATACATGAATCGACGAGGG
GGCTTCAACCGGGCACTGGACAAGGTAAAGCAAACGTGAATGATGAGGGA
AAGCGAAGTGCTATCTCAACCTCCTACCCCTCTCTTCCTCTCCCGCTCCC
TCCCTCCCTCTTTCCTTCTTCTCCCACACTTTCCCTCCTTCCCTCATTCC
CTCCCTCCCTTGCTCTCTCCCTCCCTCCCTCCCTCCTGGGAAAACACCAG
CCGCCGCAGTCGCAGTCCTCCGAACGACATTCCCCCTCCTCTTCCCCCCA
CATCCCACGCCGGCTCTTCCTCCTCCTCCCGTGATACCAAGCTGACAGAG
AAGGAGCGGAAAGAAGATGCTGCCAAACGCGCCAAGCTCGATGCAGAATA
TGCGCGGCGGAAGAGAATGGAAGTGCTGCGACAGATCCAGGGTGACTCGT
ACCAGGACGAGGAGGAGGAAGGAAGGGAGGAAGCGGCCGAGTACCAGGCA
CTGTTTGAACGGCGGAGGGAGGGGCTGGAGGAGGAGGGGGAGGAGGAGAT
GGACGAAGATGACGAGGCAAAGATGATGCAAACCCTTCTCGGCTTCTCCC
ATTTCGACACCACCCATGAGAAGCCGGTGGAGGATAACCAGAAGGGTGCC
GCCAAGGGGGCCGTGGCCAAGAGCGGGAGACGCACCTACCGGCAATACAT
GAATCGACGAGGGGGCTTCAACCGGGCACTGGACAAGGTAAAGCAAACGT
GAATGATGAGGGAAAGCGAAGTGCTATCTCAACCTCCTACCCCTCTCTTC
CTCTCCCGCTCCCTCCCTCCCTCTTTCCTTCTTCTCCCACACTTTCCCTC
CTTCCCTCATTCCCTCCCTCCCTTGCTCTCTCCCTCCCTCCCTCCCTCCT
GGGAAAACACCAGCCGCCGCAGTCGCAGTCCTCCGAACGACATTCCCCCT
CCTCTTCCCCCCACATCCCACGCCGGCTCTTCCTCCTCCTCCCGTGATAC
CAAGCTGACAGAGAAGGAGCGGAAAGAAGATGCTGCCAAACGCGCCAAGC
TCGATGCAGAATATGCGCGGCGGAAGAGAATGGAAGTGCTGCGACAGATC
CAGGGTGACTCGTACCAGGACGAGGAGGAGGAAGGAAGGGAGGAAGCGGC
CGAGTACCAGGCACTGTTTGAACGGCGGAGGGAGGGGCTGGAGGAGGAGG
GGGAGGAGGAGATGGACGAAGATGACGAGGCAAAGATGATGCAAACCCTT
CTCGGCTTCTCCCATTTCGACACCACCCATGAGAAGCCGGTGGAGGATAA
CCAGAAGGGTGCCGCCAAGGGGGCCGTGGCCAAGAGCGGGAGACGCACCT
ACCGGCAATACATGAATCGACGAGGGGGCTTCAACCGGGCACTGGACAAG
GTAAAGCAAACGTGAATGATGAGGGAAAGCGAAGTGCTATCTCAACCTCC
TACCCCTCTCTTCCTCTCCCGCTCCCTCCCTCCCTCTTTCCTTCTTCTCC
CACACTTTCCCTCCTTCCCTCATTCCCTCCCTCCCTTGCTCTCTCCCTCC
CTCCCTCCCTCCTGGGAAAACACCAGCCGCCGCAGTCGCAGTCCTCCGAA
CGACATTCCCCCTCCTCTTCCCCCCACATCCCACGCCGGCTCTTCCTCCT
CCTCCCGTGATACCAAGCTGACAGAGAAGGAGCGGAAAGAAGATGCTGCC
AAACGCGCCAAGCTCGATGCAGAATATGCGCGGCGGAAGAGAATGGAAGT
GCTGCGACAGATCCAGGGTGACTCGTACCAGGACGAGGAGGAGGAAGGAA
GGGAGGAAGCGGCCGAGTACCAGGCACTGTTTGAACGGCGGAGGGAGGGG
CTGGAGGAGGAGGGGGAGGAGGAGATGGACGAAGATGACGAGGCAAAGAT
GATGCAAACCCTTCTCGGCTTCTCCCATTTCGACACCACCCATGAGAAGC
CGGTGGAGGATAACCAGAAGGGTGCCGCCAAGGGGGCCGTGGCCAAGAGC
GGGAGACGCACCTACCGGCAATACATGAATCGACGAGGGGGCTTCAACCG
GGCACTGGACAAGGTAAAGCAAACGTGA

Synonyms

Publications