jgi.p|Nanoce1779_2|654985, mRNA_7993 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|654985
Unique NamemRNA_7993
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length411
Alignment locationscaffold_22:357333..357743 +

Link to JBrowse

Properties
Property NameValue
TranscriptId655071
TrackFilteredModels2
ProteinId654985
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:357333..357743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|654985gene_7993Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|654985mRNA_7993-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7993CDS_7993Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7993 ID=mRNA_7993|Name=jgi.p|Nanoce1779_2|654985|organism=Nannochloropsis oceanica|type=mRNA|length=411bp
ATGATTTTAACCCCCACGCGTACTAGTCAGGCGGTATACGATATTTGTCG
TCAGAAATTTTGCCGTGTCATATGTGATGAAATCTCTGTCGTCCAAAAAG
GTCTGAAGGATTTGGTGACGGAACAAGTCGTCGCCAAAGAATGTCCCCCG
CCTCCGCCGTCGTCCCTTTCTCGATCCAAGACTGCGTTGAAGATTGTTGA
ATCTCCGGCTGCGGTAATGCAGAATGCTCCGCCCAACCTAACCTTCTCGA
TGGTGTCCGGTATTCTATCTACGGGGGCTCTAGGGGCGATGGGACCTGCT
GGCTCAGCTGGCCCTGCAGGGGCTACTGGGGCCATGGGACCTGCTGGGCC
TACGGGAGCCACGGGGGCGATGGAAGGGCTCCCTCTGCGGGTGCGTATGC
AAATAAAATAG
back to top

protein sequence of jgi.p|Nanoce1779_2|654985

>mRNA_7993-protein ID=mRNA_7993-protein|Name=jgi.p|Nanoce1779_2|654985|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MILTPTRTSQAVYDICRQKFCRVICDEISVVQKGLKDLVTEQVVAKECPP
PPPSSLSRSKTALKIVESPAAVMQNAPPNLTFSMVSGILSTGALGAMGPA
GSAGPAGATGAMGPAGPTGATGAMEGLPLRVRMQIK*
back to top

mRNA from alignment at scaffold_22:357333..357743+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7993 ID=mRNA_7993|Name=jgi.p|Nanoce1779_2|654985|organism=Nannochloropsis oceanica|type=mRNA|length=411bp|location=Sequence derived from alignment at scaffold_22:357333..357743+ (Nannochloropsis oceanica)
ATGATTTTAACCCCCACGCGTACTAGTCAGGCGGTATACGATATTTGTCG
TCAGAAATTTTGCCGTGTCATATGTGATGAAATCTCTGTCGTCCAAAAAG
GTCTGAAGGATTTGGTGACGGAACAAGTCGTCGCCAAAGAATGTCCCCCG
CCTCCGCCGTCGTCCCTTTCTCGATCCAAGACTGCGTTGAAGATTGTTGA
ATCTCCGGCTGCGGTAATGCAGAATGCTCCGCCCAACCTAACCTTCTCGA
TGGTGTCCGGTATTCTATCTACGGGGGCTCTAGGGGCGATGGGACCTGCT
GGCTCAGCTGGCCCTGCAGGGGCTACTGGGGCCATGGGACCTGCTGGGCC
TACGGGAGCCACGGGGGCGATGGAAGGGCTCCCTCTGCGGGTGCGTATGC
AAATAAAATAG
back to top

Coding sequence (CDS) from alignment at scaffold_22:357333..357743+

>mRNA_7993 ID=mRNA_7993|Name=jgi.p|Nanoce1779_2|654985|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_22:357333..357743+ (Nannochloropsis oceanica)
ATGATTTTAACCCCCACGCGTACTAGTCAGGCGGTATACGATATTTGTCG
TCAGAAATTTTGCCGTGTCATATGTGATGAAATCTCTGTCGTCCAAAAAG
GTCTGAAGGATTTGGTGACGGAACAAGTCGTCGCCAAAGAATGTCCCCCG
CCTCCGCCGTCGTCCCTTTCTCGATCCAAGACTGCGTTGAAGATTGTTGA
ATCTCCGGCTGCGGTAATGCAGAATGCTCCGCCCAACCTAACCTTCTCGA
TGGTGTCCGGTATTCTATCTACGGGGGCTCTAGGGGCGATGGGACCTGCT
GGCTCAGCTGGCCCTGCAGGGGCTACTGGGGCCATGGGACCTGCTGGGCC
TACGGGAGCCACGGGGGCGATGGAAGGGCTCCCTCTGCGGGTGCGTATGC
AAATAAAATAG
back to top
Synonyms
Publications