jgi.p|Nanoce1779_2|600813, mRNA_7992 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600813
Unique NamemRNA_7992
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length515
Alignment locationscaffold_22:354242..355216 +

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Properties
Property NameValue
TranscriptId600899
TrackFilteredModels2
ProteinId600813
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:354242..355216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600813gene_7992Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600813mRNA_7992-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7992CDS_7992Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7992 ID=mRNA_7992|Name=jgi.p|Nanoce1779_2|600813|organism=Nannochloropsis oceanica|type=mRNA|length=515bp
AAGCACAGTTCCATTAACGATGAGGATATCATGGCTTCCGGTTGCCACCG
CCACCACCCCTGCTGCTGCTGCTGCTCCTCCTCCCCTCCCTTTCTCTGCC
CTGGGGGTCGGTGCTGATGGTGCTGCACTTGGCACTCCTCCACTCCCCAT
GATCCGTCCTCCCTCCCTTCATACAGACCACCTTCTGCGTTCCCCTCCGC
GCCGTTCCTGCCCTCCACCTTGGCGCGTCGCCTCATCTTCTTTCCGAGCT
CCCGAGGCTTGCAGGGGAGGGCCAAGCGCCAACATCGGCTGCAGGGAAAT
TCTCTATTGCATTTCATCTTAAGCCCGTGACACGCCTCACAGACCATAGA
GAGGGAGCCATCTCCATCCACTTCATCCCCGGTTGTTCGTGCCGCTGAAC
CATGGCTATGGAAGTCAGGCATTCGAACCGGCCGGCGAGAGGATCTACGA
AGCGGGAACTCCCTCATTTTGGCCTTTTCCTTTCTTTGATCAAGCCTGTG
AGCGAGAGAGGCCCT
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protein sequence of jgi.p|Nanoce1779_2|600813

>mRNA_7992-protein ID=mRNA_7992-protein|Name=jgi.p|Nanoce1779_2|600813|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MRISWLPVATATTPAAAAAPPPLPFSALGVGADGAALGTPPLPMIRPPSL
HTDHLLRSPPRRSCPPPWRVASSSFRAPEACRGGPSANIGCREILYCISS
*
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mRNA from alignment at scaffold_22:354242..355216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7992 ID=mRNA_7992|Name=jgi.p|Nanoce1779_2|600813|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at scaffold_22:354242..355216+ (Nannochloropsis oceanica)
AAGCACAGTTCCATTAACGATGAGGATATCATGGCTTCCGGTTGCCACCG
CCACCACCCCTGCTGCTGCTGCTGCTCCTCCTCCCCTCCCTTTCTCTGCC
CTGGGGGTCGGTGCTGATGGTGCTGCACTTGGCACTCCTCCACTCCCCAT
GATCCGTCCTCCCTCCCTTCATACAGACCACCTTCTGCGTTCCCCTCCGC
GCCGTTCCTGCCCTCCACCTTGGCGCGTCGCCTCATCTTCTTTCCGAGCT
CCCGAGGCTTGCAGGGGAGGGCCAAGCGCCAACATCTGTTTGTTTGGTTT
TCGAGAAAGTGTTTATTTGTGTGGGTGGATACAAGGAGCATGAGGGGGTG
CGGTCGGTGTATGCGCGGAAGCGGTGGAAGTAGAGGACACTCTTCCTCAC
AAACCTCCTCGGGATCCTCCAGCTGGCCACCACCAATACAACATAGCGCG
AATCCTCACGTTGTTGGCCTTGAAAGAGCCCCCTTGAACATGCTGAGTCC
GTATTCGCTCAAGCATACTTTCCTTTTTCCCTTTCTCCCGTACTACCACC
CTCCCTAGCACTTACCGGCTGCAGGGAAATTCTCTATTGCTGTGTTGGTG
GTAGGAAGGGGAGAAAGGAAGGGAGGGGAGAAGAGAAAGAAGGGGGGGTT
AAGTGGGAGGGAGGATGGGGGCTAAGAGATTGCCAGTAAATTGATTGTAT
TTCTCTTTCTTCTTCGTACGGGCAGCTACAGGAGAGGACAAGATAGTCTA
CCGAATTCAATAAACGTACCATTTCATCTTAAGCCCGTGACACGCCTCAC
AGACCATAGAGAGGGAGCCATCTCCATCCACTTCATCCCCGGTTGTTCGT
GCCGCTGAACCATGGCTATGGAAGTCAGGCATTCGAACCGGCCGGCGAGA
GGATCTACGAAGCGGGAACTCCCTCATTTTGGCCTTTTCCTTTCTTTGAT
CAAGCCTGTGAGCGAGAGAGGCCCT
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Coding sequence (CDS) from alignment at scaffold_22:354242..355216+

>mRNA_7992 ID=mRNA_7992|Name=jgi.p|Nanoce1779_2|600813|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_22:354242..355216+ (Nannochloropsis oceanica)
ATGAGGATATCATGGCTTCCGGTTGCCACCGCCACCACCCCTGCTGCTGC
TGCTGCTCCTCCTCCCCTCCCTTTCTCTGCCCTGGGGGTCGGTGCTGATG
GTGCTGCACTTGGCACTCCTCCACTCCCCATGATCCGTCCTCCCTCCCTT
CATACAGACCACCTTCTGCGTTCCCCTCCGCGCCGTTCCTGCCCTCCACC
TTGGCGCGTCGCCTCATCTTCTTTCCGAGCTCCCGAGGCTTGCAGGGGAG
GGCCAAGCGCCAACATCGGCTGCAGGGAAATTCTCTATTGCATTTCATCT
TAAATGAGGATATCATGGCTTCCGGTTGCCACCGCCACCACCCCTGCTGC
TGCTGCTGCTCCTCCTCCCCTCCCTTTCTCTGCCCTGGGGGTCGGTGCTG
ATGGTGCTGCACTTGGCACTCCTCCACTCCCCATGATCCGTCCTCCCTCC
CTTCATACAGACCACCTTCTGCGTTCCCCTCCGCGCCGTTCCTGCCCTCC
ACCTTGGCGCGTCGCCTCATCTTCTTTCCGAGCTCCCGAGGCTTGCAGGG
GAGGGCCAAGCGCCAACATCGGCTGCAGGGAAATTCTCTATTGCATTTCA
TCTTAAATGAGGATATCATGGCTTCCGGTTGCCACCGCCACCACCCCTGC
TGCTGCTGCTGCTCCTCCTCCCCTCCCTTTCTCTGCCCTGGGGGTCGGTG
CTGATGGTGCTGCACTTGGCACTCCTCCACTCCCCATGATCCGTCCTCCC
TCCCTTCATACAGACCACCTTCTGCGTTCCCCTCCGCGCCGTTCCTGCCC
TCCACCTTGGCGCGTCGCCTCATCTTCTTTCCGAGCTCCCGAGGCTTGCA
GGGGAGGGCCAAGCGCCAACATCGGCTGCAGGGAAATTCTCTATTGCATT
TCATCTTAA
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Synonyms
Publications