|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 600890 |
| Track | FilteredModels2 |
| ProteinId | 600804 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:350298..352387 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7991 ID=mRNA_7991|Name=jgi.p|Nanoce1779_2|600804|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
CTGTCTGCTTAATTCCCTTCGTTTCAATCTCCGCACGTTCCGAGCCGCCG
AATTGCCACCCTTTTATGTGTCCGACGCCCTTGTCGTTCCCTCGCACTCT
CTTTCAGGCTTTCAAGAAAGACGGCGGCATAGACCTCTACCTCATGCAGA
CCCGCCCGCACGAGTGGCCGGATGGTCGCCTGGGAATCCTTCTCAAGCTC
GAAGAGGTCCCGCCTTCGAGGCACATTTCCTGCCGCCCCAACTACCAGAA
GGTGGCTCAGGCATTCCGTCGGCGCCCTTCCCAGCAAGGAGCAGGGGGCG
GGAAGACGGGCGGTGGCGGGATCAAGACAACAAAAAAGAGTGCGTCACCT
TCCGCCGGCGTGTCAACATCTCTCTCGCCCTCACTCCCGTCCCTTGGCCT
TCCTACCCTATTTCATACCGTTCTTCCTGGCCTGGCCTCGTTTCCTCTCC
CTCCCCTCCCCAAGCCCCCGCCCACCTCGGGAGTCTCTTTCCCACCTATC
TGCTTCTCCCGAGCCTCAACCCACGTGGCCGCAAGCATCTTCTTCAAATC
AGCAGAGGCGAAGGAGGGGCAAGAGACAGGGATGGACGGGAGGACGACGA
GGGGGCGTCTCGACGAGGAGGAAAAAGAAGCAGAGGACGATTGGGGGAAA
ATGGAAGAGGACCCATACAGCAAACAGCACCCACTGCGGCACCCGAATCA
TCATCATCACCAGCGGCCACTTTATTACGATCAGCAGCAAGAGAAGGTGG
AGCAAGAGCAGCAACAGCAACAGCAGGGCCGAGAAACAGAGCAAGGCGAA
GGACAAGTCGAAGGAGAAGGTCGCGATTTCTTGGTCGGTCCAACAGGGCA
AGCGGAAGAGAAAAGACAGCGCGCGTGTGTCGAAGAAGCATCAGCAGTCG
GCGGTGTCGATGGCCAACACAGTGCGGGTGCTAGTGGTGGTAGCCTGCCT
TCTCAGACGGCTGGGGCCGGCCTGCCATTGCTCTCTTTCTCATCTGCCTC
ACCTGCAGCCTCTTCGTCATCAACCCTCTCTTTACCCGCTTCCTTTGCGG
CTTCTTCGACTACTCCTTTCTCCATCTCTTTTGGTCCGCTCTCTTCCTCC
TCCCCCTTCCCCATCTCGTTGTCCCGCCCTAATGCGCCCGCCCCCTCAGC
CCTCTCCTTGGAGGCATCAACAAGTATCACGACCTTACCGCCTCCTCTGC
TTCCGTCCCCTCATCCATCCCCTCTCTCGCGACCTCATGACGAACGCTGG
GTGGCAGGAAGGGAGGAGTGGCGGCTTGAGAGAGAAGAGGAGAAATTGAT
GAGAGAGCGCGTACAGGAAGGATGGGTGACAGGGCGGGAGGAGCAGGGAG
CGGGGGGGGAGGGGACGGCAGAGGAGAGGCTGTCTGCTCTACCGGCCTGT
GCACACATGTTGGTTCCGTGCTTAAGCGAGGATGTAATGCGCGGCGTCTT
TCAGTGAGGAGAGGGGAAGAAGGGGAAGAGGAAGAGGGGAAGGAAGGAAG
AAGTAATGGAAGAGGTAAAAGAAGAAGAGGAGGAGGCGGAGAAGGAGAAG
GAGGCGGAGGAGGCGGAGGATGAGGAAGGCGATGAGCATT back to topprotein sequence of jgi.p|Nanoce1779_2|600804 >mRNA_7991-protein ID=mRNA_7991-protein|Name=jgi.p|Nanoce1779_2|600804|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MCPTPLSFPRTLFQAFKKDGGIDLYLMQTRPHEWPDGRLGILLKLEEVPP
SRHISCRPNYQKVAQAFRRRPSQQGAGGGKTGGGGIKTTKKSASPSAGVS
TSLSPSLPSLGLPTLFHTVLPGLASFPLPPLPKPPPTSGVSFPPICFSRA
STHVAASIFFKSAEAKEGQETGMDGRTTRGRLDEEEKEAEDDWGKMEEDP
YSKQHPLRHPNHHHHQRPLYYDQQQEKVEQEQQQQQQGRETEQGEGQVEG
EGRDFLVGPTGQAEEKRQRACVEEASAVGGVDGQHSAGASGGSLPSQTAG
AGLPLLSFSSASPAASSSSTLSLPASFAASSTTPFSISFGPLSSSSPFPI
SLSRPNAPAPSALSLEASTSITTLPPPLLPSPHPSPLSRPHDERWVAGRE
EWRLEREEEKLMRERVQEGWVTGREEQGAGGEGTAEERLSALPACAHMLV
PCLSEDVMRGVFQ* back to topmRNA from alignment at scaffold_22:350298..352387- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7991 ID=mRNA_7991|Name=jgi.p|Nanoce1779_2|600804|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp|location=Sequence derived from alignment at scaffold_22:350298..352387- (Nannochloropsis oceanica)
CTGTCTGCTTAATTCCCTTCGTTTCAATCTCCGCACGTTCCGAGCCGCCG
AATTGCCACCCTTTTATGTGTCCGACGCCCTTGTCGTTCCCTCGCACTCT
CTTTCAGGCTTTCAAGAAAGACGGCGGCATAGACCTCTACCTCATGCAGA
CCCGCCCGCACGAGTGGCCGGATGGTCGCCTGGGAATCCTTCTCAAGCTC
GAAGGTAAGCATGTCAAGGTCAGCTGAGGGAGGCAGAGAGGGAGGGAAAG
AGACAGAGGAGGGCCCGTGGAATGTTGCCATCACAAGGATGAAAACCAAC
CCCCCGGCTGTCCGTATTTTCAAAGCGCCCGTCGTACCCTGCTTCCTGCT
TCCTTCCTCCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTGCCTGCCTG
CCTGTTACAGAGGTCCCGCCTTCGAGGCACATTTCCTGCCGCCCCAACTA
CCAGAAGGTGGCTCAGGCATTCCGTCGGCGCCCTTCCCAGCAAGGAGCAG
GGGGCGGGAAGACGGGCGGTGGCGGGATCAAGACAACAAAAAGTGAGTGA
GGGAGGGAAGTGTCTTTGTTTGGGCGTGGGTGTGAAGTGAGTTAGGTGCT
TACGGTGTGGGTGTGAGGGTGTAGCTGGCGTCTCGTTTCTGCTCGTGGTC
TCACTATTCTTCCCTCCCTCCCTCCTTCCCTCGCTCCTTACCCCTATCAA
CCAGAGAGTGCGTCACCTTCCGCCGGCGTGTCAACATCTCTCTCGCCCTC
ACTCCCGTCCCTTGGCCTTCCTACCCTATTTCATACCGTTCTTCCTGGCC
TGGCCTCGTTTCCTCTCCCTCCCCTCCCCAAGCCCCCGCCCACCTCGGGA
GTCTCTTTCCCACCTATCTGCTTCTCCCGAGCCTCAACCCACGTGGCCGC
AAGCATCTTCTTCAAATCAGCAGAGGCGAAGGAGGGGCAAGAGACAGGGA
TGGACGGGAGGACGACGAGGGGGCGTCTCGACGAGGAGGAAAAAGAAGCA
GAGGACGATTGGGGGAAAATGGAAGGTAAGGAAGAGAGGGACAGAAGCTC
GGAGGTATCAGGATCGCACAATCAGGATAACTCAATCTCTTCTTCGCGGT
GTTTGTCGCTGCCTGCAGAGGACCCATACAGCAAACAGCACCCACTGCGG
CACCCGAATCATCATCATCACCAGCGGCCACTTTATTACGATCAGCAGCA
AGAGAAGGTGGAGCAAGAGCAGCAACAGCAACAGCAGGGCCGAGAAACAG
AGCAAGGCGAAGGACAAGTCGAAGGAGAAGGTCGCGATTTCTTGGTCGGT
CCAACAGGGCAAGCGGAAGAGAAAAGACAGCGCGCGTGTGTCGAAGAAGC
ATCAGCAGTCGGCGGTGTCGATGGCCAACACAGTGCGGGTGCTAGTGGTG
GTAGCCTGCCTTCTCAGACGGCTGGGGCCGGCCTGCCATTGCTCTCTTTC
TCATCTGCCTCACCTGCAGCCTCTTCGTCATCAACCCTCTCTTTACCCGC
TTCCTTTGCGGCTTCTTCGACTACTCCTTTCTCCATCTCTTTTGGTCCGC
TCTCTTCCTCCTCCCCCTTCCCCATCTCGTTGTCCCGCCCTAATGCGCCC
GCCCCCTCAGCCCTCTCCTTGGAGGCATCAACAAGTATCACGACCTTACC
GCCTCCTCTGCTTCCGTCCCCTCATCCATCCCCTCTCTCGCGACCTCATG
ACGAACGCTGGGTGGCAGGAAGGGAGGAGTGGCGGCTTGAGAGAGAAGAG
GAGAAATTGATGAGAGAGCGCGTACAGGAAGGATGGGTGACAGGGCGGGA
GGAGCAGGGAGCGGGGGGGGAGGGGACGGCAGAGGAGAGGCTGTCTGCTC
TACCGGCCTGTGCACACATGTTGGTTCCGTGCTTAAGCGAGGATGTAATG
CGCGGCGTCTTTCAGTGAGGAGAGGGGAAGAAGGGGAAGAGGAAGAGGGG
AAGGAAGGAAGAAGTAATGGAAGAGGTAAAAGAAGAAGAGGAGGAGGCGG
AGAAGGAGAAGGAGGCGGAGGAGGCGGAGGTGGAGGAGGAGGAAGAGGAG
GAGGAGGAAGAGGAGGAGGATGAGGAAGGCGATGAGCATT back to topCoding sequence (CDS) from alignment at scaffold_22:350298..352387- >mRNA_7991 ID=mRNA_7991|Name=jgi.p|Nanoce1779_2|600804|organism=Nannochloropsis oceanica|type=CDS|length=5568bp|location=Sequence derived from alignment at scaffold_22:350298..352387- (Nannochloropsis oceanica)
AGGACCCATACAGCAAACAGCACCCACTGCGGCACCCGAATCATCATCAT
CACCAGCGGCCACTTTATTACGATCAGCAGCAAGAGAAGGTGGAGCAAGA
GCAGCAACAGCAACAGCAGGGCCGAGAAACAGAGCAAGGCGAAGGACAAG
TCGAAGGAGAAGGTCGCGATTTCTTGGTCGGTCCAACAGGGCAAGCGGAA
GAGAAAAGACAGCGCGCGTGTGTCGAAGAAGCATCAGCAGTCGGCGGTGT
CGATGGCCAACACAGTGCGGGTGCTAGTGGTGGTAGCCTGCCTTCTCAGA
CGGCTGGGGCCGGCCTGCCATTGCTCTCTTTCTCATCTGCCTCACCTGCA
GCCTCTTCGTCATCAACCCTCTCTTTACCCGCTTCCTTTGCGGCTTCTTC
GACTACTCCTTTCTCCATCTCTTTTGGTCCGCTCTCTTCCTCCTCCCCCT
TCCCCATCTCGTTGTCCCGCCCTAATGCGCCCGCCCCCTCAGCCCTCTCC
TTGGAGGCATCAACAAGTATCACGACCTTACCGCCTCCTCTGCTTCCGTC
CCCTCATCCATCCCCTCTCTCGCGACCTCATGACGAACGCTGGGTGGCAG
GAAGGGAGGAGTGGCGGCTTGAGAGAGAAGAGGAGAAATTGATGAGAGAG
CGCGTACAGGAAGGATGGGTGACAGGGCGGGAGGAGCAGGGAGCGGGGGG
GGAGGGGACGGCAGAGGAGAGGCTGTCTGCTCTACCGGCCTGTGCACACA
TGTTGGTTCCGTGCTTAAGCGAGGATGTAATGCGCGGCGTCTTTCAGTGA
AGAGTGCGTCACCTTCCGCCGGCGTGTCAACATCTCTCTCGCCCTCACTC
CCGTCCCTTGGCCTTCCTACCCTATTTCATACCGTTCTTCCTGGCCTGGC
CTCGTTTCCTCTCCCTCCCCTCCCCAAGCCCCCGCCCACCTCGGGAGTCT
CTTTCCCACCTATCTGCTTCTCCCGAGCCTCAACCCACGTGGCCGCAAGC
ATCTTCTTCAAATCAGCAGAGGCGAAGGAGGGGCAAGAGACAGGGATGGA
CGGGAGGACGACGAGGGGGCGTCTCGACGAGGAGGAAAAAGAAGCAGAGG
ACGATTGGGGGAAAATGGAAGAGGTCCCGCCTTCGAGGCACATTTCCTGC
CGCCCCAACTACCAGAAGGTGGCTCAGGCATTCCGTCGGCGCCCTTCCCA
GCAAGGAGCAGGGGGCGGGAAGACGGGCGGTGGCGGGATCAAGACAACAA
AAAATGTGTCCGACGCCCTTGTCGTTCCCTCGCACTCTCTTTCAGGCTTT
CAAGAAAGACGGCGGCATAGACCTCTACCTCATGCAGACCCGCCCGCACG
AGTGGCCGGATGGTCGCCTGGGAATCCTTCTCAAGCTCGAAGAGGACCCA
TACAGCAAACAGCACCCACTGCGGCACCCGAATCATCATCATCACCAGCG
GCCACTTTATTACGATCAGCAGCAAGAGAAGGTGGAGCAAGAGCAGCAAC
AGCAACAGCAGGGCCGAGAAACAGAGCAAGGCGAAGGACAAGTCGAAGGA
GAAGGTCGCGATTTCTTGGTCGGTCCAACAGGGCAAGCGGAAGAGAAAAG
ACAGCGCGCGTGTGTCGAAGAAGCATCAGCAGTCGGCGGTGTCGATGGCC
AACACAGTGCGGGTGCTAGTGGTGGTAGCCTGCCTTCTCAGACGGCTGGG
GCCGGCCTGCCATTGCTCTCTTTCTCATCTGCCTCACCTGCAGCCTCTTC
GTCATCAACCCTCTCTTTACCCGCTTCCTTTGCGGCTTCTTCGACTACTC
CTTTCTCCATCTCTTTTGGTCCGCTCTCTTCCTCCTCCCCCTTCCCCATC
TCGTTGTCCCGCCCTAATGCGCCCGCCCCCTCAGCCCTCTCCTTGGAGGC
ATCAACAAGTATCACGACCTTACCGCCTCCTCTGCTTCCGTCCCCTCATC
CATCCCCTCTCTCGCGACCTCATGACGAACGCTGGGTGGCAGGAAGGGAG
GAGTGGCGGCTTGAGAGAGAAGAGGAGAAATTGATGAGAGAGCGCGTACA
GGAAGGATGGGTGACAGGGCGGGAGGAGCAGGGAGCGGGGGGGGAGGGGA
CGGCAGAGGAGAGGCTGTCTGCTCTACCGGCCTGTGCACACATGTTGGTT
CCGTGCTTAAGCGAGGATGTAATGCGCGGCGTCTTTCAGTGAAGAGTGCG
TCACCTTCCGCCGGCGTGTCAACATCTCTCTCGCCCTCACTCCCGTCCCT
TGGCCTTCCTACCCTATTTCATACCGTTCTTCCTGGCCTGGCCTCGTTTC
CTCTCCCTCCCCTCCCCAAGCCCCCGCCCACCTCGGGAGTCTCTTTCCCA
CCTATCTGCTTCTCCCGAGCCTCAACCCACGTGGCCGCAAGCATCTTCTT
CAAATCAGCAGAGGCGAAGGAGGGGCAAGAGACAGGGATGGACGGGAGGA
CGACGAGGGGGCGTCTCGACGAGGAGGAAAAAGAAGCAGAGGACGATTGG
GGGAAAATGGAAGAGGTCCCGCCTTCGAGGCACATTTCCTGCCGCCCCAA
CTACCAGAAGGTGGCTCAGGCATTCCGTCGGCGCCCTTCCCAGCAAGGAG
CAGGGGGCGGGAAGACGGGCGGTGGCGGGATCAAGACAACAAAAAATGTG
TCCGACGCCCTTGTCGTTCCCTCGCACTCTCTTTCAGGCTTTCAAGAAAG
ACGGCGGCATAGACCTCTACCTCATGCAGACCCGCCCGCACGAGTGGCCG
GATGGTCGCCTGGGAATCCTTCTCAAGCTCGAAGAGGACCCATACAGCAA
ACAGCACCCACTGCGGCACCCGAATCATCATCATCACCAGCGGCCACTTT
ATTACGATCAGCAGCAAGAGAAGGTGGAGCAAGAGCAGCAACAGCAACAG
CAGGGCCGAGAAACAGAGCAAGGCGAAGGACAAGTCGAAGGAGAAGGTCG
CGATTTCTTGGTCGGTCCAACAGGGCAAGCGGAAGAGAAAAGACAGCGCG
CGTGTGTCGAAGAAGCATCAGCAGTCGGCGGTGTCGATGGCCAACACAGT
GCGGGTGCTAGTGGTGGTAGCCTGCCTTCTCAGACGGCTGGGGCCGGCCT
GCCATTGCTCTCTTTCTCATCTGCCTCACCTGCAGCCTCTTCGTCATCAA
CCCTCTCTTTACCCGCTTCCTTTGCGGCTTCTTCGACTACTCCTTTCTCC
ATCTCTTTTGGTCCGCTCTCTTCCTCCTCCCCCTTCCCCATCTCGTTGTC
CCGCCCTAATGCGCCCGCCCCCTCAGCCCTCTCCTTGGAGGCATCAACAA
GTATCACGACCTTACCGCCTCCTCTGCTTCCGTCCCCTCATCCATCCCCT
CTCTCGCGACCTCATGACGAACGCTGGGTGGCAGGAAGGGAGGAGTGGCG
GCTTGAGAGAGAAGAGGAGAAATTGATGAGAGAGCGCGTACAGGAAGGAT
GGGTGACAGGGCGGGAGGAGCAGGGAGCGGGGGGGGAGGGGACGGCAGAG
GAGAGGCTGTCTGCTCTACCGGCCTGTGCACACATGTTGGTTCCGTGCTT
AAGCGAGGATGTAATGCGCGGCGTCTTTCAGTGAAGAGTGCGTCACCTTC
CGCCGGCGTGTCAACATCTCTCTCGCCCTCACTCCCGTCCCTTGGCCTTC
CTACCCTATTTCATACCGTTCTTCCTGGCCTGGCCTCGTTTCCTCTCCCT
CCCCTCCCCAAGCCCCCGCCCACCTCGGGAGTCTCTTTCCCACCTATCTG
CTTCTCCCGAGCCTCAACCCACGTGGCCGCAAGCATCTTCTTCAAATCAG
CAGAGGCGAAGGAGGGGCAAGAGACAGGGATGGACGGGAGGACGACGAGG
GGGCGTCTCGACGAGGAGGAAAAAGAAGCAGAGGACGATTGGGGGAAAAT
GGAAGAGGTCCCGCCTTCGAGGCACATTTCCTGCCGCCCCAACTACCAGA
AGGTGGCTCAGGCATTCCGTCGGCGCCCTTCCCAGCAAGGAGCAGGGGGC
GGGAAGACGGGCGGTGGCGGGATCAAGACAACAAAAAATGTGTCCGACGC
CCTTGTCGTTCCCTCGCACTCTCTTTCAGGCTTTCAAGAAAGACGGCGGC
ATAGACCTCTACCTCATGCAGACCCGCCCGCACGAGTGGCCGGATGGTCG
CCTGGGAATCCTTCTCAAGCTCGAAGAGGACCCATACAGCAAACAGCACC
CACTGCGGCACCCGAATCATCATCATCACCAGCGGCCACTTTATTACGAT
CAGCAGCAAGAGAAGGTGGAGCAAGAGCAGCAACAGCAACAGCAGGGCCG
AGAAACAGAGCAAGGCGAAGGACAAGTCGAAGGAGAAGGTCGCGATTTCT
TGGTCGGTCCAACAGGGCAAGCGGAAGAGAAAAGACAGCGCGCGTGTGTC
GAAGAAGCATCAGCAGTCGGCGGTGTCGATGGCCAACACAGTGCGGGTGC
TAGTGGTGGTAGCCTGCCTTCTCAGACGGCTGGGGCCGGCCTGCCATTGC
TCTCTTTCTCATCTGCCTCACCTGCAGCCTCTTCGTCATCAACCCTCTCT
TTACCCGCTTCCTTTGCGGCTTCTTCGACTACTCCTTTCTCCATCTCTTT
TGGTCCGCTCTCTTCCTCCTCCCCCTTCCCCATCTCGTTGTCCCGCCCTA
ATGCGCCCGCCCCCTCAGCCCTCTCCTTGGAGGCATCAACAAGTATCACG
ACCTTACCGCCTCCTCTGCTTCCGTCCCCTCATCCATCCCCTCTCTCGCG
ACCTCATGACGAACGCTGGGTGGCAGGAAGGGAGGAGTGGCGGCTTGAGA
GAGAAGAGGAGAAATTGATGAGAGAGCGCGTACAGGAAGGATGGGTGACA
GGGCGGGAGGAGCAGGGAGCGGGGGGGGAGGGGACGGCAGAGGAGAGGCT
GTCTGCTCTACCGGCCTGTGCACACATGTTGGTTCCGTGCTTAAGCGAGG
ATGTAATGCGCGGCGTCTTTCAGTGAAGAGTGCGTCACCTTCCGCCGGCG
TGTCAACATCTCTCTCGCCCTCACTCCCGTCCCTTGGCCTTCCTACCCTA
TTTCATACCGTTCTTCCTGGCCTGGCCTCGTTTCCTCTCCCTCCCCTCCC
CAAGCCCCCGCCCACCTCGGGAGTCTCTTTCCCACCTATCTGCTTCTCCC
GAGCCTCAACCCACGTGGCCGCAAGCATCTTCTTCAAATCAGCAGAGGCG
AAGGAGGGGCAAGAGACAGGGATGGACGGGAGGACGACGAGGGGGCGTCT
CGACGAGGAGGAAAAAGAAGCAGAGGACGATTGGGGGAAAATGGAAGAGG
TCCCGCCTTCGAGGCACATTTCCTGCCGCCCCAACTACCAGAAGGTGGCT
CAGGCATTCCGTCGGCGCCCTTCCCAGCAAGGAGCAGGGGGCGGGAAGAC
GGGCGGTGGCGGGATCAAGACAACAAAAAATGTGTCCGACGCCCTTGTCG
TTCCCTCGCACTCTCTTTCAGGCTTTCAAGAAAGACGGCGGCATAGACCT
CTACCTCATGCAGACCCGCCCGCACGAGTGGCCGGATGGTCGCCTGGGAA
TCCTTCTCAAGCTCGAAG back to top
|