jgi.p|Nanoce1779_2|626167, mRNA_7990 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626167
Unique Name	mRNA_7990
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1105
Alignment location	scaffold_22:348213..349801 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626253
Track	FilteredModels2
ProteinId	626167

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:348213..349801 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626167	gene_7990	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626167	mRNA_7990-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7990	CDS_7990	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:348213..349801+
coding sequence from alignment at scaffold_22:348213..349801+

mRNA sequence

>mRNA_7990 ID=mRNA_7990|Name=jgi.p|Nanoce1779_2|626167|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
ACAGGCACCCCACCCATCGCGCTATCCGATATAATGCCGCTCAAGGTGAC
CATTGCCCTTGGCAAGGACAAGGTGATGGAGCTCGACCTTGCCAACAAGA
ACGCCACGGTGCAAGACCTGAAGGAGGCTTTTGCGAAAAAAAGGCGTGGC
TTGTCCCCCTCCCGTCAATCCTTCCGCCTGCCTGCAGACCCCTCTTCGAC
TGCGCCGTCCATTAAGCTCGACAAGCCCACCCAGAGTCTCGCTGAGTCGG
GATACAAGGAAGGGATGGTCTTGGTCTTCAAGGACCTTGGGCCCCAGATC
GGATACCGCACCGTCTTTATCGTGGAGTATCTGGGTCCCATCCTTATCAT
GCTCCTCTACGCCTCCCGCCCCTCCCTCCTCTATGGCGAGCCCCCCAAAG
GGTCGTCCTCCTTCCCTCCCTTCCCCCGCGAAACCCTCATCATTCTCGCC
TGCTGGATCGGACATTTTGTCAAGCGCGAGCTCGAGACACTCTTTGTTCA
CGTCTTCTCCCGGCCCACCATGCCCCTCCAGCAGCTTTTCGTCAACTGCG
CCTACTACTACTCCTTCGCCCTAGCCATCGGCTACTTCATCTGCTCTCCC
TCCTACCATCCCCCCCCTCTCCCTCCCTCCCTCTTCCTCCCTCCCTCCCT
CCCCTCCGTCGGCCTCCTCCTCTTCCTCCTCGCCGAAGCCGGTAACCTGT
ATTGCCATCTAATCCTCTCCTCCCTCCGTCCCTCCTCCACCAAAACCTCC
TCCCTCCCTCCCTCCCGATCCATCCCCCACGGCTTCCTCTTCACCTTTGT
ATCCTGCCCCAACTACTTCTGCGAGGTCCTGGCTTGGCTCGGCTTCTCCC
TGCTCACATTCCTCCCCCTCTCCCTCCTCTTCGCCCTCGTGGGCGGGGTC
CAAATGGCGCAGTGGGCGCAAGGAAAGCACCGCGGCTACTGCAAGGCCCA
CGGAGACGCCTACAAGAAGCTGGGACGAAAGGCGATGATCCCTGGTGTGC
TCTAGCTCCCCCATCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCTCCAGGCTGTATTGCCGGCAGGCTGTAACGACCATGGGTCGGTTAAAT
CCCTG

protein sequence of jgi.p|Nanoce1779_2|626167

>mRNA_7990-protein ID=mRNA_7990-protein|Name=jgi.p|Nanoce1779_2|626167|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPLKVTIALGKDKVMELDLANKNATVQDLKEAFAKKRRGLSPSRQSFRLP
ADPSSTAPSIKLDKPTQSLAESGYKEGMVLVFKDLGPQIGYRTVFIVEYL
GPILIMLLYASRPSLLYGEPPKGSSSFPPFPRETLIILACWIGHFVKREL
ETLFVHVFSRPTMPLQQLFVNCAYYYSFALAIGYFICSPSYHPPPLPPSL
FLPPSLPSVGLLLFLLAEAGNLYCHLILSSLRPSSTKTSSLPPSRSIPHG
FLFTFVSCPNYFCEVLAWLGFSLLTFLPLSLLFALVGGVQMAQWAQGKHR
GYCKAHGDAYKKLGRKAMIPGVL*

mRNA from alignment at scaffold_22:348213..349801+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7990 ID=mRNA_7990|Name=jgi.p|Nanoce1779_2|626167|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at scaffold_22:348213..349801+ (Nannochloropsis oceanica)
ACAGGCACCCCACCCATCGCGCTATCCGATATAATGCCGCTCAAGGTGAC
CATTGCCCTTGGCAAGGACAAGGTGATGGAGCTCGACCTTGCCAACAAGA
ACGCCACGGTGCAAGACCTGAAGGAGGCTTTTGCGAAAAAAGTTCGTTGC
CATGCATGATGCTTTGTATTTGCCCGTCATTCTTCCCTACCTACCTCGCT
TGCTTCGACATGCTTTCTGTCTTTTTCTGTTCGCTTGCATGTTAAAATTT
TCACTCACCCATCCCTTTCTCCCTTCCTGCCTACCCTTCGGTAGAGGCGT
GGCTTGTCCCCCTCCCGTCAATCCTTCCGCCTGCCTGCAGACCCCTCTTC
GACTGCGCCGTCCATTAAGCTCGACAAGCCCACCCAGAGTCTCGCTGAGT
CGGGATACAAGGAAGGGATGGTCTTGGTCTTCAAGGACCTTGGGCCCCAG
GTAGGCCTCCTCCCTCCCTCTCGTAGTATTGGATAGCTAGGTGTTTCTCG
TTCCTAACAATAAGGCTCTTGTAGACATACTTCTGAGAAATACGGATCTC
TCACAAGTGCCGTGACCTCCGCCCCTCCCTCCCTCGGCCCCCTTCCTCGC
TCCCTCAGATCGGATACCGCACCGTCTTTATCGTGGAGTATCTGGGTCCC
ATCCTTATCATGCTCCTCTACGCCTCCCGCCCCTCCCTCCTCTATGGCGA
GCCCCCCAAAGGGTCGTCCTCCTTCCCTCCCTTCCCCCGCGAAACCCTCA
TCATTCTCGCCTGCTGGATCGGACATTTTGTCAAGGTACGCCTCCACTTC
CGCTCTTCCCCCAACGCTATGAAGGTGGCCTCATGGAGCCCGGCTTTTTG
CGCACCTGCCCCCATCCACCCGCTTCACTTTCTCCACCCAAGATTCCGAC
TCTTTTCACCGTGACCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTGTCCAGCGCGAGCTCGAGACACTCTTTGTTCACGTCTTCTCCCGGCCC
ACCATGCCCCTCCAGCAGCTTTTCGTCAACTGCGCCTACTACTACTCCTT
CGCCCTAGCCATCGGCTACTTCATCTGCTCTCCCTCCTACCATCCCCCCC
CTCTCCCTCCCTCCCTCTTCCTCCCTCCCTCCCTCCCCTCCGTCGGCCTC
CTCCTCTTCCTCCTCGCCGAAGCCGGTAACCTGTATTGCCATCTAATCCT
CTCCTCCCTCCGTCCCTCCTCCACCAAAACCTCCTCCCTCCCTCCCTCCC
GATCCATCCCCCACGGCTTCCTCTTCACCTTTGTATCCTGCCCCAACTAC
TTCTGCGAGGTCCTGGCTTGGCTCGGCTTCTCCCTGCTCACATTCCTCCC
CCTCTCCCTCCTCTTCGCCCTCGTGGGCGGGGTCCAAATGGCGCAGTGGG
CGCAAGGAAAGCACCGCGGCTACTGCAAGGCCCACGGAGACGCCTACAAG
AAGCTGGGACGAAAGGCGATGATCCCTGGTGTGCTCTAGCTCCCCCATCG
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTCCAGGCTGTATTG
CCGGCAGGCTGTAACGACCATGGGTCGGTTAAATCCCTG

Coding sequence (CDS) from alignment at scaffold_22:348213..349801+

>mRNA_7990 ID=mRNA_7990|Name=jgi.p|Nanoce1779_2|626167|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_22:348213..349801+ (Nannochloropsis oceanica)
ATGCCGCTCAAGGTGACCATTGCCCTTGGCAAGGACAAGGTGATGGAGCT
CGACCTTGCCAACAAGAACGCCACGGTGCAAGACCTGAAGGAGGCTTTTG
CGAAAAAAAGGCGTGGCTTGTCCCCCTCCCGTCAATCCTTCCGCCTGCCT
GCAGACCCCTCTTCGACTGCGCCGTCCATTAAGCTCGACAAGCCCACCCA
GAGTCTCGCTGAGTCGGGATACAAGGAAGGGATGGTCTTGGTCTTCAAGG
ACCTTGGGCCCCAGATCGGATACCGCACCGTCTTTATCGTGGAGTATCTG
GGTCCCATCCTTATCATGCTCCTCTACGCCTCCCGCCCCTCCCTCCTCTA
TGGCGAGCCCCCCAAAGGGTCGTCCTCCTTCCCTCCCTTCCCCCGCGAAA
CCCTCATCATTCTCGCCTGCTGGATCGGACATTTTGTCAAGCGCGAGCTC
GAGACACTCTTTGTTCACGTCTTCTCCCGGCCCACCATGCCCCTCCAGCA
GCTTTTCGTCAACTGCGCCTACTACTACTCCTTCGCCCTAGCCATCGGCT
ACTTCATCTGCTCTCCCTCCTACCATCCCCCCCCTCTCCCTCCCTCCCTC
TTCCTCCCTCCCTCCCTCCCCTCCGTCGGCCTCCTCCTCTTCCTCCTCGC
CGAAGCCGGTAACCTGTATTGCCATCTAATCCTCTCCTCCCTCCGTCCCT
CCTCCACCAAAACCTCCTCCCTCCCTCCCTCCCGATCCATCCCCCACGGC
TTCCTCTTCACCTTTGTATCCTGCCCCAACTACTTCTGCGAGGTCCTGGC
TTGGCTCGGCTTCTCCCTGCTCACATTCCTCCCCCTCTCCCTCCTCTTCG
CCCTCGTGGGCGGGGTCCAAATGGCGCAGTGGGCGCAAGGAAAGCACCGC
GGCTACTGCAAGGCCCACGGAGACGCCTACAAGAAGCTGGGACGAAAGGC
GATGATCCCTGGTGTGCTCTAGATGCCGCTCAAGGTGACCATTGCCCTTG
GCAAGGACAAGGTGATGGAGCTCGACCTTGCCAACAAGAACGCCACGGTG
CAAGACCTGAAGGAGGCTTTTGCGAAAAAAAGGCGTGGCTTGTCCCCCTC
CCGTCAATCCTTCCGCCTGCCTGCAGACCCCTCTTCGACTGCGCCGTCCA
TTAAGCTCGACAAGCCCACCCAGAGTCTCGCTGAGTCGGGATACAAGGAA
GGGATGGTCTTGGTCTTCAAGGACCTTGGGCCCCAGATCGGATACCGCAC
CGTCTTTATCGTGGAGTATCTGGGTCCCATCCTTATCATGCTCCTCTACG
CCTCCCGCCCCTCCCTCCTCTATGGCGAGCCCCCCAAAGGGTCGTCCTCC
TTCCCTCCCTTCCCCCGCGAAACCCTCATCATTCTCGCCTGCTGGATCGG
ACATTTTGTCAAGCGCGAGCTCGAGACACTCTTTGTTCACGTCTTCTCCC
GGCCCACCATGCCCCTCCAGCAGCTTTTCGTCAACTGCGCCTACTACTAC
TCCTTCGCCCTAGCCATCGGCTACTTCATCTGCTCTCCCTCCTACCATCC
CCCCCCTCTCCCTCCCTCCCTCTTCCTCCCTCCCTCCCTCCCCTCCGTCG
GCCTCCTCCTCTTCCTCCTCGCCGAAGCCGGTAACCTGTATTGCCATCTA
ATCCTCTCCTCCCTCCGTCCCTCCTCCACCAAAACCTCCTCCCTCCCTCC
CTCCCGATCCATCCCCCACGGCTTCCTCTTCACCTTTGTATCCTGCCCCA
ACTACTTCTGCGAGGTCCTGGCTTGGCTCGGCTTCTCCCTGCTCACATTC
CTCCCCCTCTCCCTCCTCTTCGCCCTCGTGGGCGGGGTCCAAATGGCGCA
GTGGGCGCAAGGAAAGCACCGCGGCTACTGCAAGGCCCACGGAGACGCCT
ACAAGAAGCTGGGACGAAAGGCGATGATCCCTGGTGTGCTCTAGATGCCG
CTCAAGGTGACCATTGCCCTTGGCAAGGACAAGGTGATGGAGCTCGACCT
TGCCAACAAGAACGCCACGGTGCAAGACCTGAAGGAGGCTTTTGCGAAAA
AAAGGCGTGGCTTGTCCCCCTCCCGTCAATCCTTCCGCCTGCCTGCAGAC
CCCTCTTCGACTGCGCCGTCCATTAAGCTCGACAAGCCCACCCAGAGTCT
CGCTGAGTCGGGATACAAGGAAGGGATGGTCTTGGTCTTCAAGGACCTTG
GGCCCCAGATCGGATACCGCACCGTCTTTATCGTGGAGTATCTGGGTCCC
ATCCTTATCATGCTCCTCTACGCCTCCCGCCCCTCCCTCCTCTATGGCGA
GCCCCCCAAAGGGTCGTCCTCCTTCCCTCCCTTCCCCCGCGAAACCCTCA
TCATTCTCGCCTGCTGGATCGGACATTTTGTCAAGCGCGAGCTCGAGACA
CTCTTTGTTCACGTCTTCTCCCGGCCCACCATGCCCCTCCAGCAGCTTTT
CGTCAACTGCGCCTACTACTACTCCTTCGCCCTAGCCATCGGCTACTTCA
TCTGCTCTCCCTCCTACCATCCCCCCCCTCTCCCTCCCTCCCTCTTCCTC
CCTCCCTCCCTCCCCTCCGTCGGCCTCCTCCTCTTCCTCCTCGCCGAAGC
CGGTAACCTGTATTGCCATCTAATCCTCTCCTCCCTCCGTCCCTCCTCCA
CCAAAACCTCCTCCCTCCCTCCCTCCCGATCCATCCCCCACGGCTTCCTC
TTCACCTTTGTATCCTGCCCCAACTACTTCTGCGAGGTCCTGGCTTGGCT
CGGCTTCTCCCTGCTCACATTCCTCCCCCTCTCCCTCCTCTTCGCCCTCG
TGGGCGGGGTCCAAATGGCGCAGTGGGCGCAAGGAAAGCACCGCGGCTAC
TGCAAGGCCCACGGAGACGCCTACAAGAAGCTGGGACGAAAGGCGATGAT
CCCTGGTGTGCTCTAGATGCCGCTCAAGGTGACCATTGCCCTTGGCAAGG
ACAAGGTGATGGAGCTCGACCTTGCCAACAAGAACGCCACGGTGCAAGAC
CTGAAGGAGGCTTTTGCGAAAAAAAGGCGTGGCTTGTCCCCCTCCCGTCA
ATCCTTCCGCCTGCCTGCAGACCCCTCTTCGACTGCGCCGTCCATTAAGC
TCGACAAGCCCACCCAGAGTCTCGCTGAGTCGGGATACAAGGAAGGGATG
GTCTTGGTCTTCAAGGACCTTGGGCCCCAGATCGGATACCGCACCGTCTT
TATCGTGGAGTATCTGGGTCCCATCCTTATCATGCTCCTCTACGCCTCCC
GCCCCTCCCTCCTCTATGGCGAGCCCCCCAAAGGGTCGTCCTCCTTCCCT
CCCTTCCCCCGCGAAACCCTCATCATTCTCGCCTGCTGGATCGGACATTT
TGTCAAGCGCGAGCTCGAGACACTCTTTGTTCACGTCTTCTCCCGGCCCA
CCATGCCCCTCCAGCAGCTTTTCGTCAACTGCGCCTACTACTACTCCTTC
GCCCTAGCCATCGGCTACTTCATCTGCTCTCCCTCCTACCATCCCCCCCC
TCTCCCTCCCTCCCTCTTCCTCCCTCCCTCCCTCCCCTCCGTCGGCCTCC
TCCTCTTCCTCCTCGCCGAAGCCGGTAACCTGTATTGCCATCTAATCCTC
TCCTCCCTCCGTCCCTCCTCCACCAAAACCTCCTCCCTCCCTCCCTCCCG
ATCCATCCCCCACGGCTTCCTCTTCACCTTTGTATCCTGCCCCAACTACT
TCTGCGAGGTCCTGGCTTGGCTCGGCTTCTCCCTGCTCACATTCCTCCCC
CTCTCCCTCCTCTTCGCCCTCGTGGGCGGGGTCCAAATGGCGCAGTGGGC
GCAAGGAAAGCACCGCGGCTACTGCAAGGCCCACGGAGACGCCTACAAGA
AGCTGGGACGAAAGGCGATGATCCCTGGTGTGCTCTAG

Synonyms

Publications