jgi.p|Nanoce1779_2|574183, mRNA_799 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574183
Unique NamemRNA_799
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1187
Alignment locationscaffold_2:459901..461319 +

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Properties
Property NameValue
TranscriptId574269
TrackFilteredModels2
ProteinId574183
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:459901..461319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574183gene_799Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574183mRNA_799-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_799CDS_799Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_799 ID=mRNA_799|Name=jgi.p|Nanoce1779_2|574183|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp
ACAGCCACTGTCCCAGCGCCTAGCTATTAGTCATGAAGCTCTCCAGTGCC
ACCGTCATCTTGGCCGCCGCTCTCCTGAGCCTGACCTCCGCCTTTGTCCT
TCCCGTCCCGGGCAGCAGCAGCAGCAGCAGCAGCAGCACCTCTATATCAA
GAACCTATCGACCCAAGACAACGACAACTTTCGCGTCCGGGGGCAGCAGC
GAGTTTAACAAGAACCGGGCGGCCCGCAAGCCTGGTCCCATGGATCTCGT
AGTGGAATTGCAGAAGCCTCTTGGAATTGTCCTGGAGGAGGACGAGAAGG
GGAACGTCTACGTGAAGGAGCTTTCCCCCGCCGGAAACGCTGCGCGGTCG
GGCAAGGTCGAGAAGGGTGACCTGGTGACGATGATTAGCGCCACATTTGG
GGACGAGTGCTGGAGCGCGCGGGGGGCTGGATTAGGGATGATTATGCAGG
CCATCAAGGTTCGACAGGGGAATTCAGTGAAGATCGTGTTGGAGCGAGCG
AAGAAGGTGGCGCCCAAGAAGAACATGTTCAGTACCCCAGCCCCGAAGCC
CAAGCCAGCACCAGTGAAGCCGGATGAGGCGACATTGCTGAAACAATTGG
AGGCGGAGGAGAAGGGGAAGAAGAAATTTTTCGGACTGTTTTAAAGTGAA
TGGAAAACAAGGGAAACGCGAGGTGTAATTTGATCCCTTGTGTGAAGTAA
GTAAGCAGTGTGAGTGACGAGCGAGGCCGAGCTAGTATATTTGGTGTCTG
TGTGTATCTCTGTGTGTTCGTCACATTCGTTTTTACTGTTACTGTGTCGT
CCTCCTCACAAAGTGTGCGCGTGGTACTTGTCCCCTCTTCCTTTTCATCC
CTCCTGCTTTGCCAAGGGGGAGAGGGAGATCGCGGCAGTAGAGGAGACAA
ACCGCATAAACTAAATCAAGACCGTTCGTTCTAGTTTATAATATTGTTTT
TTTGGAACAGAGGAGGGACGCAAATGGAGAGGAGATAGGCTCGTGCAACA
CACACAGAAAGTGCACAGCCACACACGTGCGCGAATGATACGCTGCACGC
ACTCTGCGCGCGTTGAGGAAAAAGAGAAAGAACGAAACAAACAAAATGGT
AACAAGTGATTTGACACGATTGTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCT
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protein sequence of jgi.p|Nanoce1779_2|574183

>mRNA_799-protein ID=mRNA_799-protein|Name=jgi.p|Nanoce1779_2|574183|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MKLSSATVILAAALLSLTSAFVLPVPGSSSSSSSSTSISRTYRPKTTTTF
ASGGSSEFNKNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPA
GNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVK
IVLERAKKVAPKKNMFSTPAPKPKPAPVKPDEATLLKQLEAEEKGKKKFF
GLF*
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mRNA from alignment at scaffold_2:459901..461319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_799 ID=mRNA_799|Name=jgi.p|Nanoce1779_2|574183|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at scaffold_2:459901..461319+ (Nannochloropsis oceanica)
ACAGCCACTGTCCCAGCGCCTAGCTATTAGTCATGAAGCTCTCCAGTGCC
ACCGTCATCTTGGCCGCCGCTCTCCTGAGCCTGACCTCCGCCTTTGTCCT
TCCCGTCCCGGGCAGCAGCAGCAGCAGCAGCAGCAGCACCTCTATATCAA
GAACCTATCGGTGCGTCCTAATTTTGAGCGTCGACGTAGACTAAAGTGAC
GCATGTCTCAACCTGGTTGCACGAAATCCTCATGACGTCTCCCCTTCCAT
TACTATTTCTCCCTACCAGACCCAAGACAACGACAACTTTCGCGTCCGGG
GGCAGCAGCGAGTTTAACAAGAACCGGGCGGCCCGCAAGCCTGGTCCCAT
GGATCTCGTAGTGGAATTGCAGAAGCCTCTTGGAATTGTCCTGGAGGAGG
ACGAGAAGGGGAACGTCTACGTGAAGGAGCTTTCCCCCGCCGGAAACGCT
GCGCGGGTACGTAATTCTTTTACCAAAAATCGCCCGAATTAATATTGTAT
TAAAACATGTTCACACCTCTCATCCATCCCTCCACTCATGTCTCCCGTGT
TCTTTCACCGTCGCCCCCCCCCCACATAGTCGGGCAAGGTCGAGAAGGGT
GACCTGGTGACGATGATTAGCGCCACATTTGGGGACGAGTGCTGGAGCGC
GCGGGGGGCTGGATTAGGGATGATTATGCAGGCCATCAAGGTTCGACAGG
GGAATTCAGTGAAGATCGTGTTGGAGCGAGCGAAGAAGGTGGCGCCCAAG
AAGAACATGTTCAGTACCCCAGCCCCGAAGCCCAAGCCAGCACCAGTGAA
GCCGGATGAGGCGACATTGCTGAAACAATTGGAGGCGGAGGAGAAGGGGA
AGAAGAAATTTTTCGGACTGTTTTAAAGTGAATGGAAAACAAGGGAAACG
CGAGGTGTAATTTGATCCCTTGTGTGAAGTAAGTAAGCAGTGTGAGTGAC
GAGCGAGGCCGAGCTAGTATATTTGGTGTCTGTGTGTATCTCTGTGTGTT
CGTCACATTCGTTTTTACTGTTACTGTGTCGTCCTCCTCACAAAGTGTGC
GCGTGGTACTTGTCCCCTCTTCCTTTTCATCCCTCCTGCTTTGCCAAGGG
GGAGAGGGAGATCGCGGCAGTAGAGGAGACAAACCGCATAAACTAAATCA
AGACCGTTCGTTCTAGTTTATAATATTGTTTTTTTGGAACAGAGGAGGGA
CGCAAATGGAGAGGAGATAGGCTCGTGCAACACACACAGAAAGTGCACAG
CCACACACGTGCGCGAATGATACGCTGCACGCACTCTGCGCGCGTTGAGG
AAAAAGAGAAAGAACGAAACAAACAAAATGGTAACAAGTGATTTGACACG
ATTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTC
TCTCTCTCTCTCTCTCTCT
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Coding sequence (CDS) from alignment at scaffold_2:459901..461319+

>mRNA_799 ID=mRNA_799|Name=jgi.p|Nanoce1779_2|574183|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_2:459901..461319+ (Nannochloropsis oceanica)
ATGAAGCTCTCCAGTGCCACCGTCATCTTGGCCGCCGCTCTCCTGAGCCT
GACCTCCGCCTTTGTCCTTCCCGTCCCGGGCAGCAGCAGCAGCAGCAGCA
GCAGCACCTCTATATCAAGAACCTATCGACCCAAGACAACGACAACTTTC
GCGTCCGGGGGCAGCAGCGAGTTTAACAAGAACCGGGCGGCCCGCAAGCC
TGGTCCCATGGATCTCGTAGTGGAATTGCAGAAGCCTCTTGGAATTGTCC
TGGAGGAGGACGAGAAGGGGAACGTCTACGTGAAGGAGCTTTCCCCCGCC
GGAAACGCTGCGCGGTCGGGCAAGGTCGAGAAGGGTGACCTGGTGACGAT
GATTAGCGCCACATTTGGGGACGAGTGCTGGAGCGCGCGGGGGGCTGGAT
TAGGGATGATTATGCAGGCCATCAAGGTTCGACAGGGGAATTCAGTGAAG
ATCGTGTTGGAGCGAGCGAAGAAGGTGGCGCCCAAGAAGAACATGTTCAG
TACCCCAGCCCCGAAGCCCAAGCCAGCACCAGTGAAGCCGGATGAGGCGA
CATTGCTGAAACAATTGGAGGCGGAGGAGAAGGGGAAGAAGAAATTTTTC
GGACTGTTTTAAATGAAGCTCTCCAGTGCCACCGTCATCTTGGCCGCCGC
TCTCCTGAGCCTGACCTCCGCCTTTGTCCTTCCCGTCCCGGGCAGCAGCA
GCAGCAGCAGCAGCAGCACCTCTATATCAAGAACCTATCGACCCAAGACA
ACGACAACTTTCGCGTCCGGGGGCAGCAGCGAGTTTAACAAGAACCGGGC
GGCCCGCAAGCCTGGTCCCATGGATCTCGTAGTGGAATTGCAGAAGCCTC
TTGGAATTGTCCTGGAGGAGGACGAGAAGGGGAACGTCTACGTGAAGGAG
CTTTCCCCCGCCGGAAACGCTGCGCGGTCGGGCAAGGTCGAGAAGGGTGA
CCTGGTGACGATGATTAGCGCCACATTTGGGGACGAGTGCTGGAGCGCGC
GGGGGGCTGGATTAGGGATGATTATGCAGGCCATCAAGGTTCGACAGGGG
AATTCAGTGAAGATCGTGTTGGAGCGAGCGAAGAAGGTGGCGCCCAAGAA
GAACATGTTCAGTACCCCAGCCCCGAAGCCCAAGCCAGCACCAGTGAAGC
CGGATGAGGCGACATTGCTGAAACAATTGGAGGCGGAGGAGAAGGGGAAG
AAGAAATTTTTCGGACTGTTTTAAATGAAGCTCTCCAGTGCCACCGTCAT
CTTGGCCGCCGCTCTCCTGAGCCTGACCTCCGCCTTTGTCCTTCCCGTCC
CGGGCAGCAGCAGCAGCAGCAGCAGCAGCACCTCTATATCAAGAACCTAT
CGACCCAAGACAACGACAACTTTCGCGTCCGGGGGCAGCAGCGAGTTTAA
CAAGAACCGGGCGGCCCGCAAGCCTGGTCCCATGGATCTCGTAGTGGAAT
TGCAGAAGCCTCTTGGAATTGTCCTGGAGGAGGACGAGAAGGGGAACGTC
TACGTGAAGGAGCTTTCCCCCGCCGGAAACGCTGCGCGGTCGGGCAAGGT
CGAGAAGGGTGACCTGGTGACGATGATTAGCGCCACATTTGGGGACGAGT
GCTGGAGCGCGCGGGGGGCTGGATTAGGGATGATTATGCAGGCCATCAAG
GTTCGACAGGGGAATTCAGTGAAGATCGTGTTGGAGCGAGCGAAGAAGGT
GGCGCCCAAGAAGAACATGTTCAGTACCCCAGCCCCGAAGCCCAAGCCAG
CACCAGTGAAGCCGGATGAGGCGACATTGCTGAAACAATTGGAGGCGGAG
GAGAAGGGGAAGAAGAAATTTTTCGGACTGTTTTAA
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Synonyms
Publications