jgi.p|Nanoce1779_2|600792, mRNA_7988 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600792
Unique NamemRNA_7988
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_22:343616..344966 +

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Properties
Property NameValue
TranscriptId600878
TrackFilteredModels2
ProteinId600792
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:343616..344966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600792gene_7988Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600792mRNA_7988-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7988CDS_7988Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7988 ID=mRNA_7988|Name=jgi.p|Nanoce1779_2|600792|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
CAGGCCAATAAACATGCCCAACGACGATGCGGGGATCATGGTGGTGGAGG
CAGGGCAAGTAGAGGAGCGGATGGAGCAGGACCAGGAGGGCAACAATCCG
GCATTGGAGAGCAGCAGCAGCGCGGAATTGGCTCCTTTGACACGGCCACA
GTATAAGCCTTTGCCAGCGAATGAGATGGAGGGTGGTCGTGCCGCCTACC
GCCGCATCCGCGTCCCGCCCAACCGTCTCACCCCCCTCCGCCAGCAGTGG
GAAGCAGTCATGCAGCCTCTGATTGAGCACCTGCGGTTACAAATTCGCTA
TAATGCCAAGAACAGGTGTGTGGAGTTGAAGACATCTCCACACACGACGG
ACCTGTCCGCCATTCAGAAGGGGGCCGATTTTCTTCAAGCCTTTATGATG
GGCTTCGAGCTGCAGGACGCCGTGGCCCTCCTCCGCTTGGAGGACCTGTT
CATCGACTCCTTCATGGTAACGGACGTGAAGCTCTTGTCGGGAGACCACC
TGTCTCGCGCAATTGGCCGAGTGGCGGGGCAGGACGGCAAGACGCGATTC
GCCATCGAGAACGCCACGAGGACTCGGATTGTGGTGGCCGACCAGCAGGT
GCACATCTTGGGCAGTTTCGCCAACATCAAGCTGGCGAGAGACGCGGTGT
GTGCGCTGGTGATGGGGGCGCCGCCTGGGAAGGTATACAATCAGTTGAGG
CAGACGAGCCGACGGCTGGCGGAGAGGTTTTAAGGAGCGAGCGAGGAAGG
GAGGGAAGGAGGGAGGGCAAGCGAATGTAGATGGACGGAAGGAAGAGGGG
AGATGCAGTATTGTACATGGGAATGAT
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protein sequence of jgi.p|Nanoce1779_2|600792

>mRNA_7988-protein ID=mRNA_7988-protein|Name=jgi.p|Nanoce1779_2|600792|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MPNDDAGIMVVEAGQVEERMEQDQEGNNPALESSSSAELAPLTRPQYKPL
PANEMEGGRAAYRRIRVPPNRLTPLRQQWEAVMQPLIEHLRLQIRYNAKN
RCVELKTSPHTTDLSAIQKGADFLQAFMMGFELQDAVALLRLEDLFIDSF
MVTDVKLLSGDHLSRAIGRVAGQDGKTRFAIENATRTRIVVADQQVHILG
SFANIKLARDAVCALVMGAPPGKVYNQLRQTSRRLAERF*
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mRNA from alignment at scaffold_22:343616..344966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7988 ID=mRNA_7988|Name=jgi.p|Nanoce1779_2|600792|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp|location=Sequence derived from alignment at scaffold_22:343616..344966+ (Nannochloropsis oceanica)
CAGGCCAATAAACATGCCCAACGACGATGCGGGGATCATGGTGGTGGAGG
CAGGGCAAGTAGAGGAGCGGATGGAGCAGGACCAGGAGGGCAACAATCCG
GCATTGGAGAGCAGCAGCAGCGCGGAATTGGCTCCTTTGACACGGCCACA
GTATAAGCCTTTGCCAGCGAATGAGATGGAGGTGAGTTTTTGTGGGAGAA
TGGCGGGAGGGCAGGGAGGAAAAGATAAGCGGATGGGTGGGAATGTGGGA
GGGGAGGTAGAGAGTTTGCTTGCAAGGGACTGAAAACTAAGCCTCCCTCA
AGCACAAGCACGCAGCGGCAGTGCAAGCACTGCGGGTGTTATTGTCTGCG
TTTGCCTGTGTGCACGGTACAAATCCACCCTCTTGCTAGATGTGTCCTCA
AATGATGAGCCAACCTAAAAATCACCATCTTTCGATTGAGCGCCCTACAC
AAGCGCCTTGAAACGAAAATTTAGCAGCATACAATGCTCCTGATGCGCGT
ACACATCTATACCTAACGATCACTCTACACACGCGCCCCATCCCCCTCCC
CACGATTCATCCTCACTACTCCCCCTATCCTTTCTCCCTCCCTCCCTTCC
TCTCAGGGTGGTCGTGCCGCCTACCGCCGCATCCGCGTCCCGCCCAACCG
TCTCACCCCCCTCCGCCAGCAGTGGGAAGCAGTCATGCAGCCTCTGATTG
AGCACCTGCGGTTACAAATTCGCTATAATGCCAAGAACAGGTATTACCAG
GCCCCCCTCCCTCATTCCTCCCCTCCCCCCCACTGGCACTCACTGCCTCC
CTTCTCCCTGTCCCCTCCCTCCCTTCACCCACATCGCAGGTGTGTGGAGT
TGAAGACATCTCCACACACGACGGACCTGTCCGCCATTCAGAAGGGGGCC
GATTTTCTTCAAGCCTTTATGATGGGCTTCGAGCTGCAGGACGCCGTGGC
CCTCCTCCGCTTGGAGGACCTGTTCATCGACTCCTTCATGGTAACGGACG
TGAAGCTCTTGTCGGGAGACCACCTGTCTCGCGCAATTGGCCGAGTGGCG
GGGCAGGACGGCAAGACGCGATTCGCCATCGAGAACGCCACGAGGACTCG
GATTGTGGTGGCCGACCAGCAGGTGCACATCTTGGGCAGTTTCGCCAACA
TCAAGCTGGCGAGAGACGCGGTGTGTGCGCTGGTGATGGGGGCGCCGCCT
GGGAAGGTATACAATCAGTTGAGGCAGACGAGCCGACGGCTGGCGGAGAG
GTTTTAAGGAGCGAGCGAGGAAGGGAGGGAAGGAGGGAGGGCAAGCGAAT
GTAGATGGACGGAAGGAAGAGGGGAGATGCAGTATTGTACATGGGAATGA
T
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Coding sequence (CDS) from alignment at scaffold_22:343616..344966+

>mRNA_7988 ID=mRNA_7988|Name=jgi.p|Nanoce1779_2|600792|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_22:343616..344966+ (Nannochloropsis oceanica)
ATGCCCAACGACGATGCGGGGATCATGGTGGTGGAGGCAGGGCAAGTAGA
GGAGCGGATGGAGCAGGACCAGGAGGGCAACAATCCGGCATTGGAGAGCA
GCAGCAGCGCGGAATTGGCTCCTTTGACACGGCCACAGTATAAGCCTTTG
CCAGCGAATGAGATGGAGGGTGGTCGTGCCGCCTACCGCCGCATCCGCGT
CCCGCCCAACCGTCTCACCCCCCTCCGCCAGCAGTGGGAAGCAGTCATGC
AGCCTCTGATTGAGCACCTGCGGTTACAAATTCGCTATAATGCCAAGAAC
AGGTGTGTGGAGTTGAAGACATCTCCACACACGACGGACCTGTCCGCCAT
TCAGAAGGGGGCCGATTTTCTTCAAGCCTTTATGATGGGCTTCGAGCTGC
AGGACGCCGTGGCCCTCCTCCGCTTGGAGGACCTGTTCATCGACTCCTTC
ATGGTAACGGACGTGAAGCTCTTGTCGGGAGACCACCTGTCTCGCGCAAT
TGGCCGAGTGGCGGGGCAGGACGGCAAGACGCGATTCGCCATCGAGAACG
CCACGAGGACTCGGATTGTGGTGGCCGACCAGCAGGTGCACATCTTGGGC
AGTTTCGCCAACATCAAGCTGGCGAGAGACGCGGTGTGTGCGCTGGTGAT
GGGGGCGCCGCCTGGGAAGGTATACAATCAGTTGAGGCAGACGAGCCGAC
GGCTGGCGGAGAGGTTTTAAATGCCCAACGACGATGCGGGGATCATGGTG
GTGGAGGCAGGGCAAGTAGAGGAGCGGATGGAGCAGGACCAGGAGGGCAA
CAATCCGGCATTGGAGAGCAGCAGCAGCGCGGAATTGGCTCCTTTGACAC
GGCCACAGTATAAGCCTTTGCCAGCGAATGAGATGGAGGGTGGTCGTGCC
GCCTACCGCCGCATCCGCGTCCCGCCCAACCGTCTCACCCCCCTCCGCCA
GCAGTGGGAAGCAGTCATGCAGCCTCTGATTGAGCACCTGCGGTTACAAA
TTCGCTATAATGCCAAGAACAGGTGTGTGGAGTTGAAGACATCTCCACAC
ACGACGGACCTGTCCGCCATTCAGAAGGGGGCCGATTTTCTTCAAGCCTT
TATGATGGGCTTCGAGCTGCAGGACGCCGTGGCCCTCCTCCGCTTGGAGG
ACCTGTTCATCGACTCCTTCATGGTAACGGACGTGAAGCTCTTGTCGGGA
GACCACCTGTCTCGCGCAATTGGCCGAGTGGCGGGGCAGGACGGCAAGAC
GCGATTCGCCATCGAGAACGCCACGAGGACTCGGATTGTGGTGGCCGACC
AGCAGGTGCACATCTTGGGCAGTTTCGCCAACATCAAGCTGGCGAGAGAC
GCGGTGTGTGCGCTGGTGATGGGGGCGCCGCCTGGGAAGGTATACAATCA
GTTGAGGCAGACGAGCCGACGGCTGGCGGAGAGGTTTTAAATGCCCAACG
ACGATGCGGGGATCATGGTGGTGGAGGCAGGGCAAGTAGAGGAGCGGATG
GAGCAGGACCAGGAGGGCAACAATCCGGCATTGGAGAGCAGCAGCAGCGC
GGAATTGGCTCCTTTGACACGGCCACAGTATAAGCCTTTGCCAGCGAATG
AGATGGAGGGTGGTCGTGCCGCCTACCGCCGCATCCGCGTCCCGCCCAAC
CGTCTCACCCCCCTCCGCCAGCAGTGGGAAGCAGTCATGCAGCCTCTGAT
TGAGCACCTGCGGTTACAAATTCGCTATAATGCCAAGAACAGGTGTGTGG
AGTTGAAGACATCTCCACACACGACGGACCTGTCCGCCATTCAGAAGGGG
GCCGATTTTCTTCAAGCCTTTATGATGGGCTTCGAGCTGCAGGACGCCGT
GGCCCTCCTCCGCTTGGAGGACCTGTTCATCGACTCCTTCATGGTAACGG
ACGTGAAGCTCTTGTCGGGAGACCACCTGTCTCGCGCAATTGGCCGAGTG
GCGGGGCAGGACGGCAAGACGCGATTCGCCATCGAGAACGCCACGAGGAC
TCGGATTGTGGTGGCCGACCAGCAGGTGCACATCTTGGGCAGTTTCGCCA
ACATCAAGCTGGCGAGAGACGCGGTGTGTGCGCTGGTGATGGGGGCGCCG
CCTGGGAAGGTATACAATCAGTTGAGGCAGACGAGCCGACGGCTGGCGGA
GAGGTTTTAA
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Synonyms
Publications