jgi.p|Nanoce1779_2|532056, mRNA_7987 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532056
Unique Name	mRNA_7987
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	861
Alignment location	scaffold_22:339844..341366 +

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Properties


Property Name	Value
TranscriptId	532142
Track	FilteredModels2
ProteinId	532056

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:339844..341366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532056	gene_7987	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532056	mRNA_7987-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7987	CDS_7987	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:339844..341366+
coding sequence from alignment at scaffold_22:339844..341366+

mRNA sequence

>mRNA_7987 ID=mRNA_7987|Name=jgi.p|Nanoce1779_2|532056|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGCTGGACCGTTGGAAGAAGCTGCACAAGGATTTGTTCAACGCCAAAAC
GGGCACCTTCGACCTTAGCAAGGTCCCGGATGTGCACGACAACATCAGGT
ACGACATGCTCCACAACTGGCACCTGGGCCTGCAGGGCGTGGACGAGCTC
TACGACCTGGCCAAGGCCTTCGCGGACACCATTGTGCCCCAGGAGTACGG
TGTGGACCCGGAGGAGAAGAGGATACTGGGCAGCCACATGTGCCAGGCCC
TGCTGGAGAAGATCAAGTACGACCTGATCATCGCCCGGGGCGACGAAAAC
TTCGACGTCCGGTACAACCTGGACCTCGCCCACGCCGACGACCTGGCCAT
CAACTCCCTCGGCAGGAGAGTCAGGACCCGGCTCTATTTCACCAGCGAGT
CCCATCTGCACGCCCTCCTTAACGTCATGCGTTTTCCCCCCGAAAAGGAC
GAGGAGGGAGGGGGAGAGGGCGCGGGGGAGGGGGGGCTGGCCAGTTGCTT
CACAGAGGAGGCGAGGCGAGTGATCGAAAGCACACCCGAGCTGTGCTACC
TAACGCACGTGGTCCTGCGCATGTTCGAGGACCTGGACAAGCACGAGGAC
GACCCCACGCGATTCCGCATCGAGATCCTTTTTTCTCCGGGTACGTTTTC
GGTCTTGTTTCCCTATCATAATCGTATCTTCATTCATTTGTTCGCTCATT
CATTCATCGATTCCCGCATCTTCAAATTCCTTCCCGACCACCCCCCACCC
ATTCCCCCACCACCCCACCAGGCGTCACTGCCCACCCGTCCCCCGTCGCC
AGCTCCCTCGCGGAGCACGTGCACCTCAAGCACATCGAGTGCCAGCGATG
GCACGTTATGA

protein sequence of jgi.p|Nanoce1779_2|532056

>mRNA_7987-protein ID=mRNA_7987-protein|Name=jgi.p|Nanoce1779_2|532056|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MLDRWKKLHKDLFNAKTGTFDLSKVPDVHDNIRYDMLHNWHLGLQGVDEL
YDLAKAFADTIVPQEYGVDPEEKRILGSHMCQALLEKIKYDLIIARGDEN
FDVRYNLDLAHADDLAINSLGRRVRTRLYFTSESHLHALLNVMRFPPEKD
EEGGGEGAGEGGLASCFTEEARRVIESTPELCYLTHVVLRMFEDLDKHED
DPTRFRIEILFSPGTFSVLFPYHNRIFIHLFAHSFIDSRIFKFLPDHPPP
IPPPPHQASLPTRPPSPAPSRSTCTSSTSSASDGTL*

mRNA from alignment at scaffold_22:339844..341366+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7987 ID=mRNA_7987|Name=jgi.p|Nanoce1779_2|532056|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp|location=Sequence derived from alignment at scaffold_22:339844..341366+ (Nannochloropsis oceanica)
ATGCTGGACCGTTGGAAGAAGCTGCACAAGGATTTGTTCAACGCCAAAAC
GGGCACCTTCGACCTTAGCAAGGTCCCGGATGTGCACGACAACATCAGGT
GGGGCCTCCCTCCCTCCCTCCCTGCCTCTCTCCCTGCCTGCCTCCCTCCC
CCCCTTCTCAACAAAATGAGATGAATGCATGCTCTCGTTTCTTTCTCATT
GATTGATTGATTGATTGATTGCTTGATATGTTGATTTATATATGTATTTA
TAAATTGATAATTCGTTGATTGATTAATTAATCATTATTTACTAAATTGT
TGATCGATTGATCGATGATCTATGCAATTATTTCTGTATTTATTGGATTC
AATCAGGTACGACATGCTCCACAACTGGCACCTGGGCCTGCAGGGCGTGG
ACGAGCTCTACGACCTGGCCAAGGCCTTCGCGGACACCATTGTGCCCCAG
GAGTACGGTGTGGACCCGGAGGAGAAGAGGATACTGGGCAGCCACATGTG
AGATGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGCTACTCG
CGTCACAGGTGGAGACGCGAGACAAGACGCCGCAAACACCGTCCCTCGAG
CACGCGAATGGAAGGGCTGGGTCTCCTCGTGCCTGTCATTGCATTGCCCT
CCTGTCACTGCCCTCCGCCACCAACGGGCCCCCTTCCAATCTTCTAGGGG
ACCGAGGAGGCAGGGATGCCGGTGGAAGGAGGAACGACAAGACCGACTGA
CAAAAGCATCCCATCCACGCCCTCTCGTGCATATCTACTACCCCAGGTGC
CAGGCCCTGCTGGAGAAGATCAAGTACGACCTGATCATCGCCCGGGGCGA
CGAAAACTTCGACGTCCGGTACAACCTGGACCTCGCCCACGCCGACGACC
TGGCCATCAACTCCCTCGGCAGGAGAGTCAGGTGGGTAAGCACGATGCTC
CCACCCTCCTTCCCTCCCTCCCTCCCTATCTTTTGGCTGTCCTCCCTCAC
GCCCTTCCTCCCTCCCTCTTTCGCTCCCTCCCTCAGGACCCGGCTCTATT
TCACCAGCGAGTCCCATCTGCACGCCCTCCTTAACGTCATGCGTTTTCCC
CCCGAAAAGGACGAGGAGGGAGGGGGAGAGGGCGCGGGGGAGGGGGGGCT
GGCCAGTTGCTTCACAGAGGAGGCGAGGCGAGTGATCGAAAGCACACCCG
AGCTGTGCTACCTAACGCACGTGGTCCTGCGCATGTTCGAGGACCTGGAC
AAGCACGAGGACGACCCCACGCGATTCCGCATCGAGATCCTTTTTTCTCC
GGGTACGTTTTCGGTCTTGTTTCCCTATCATAATCGTATCTTCATTCATT
TGTTCGCTCATTCATTCATCGATTCCCGCATCTTCAAATTCCTTCCCGAC
CACCCCCCACCCATTCCCCCACCACCCCACCAGGCGTCACTGCCCACCCG
TCCCCCGTCGCCAGCTCCCTCGCGGAGCACGTGCACCTCAAGCACATCGA
GTGCCAGCGATGGCACGTTATGA

Coding sequence (CDS) from alignment at scaffold_22:339844..341366+

>mRNA_7987 ID=mRNA_7987|Name=jgi.p|Nanoce1779_2|532056|organism=Nannochloropsis oceanica|type=CDS|length=3444bp|location=Sequence derived from alignment at scaffold_22:339844..341366+ (Nannochloropsis oceanica)
ATGCTGGACCGTTGGAAGAAGCTGCACAAGGATTTGTTCAACGCCAAAAC
GGGCACCTTCGACCTTAGCAAGGTCCCGGATGTGCACGACAACATCAGGT
ACGACATGCTCCACAACTGGCACCTGGGCCTGCAGGGCGTGGACGAGCTC
TACGACCTGGCCAAGGCCTTCGCGGACACCATTGTGCCCCAGGAGTACGG
TGTGGACCCGGAGGAGAAGAGGATACTGGGCAGCCACATGTGCCAGGCCC
TGCTGGAGAAGATCAAGTACGACCTGATCATCGCCCGGGGCGACGAAAAC
TTCGACGTCCGGTACAACCTGGACCTCGCCCACGCCGACGACCTGGCCAT
CAACTCCCTCGGCAGGAGAGTCAGGACCCGGCTCTATTTCACCAGCGAGT
CCCATCTGCACGCCCTCCTTAACGTCATGCGTTTTCCCCCCGAAAAGGAC
GAGGAGGGAGGGGGAGAGGGCGCGGGGGAGGGGGGGCTGGCCAGTTGCTT
CACAGAGGAGGCGAGGCGAGTGATCGAAAGCACACCCGAGCTGTGCTACC
TAACGCACGTGGTCCTGCGCATGTTCGAGGACCTGGACAAGCACGAGGAC
GACCCCACGCGATTCCGCATCGAGATCCTTTTTTCTCCGGGTACGTTTTC
GGTCTTGTTTCCCTATCATAATCGTATCTTCATTCATTTGTTCGCTCATT
CATTCATCGATTCCCGCATCTTCAAATTCCTTCCCGACCACCCCCCACCC
ATTCCCCCACCACCCCACCAGGCGTCACTGCCCACCCGTCCCCCGTCGCC
AGCTCCCTCGCGGAGCACGTGCACCTCAAGCACATCGAGTGCCAGCGATG
GCACGTTATGAATGCTGGACCGTTGGAAGAAGCTGCACAAGGATTTGTTC
AACGCCAAAACGGGCACCTTCGACCTTAGCAAGGTCCCGGATGTGCACGA
CAACATCAGGTACGACATGCTCCACAACTGGCACCTGGGCCTGCAGGGCG
TGGACGAGCTCTACGACCTGGCCAAGGCCTTCGCGGACACCATTGTGCCC
CAGGAGTACGGTGTGGACCCGGAGGAGAAGAGGATACTGGGCAGCCACAT
GTGCCAGGCCCTGCTGGAGAAGATCAAGTACGACCTGATCATCGCCCGGG
GCGACGAAAACTTCGACGTCCGGTACAACCTGGACCTCGCCCACGCCGAC
GACCTGGCCATCAACTCCCTCGGCAGGAGAGTCAGGACCCGGCTCTATTT
CACCAGCGAGTCCCATCTGCACGCCCTCCTTAACGTCATGCGTTTTCCCC
CCGAAAAGGACGAGGAGGGAGGGGGAGAGGGCGCGGGGGAGGGGGGGCTG
GCCAGTTGCTTCACAGAGGAGGCGAGGCGAGTGATCGAAAGCACACCCGA
GCTGTGCTACCTAACGCACGTGGTCCTGCGCATGTTCGAGGACCTGGACA
AGCACGAGGACGACCCCACGCGATTCCGCATCGAGATCCTTTTTTCTCCG
GGTACGTTTTCGGTCTTGTTTCCCTATCATAATCGTATCTTCATTCATTT
GTTCGCTCATTCATTCATCGATTCCCGCATCTTCAAATTCCTTCCCGACC
ACCCCCCACCCATTCCCCCACCACCCCACCAGGCGTCACTGCCCACCCGT
CCCCCGTCGCCAGCTCCCTCGCGGAGCACGTGCACCTCAAGCACATCGAG
TGCCAGCGATGGCACGTTATGAATGCTGGACCGTTGGAAGAAGCTGCACA
AGGATTTGTTCAACGCCAAAACGGGCACCTTCGACCTTAGCAAGGTCCCG
GATGTGCACGACAACATCAGGTACGACATGCTCCACAACTGGCACCTGGG
CCTGCAGGGCGTGGACGAGCTCTACGACCTGGCCAAGGCCTTCGCGGACA
CCATTGTGCCCCAGGAGTACGGTGTGGACCCGGAGGAGAAGAGGATACTG
GGCAGCCACATGTGCCAGGCCCTGCTGGAGAAGATCAAGTACGACCTGAT
CATCGCCCGGGGCGACGAAAACTTCGACGTCCGGTACAACCTGGACCTCG
CCCACGCCGACGACCTGGCCATCAACTCCCTCGGCAGGAGAGTCAGGACC
CGGCTCTATTTCACCAGCGAGTCCCATCTGCACGCCCTCCTTAACGTCAT
GCGTTTTCCCCCCGAAAAGGACGAGGAGGGAGGGGGAGAGGGCGCGGGGG
AGGGGGGGCTGGCCAGTTGCTTCACAGAGGAGGCGAGGCGAGTGATCGAA
AGCACACCCGAGCTGTGCTACCTAACGCACGTGGTCCTGCGCATGTTCGA
GGACCTGGACAAGCACGAGGACGACCCCACGCGATTCCGCATCGAGATCC
TTTTTTCTCCGGGTACGTTTTCGGTCTTGTTTCCCTATCATAATCGTATC
TTCATTCATTTGTTCGCTCATTCATTCATCGATTCCCGCATCTTCAAATT
CCTTCCCGACCACCCCCCACCCATTCCCCCACCACCCCACCAGGCGTCAC
TGCCCACCCGTCCCCCGTCGCCAGCTCCCTCGCGGAGCACGTGCACCTCA
AGCACATCGAGTGCCAGCGATGGCACGTTATGAATGCTGGACCGTTGGAA
GAAGCTGCACAAGGATTTGTTCAACGCCAAAACGGGCACCTTCGACCTTA
GCAAGGTCCCGGATGTGCACGACAACATCAGGTACGACATGCTCCACAAC
TGGCACCTGGGCCTGCAGGGCGTGGACGAGCTCTACGACCTGGCCAAGGC
CTTCGCGGACACCATTGTGCCCCAGGAGTACGGTGTGGACCCGGAGGAGA
AGAGGATACTGGGCAGCCACATGTGCCAGGCCCTGCTGGAGAAGATCAAG
TACGACCTGATCATCGCCCGGGGCGACGAAAACTTCGACGTCCGGTACAA
CCTGGACCTCGCCCACGCCGACGACCTGGCCATCAACTCCCTCGGCAGGA
GAGTCAGGACCCGGCTCTATTTCACCAGCGAGTCCCATCTGCACGCCCTC
CTTAACGTCATGCGTTTTCCCCCCGAAAAGGACGAGGAGGGAGGGGGAGA
GGGCGCGGGGGAGGGGGGGCTGGCCAGTTGCTTCACAGAGGAGGCGAGGC
GAGTGATCGAAAGCACACCCGAGCTGTGCTACCTAACGCACGTGGTCCTG
CGCATGTTCGAGGACCTGGACAAGCACGAGGACGACCCCACGCGATTCCG
CATCGAGATCCTTTTTTCTCCGGGTACGTTTTCGGTCTTGTTTCCCTATC
ATAATCGTATCTTCATTCATTTGTTCGCTCATTCATTCATCGATTCCCGC
ATCTTCAAATTCCTTCCCGACCACCCCCCACCCATTCCCCCACCACCCCA
CCAGGCGTCACTGCCCACCCGTCCCCCGTCGCCAGCTCCCTCGCGGAGCA
CGTGCACCTCAAGCACATCGAGTGCCAGCGATGGCACGTTATGA

Synonyms

Publications